Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:28:52 (19584): wrapper (7.7.26015): starting
18:28:52 (19584): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 18:28:52] Arguments: --nthreads 8
[2025-11-21 18:28:52] Threads: 8
[2025-11-21 18:28:52] Checking for CVMFS
[2025-11-21 18:28:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 18:28:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 18:28:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 18:28:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 18:28:53] 2.11.2.0 2954 66405 85104 153150 0 1 11332423 20275200 1 130560 0 19556426 99.940 2822734 29154 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 18:28:53] CVMFS is ok
[2025-11-21 18:28:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 18:28:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 18:28:53] Further information can be found at the LHC@home message board.
[2025-11-21 18:28:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:28:53] Checking for apptainer binary...
[2025-11-21 18:28:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 18:28:53] Running /usr/bin/apptainer --version
[2025-11-21 18:28:53] apptainer version 1.3.2-1.el7
[2025-11-21 18:28:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:28:55] c-115-12.aglt2.org
[2025-11-21 18:28:55] apptainer works
[2025-11-21 18:28:55] Set ATHENA_PROC_NUMBER=8
[2025-11-21 18:28:55] Set ATHENA_CORE_NUMBER=8
[2025-11-21 18:28:55] Starting ATLAS job with PandaID=6894269263
[2025-11-21 18:28:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:45:26]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:45:26] 2025-11-22 10:44:50,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,293 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 05:45:26] 2025-11-22 10:44:50,299 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-11-22 05:45:26] 2025-11-22 10:44:50,301 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894269263/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,302 | INFO     | extracted standard info from prmon json
[2025-11-22 05:45:26] 2025-11-22 10:44:50,302 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 05:45:26] 2025-11-22 10:44:50,302 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 05:45:26] 2025-11-22 10:44:50,314 | INFO     | fitting pss+swap vs Time
[2025-11-22 05:45:26] 2025-11-22 10:44:50,315 | INFO     | sum of square deviations: 90778309882.93939
[2025-11-22 05:45:26] 2025-11-22 10:44:50,323 | INFO     | sum of deviations: 646645450410.0778
[2025-11-22 05:45:26] 2025-11-22 10:44:50,323 | INFO     | mean x: 1763788006.1506023
[2025-11-22 05:45:26] 2025-11-22 10:44:50,323 | INFO     | mean y: 2977630.1792168673
[2025-11-22 05:45:26] 2025-11-22 10:44:50,323 | INFO     | intersect: -12561097324.905401
[2025-11-22 05:45:26] 2025-11-22 10:44:50,324 | INFO     | chi2: 5.755839220767023
[2025-11-22 05:45:26] 2025-11-22 10:44:50,325 | INFO     | sum of square deviations: 88743129060.80731
[2025-11-22 05:45:26] 2025-11-22 10:44:50,333 | INFO     | sum of deviations: 865322124248.5618
[2025-11-22 05:45:26] 2025-11-22 10:44:50,333 | INFO     | mean x: 1763787853.6555388
[2025-11-22 05:45:26] 2025-11-22 10:44:50,333 | INFO     | mean y: 2994008.531107739
[2025-11-22 05:45:26] 2025-11-22 10:44:50,333 | INFO     | intersect: -17195460321.417416
[2025-11-22 05:45:26] 2025-11-22 10:44:50,334 | INFO     | chi2: 2.760512550165589
[2025-11-22 05:45:26] 2025-11-22 10:44:50,334 | INFO     | current chi2=2.760512550165589 (change=52.03979047563245 %)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,335 | INFO     | sum of square deviations: 86738599976.14227
[2025-11-22 05:45:26] 2025-11-22 10:44:50,343 | INFO     | sum of deviations: 923803305959.4458
[2025-11-22 05:45:26] 2025-11-22 10:44:50,343 | INFO     | mean x: 1763787701.1605504
[2025-11-22 05:45:26] 2025-11-22 10:44:50,343 | INFO     | mean y: 2998450.3195718653
[2025-11-22 05:45:26] 2025-11-22 10:44:50,343 | INFO     | intersect: -18782097340.837963
[2025-11-22 05:45:26] 2025-11-22 10:44:50,344 | INFO     | chi2: 2.443670496517894
[2025-11-22 05:45:26] 2025-11-22 10:44:50,344 | INFO     | current chi2=2.443670496517894 (change=11.477653076733496 %)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,344 | INFO     | right removable region: 653
[2025-11-22 05:45:26] 2025-11-22 10:44:50,345 | INFO     | sum of square deviations: 88742865540.80725
[2025-11-22 05:45:26] 2025-11-22 10:44:50,353 | INFO     | sum of deviations: 457476128988.3445
[2025-11-22 05:45:26] 2025-11-22 10:44:50,353 | INFO     | mean x: 1763788158.6555388
[2025-11-22 05:45:26] 2025-11-22 10:44:50,353 | INFO     | mean y: 2991776.001517451
[2025-11-22 05:45:26] 2025-11-22 10:44:50,353 | INFO     | intersect: -9089468494.01509
[2025-11-22 05:45:26] 2025-11-22 10:44:50,354 | INFO     | chi2: 3.4365793858694165
[2025-11-22 05:45:26] 2025-11-22 10:44:50,354 | INFO     | current chi2=3.4365793858694165 (change=40.294034387370225 %)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,354 | INFO     | sum of square deviations: 86738153456.7783
[2025-11-22 05:45:26] 2025-11-22 10:44:50,362 | INFO     | sum of deviations: 418248427611.7392
[2025-11-22 05:45:26] 2025-11-22 10:44:50,363 | INFO     | mean x: 1763788311.1574924
[2025-11-22 05:45:26] 2025-11-22 10:44:50,363 | INFO     | mean y: 2994758.2064220184
[2025-11-22 05:45:26] 2025-11-22 10:44:50,363 | INFO     | intersect: -8501932524.447614
[2025-11-22 05:45:26] 2025-11-22 10:44:50,363 | INFO     | chi2: 3.3935338258841634
[2025-11-22 05:45:26] 2025-11-22 10:44:50,364 | INFO     | current chi2=3.3935338258841634 (change=1.2525699293387051 %)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,364 | INFO     | left removable region: 20
[2025-11-22 05:45:26] 2025-11-22 10:44:50,364 | INFO     | sum of square deviations: 78648151821.30792
[2025-11-22 05:45:26] 2025-11-22 10:44:50,372 | INFO     | sum of deviations: 650934577392.323
[2025-11-22 05:45:26] 2025-11-22 10:44:50,372 | INFO     | mean x: 1763788280.6729858
[2025-11-22 05:45:26] 2025-11-22 10:44:50,372 | INFO     | mean y: 3019252.252764613
[2025-11-22 05:45:26] 2025-11-22 10:44:50,372 | INFO     | intersect: -14595045069.690369
[2025-11-22 05:45:26] 2025-11-22 10:44:50,373 | INFO     | chi2: 0.04719389000631619
[2025-11-22 05:45:26] 2025-11-22 10:44:50,373 | INFO     | current memory leak: 8.28 B/s (using 633 data points, chi2=0.05)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | could have reported an average CPU frequency of 2368 MHz (26 samples)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | ..............................
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | . Timing measurements:
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | . get job = 0 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | . initial setup = 2 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | . payload setup = 8 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | . stage-in = 0 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | . payload execution = 40496 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,374 | INFO     | . stage-out = 3 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,375 | INFO     | . log creation = 0 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,375 | INFO     | ..............................
[2025-11-22 05:45:26] 2025-11-22 10:44:50,648 | INFO     | 
[2025-11-22 05:45:26] 2025-11-22 10:44:50,648 | INFO     | job summary report
[2025-11-22 05:45:26] 2025-11-22 10:44:50,648 | INFO     | --------------------------------------------------
[2025-11-22 05:45:26] 2025-11-22 10:44:50,648 | INFO     | PanDA job id: 6894269263
[2025-11-22 05:45:26] 2025-11-22 10:44:50,649 | INFO     | task id: 47533967
[2025-11-22 05:45:26] 2025-11-22 10:44:50,649 | INFO     | errors: (none)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,649 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 05:45:26] 2025-11-22 10:44:50,649 | INFO     | pilot state: finished 
[2025-11-22 05:45:26] 2025-11-22 10:44:50,649 | INFO     | transexitcode: 0
[2025-11-22 05:45:26] 2025-11-22 10:44:50,649 | INFO     | exeerrorcode: 0
[2025-11-22 05:45:26] 2025-11-22 10:44:50,650 | INFO     | exeerrordiag: 
[2025-11-22 05:45:26] 2025-11-22 10:44:50,650 | INFO     | exitcode: 0
[2025-11-22 05:45:26] 2025-11-22 10:44:50,650 | INFO     | exitmsg: OK
[2025-11-22 05:45:26] 2025-11-22 10:44:50,650 | INFO     | cpuconsumptiontime: 315371 s
[2025-11-22 05:45:26] 2025-11-22 10:44:50,650 | INFO     | nevents: 1000
[2025-11-22 05:45:26] 2025-11-22 10:44:50,650 | INFO     | neventsw: 0
[2025-11-22 05:45:26] 2025-11-22 10:44:50,650 | INFO     | pid: 30107
[2025-11-22 05:45:26] 2025-11-22 10:44:50,651 | INFO     | pgrp: 30107
[2025-11-22 05:45:26] 2025-11-22 10:44:50,651 | INFO     | corecount: 8
[2025-11-22 05:45:26] 2025-11-22 10:44:50,651 | INFO     | event service: False
[2025-11-22 05:45:26] 2025-11-22 10:44:50,651 | INFO     | sizes: {0: 2298806, 1: 2298806, 6: 2299096, 11: 2299124, 40505: 2342886, 40510: 2351880, 40513: 2352092, 40521: 2352338}
[2025-11-22 05:45:26] 2025-11-22 10:44:50,651 | INFO     | --------------------------------------------------
[2025-11-22 05:45:26] 2025-11-22 10:44:50,651 | INFO     | 
[2025-11-22 05:45:26] 2025-11-22 10:44:50,652 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 05:45:26] 2025-11-22 10:44:50,680 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,680 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,680 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,680 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,681 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,681 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,681 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,683 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,683 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 05:45:26] 2025-11-22 10:44:50,684 | INFO     | job 6894269263 has completed (purged errors)
[2025-11-22 05:45:26] 2025-11-22 10:44:50,684 | INFO     | overall cleanup function is called
[2025-11-22 05:45:26] 2025-11-22 10:44:51,699 | INFO     | --- collectZombieJob: --- 10, [30107]
[2025-11-22 05:45:26] 2025-11-22 10:44:51,700 | INFO     | zombie collector waiting for pid 30107
[2025-11-22 05:45:26] 2025-11-22 10:44:51,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:45:26] 2025-11-22 10:44:51,700 | INFO     | collected zombie processes
[2025-11-22 05:45:26] 2025-11-22 10:44:51,700 | INFO     | will attempt to kill all subprocesses of pid=30107
[2025-11-22 05:45:26] 2025-11-22 10:44:51,782 | INFO     | process IDs to be killed: [30107] (in reverse order)
[2025-11-22 05:45:26] 2025-11-22 10:44:51,835 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:45:26] 2025-11-22 10:44:51,836 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:45:26] 2025-11-22 10:44:51,840 | INFO     | did not find any defunct processes belonging to 30107
[2025-11-22 05:45:26] 2025-11-22 10:44:51,843 | INFO     | did not find any defunct processes belonging to 30107
[2025-11-22 05:45:26] 2025-11-22 10:44:51,846 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:45:26] 2025-11-22 10:44:51,846 | INFO     | ready for new job
[2025-11-22 05:45:26] 2025-11-22 10:44:51,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:45:26] 2025-11-22 10:44:51,849 | INFO     | ***************************************
[2025-11-22 05:45:26] 2025-11-22 10:44:51,849 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:45:26] 2025-11-22 10:44:51,850 | INFO     | ***************************************
[2025-11-22 05:45:26] 2025-11-22 10:44:51,850 | INFO     | 
[2025-11-22 05:45:26] 2025-11-22 10:44:51,850 | INFO     | architecture information:
[2025-11-22 05:45:26] 2025-11-22 10:44:51,851 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:45:26] 2025-11-22 10:44:51,869 | INFO     | cat /etc/os-release:
[2025-11-22 05:45:26] NAME="CentOS Linux"
[2025-11-22 05:45:26] VERSION="7 (Core)"
[2025-11-22 05:45:26] ID="centos"
[2025-11-22 05:45:26] ID_LIKE="rhel fedora"
[2025-11-22 05:45:26] VERSION_ID="7"
[2025-11-22 05:45:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:45:26] ANSI_COLOR="0;31"
[2025-11-22 05:45:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:45:26] HOME_URL="https://www.centos.org/"
[2025-11-22 05:45:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:45:26] 
[2025-11-22 05:45:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:45:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:45:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:45:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:45:26] 
[2025-11-22 05:45:26] 2025-11-22 10:44:51,869 | INFO     | ***************************************
[2025-11-22 05:45:26] 2025-11-22 10:44:52,372 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 05:45:26] 2025-11-22 10:44:52,392 | INFO     | sufficient remaining disk space (17611882496 B)
[2025-11-22 05:45:26] 2025-11-22 10:44:52,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:45:26] 2025-11-22 10:44:52,393 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:45:26] 2025-11-22 10:44:52,393 | INFO     | update_server=False
[2025-11-22 05:45:26] 2025-11-22 10:44:52,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:45:26] 2025-11-22 10:44:52,394 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:45:26] 2025-11-22 10:44:52,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:45:26] 2025-11-22 10:44:52,574 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 05:45:26] 2025-11-22 10:44:52,574 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 05:45:26] 2025-11-22 10:44:52,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:45:26] 2025-11-22 10:44:52,575 | INFO     | will abort loop
[2025-11-22 05:45:26] 2025-11-22 10:44:52,683 | INFO     | all data control threads have been joined
[2025-11-22 05:45:26] 2025-11-22 10:44:52,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:45:26] 2025-11-22 10:44:53,398 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:53,399 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:53,446 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:53,579 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:53,621 | INFO     | all payload control threads have been joined
[2025-11-22 05:45:26] 2025-11-22 10:44:53,686 | INFO     | [data] control thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:53,692 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:53,804 | INFO     | all job control threads have been joined
[2025-11-22 05:45:26] 2025-11-22 10:44:53,953 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:54,039 | INFO     | [job] validate thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:54,045 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:54,085 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:54,440 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:54,558 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:54,626 | INFO     | [payload] control thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:54,809 | INFO     | [job] control thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:44:56,905 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:45:03,020 | INFO     | job.realtimelogging is not enabled
[2025-11-22 05:45:26] 2025-11-22 10:45:04,026 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:45:26] 2025-11-22 10:45:19,436 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:45:26] 2025-11-22 10:45:21,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627435251520)>', '<ExcThread(monitor, started 140626607724288)>']
[2025-11-22 05:45:26] 2025-11-22 10:45:22,007 | INFO     | PID=23667 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 05:45:26] 2025-11-22 10:45:22,008 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:45:26] 2025-11-22 10:45:22,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:45:26] 2025-11-22 10:45:22,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:45:26] 2025-11-22 10:45:22,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:45:26] 2025-11-22 10:45:22,008 | INFO     | [monitor] control thread has ended
[2025-11-22 05:45:26] 2025-11-22 10:45:26,231 | INFO     | all workflow threads have been joined
[2025-11-22 05:45:26] 2025-11-22 10:45:26,232 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:45:26] 2025-11-22 10:45:26,232 | INFO     | traces error code: 0
[2025-11-22 05:45:26] 2025-11-22 10:45:26,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:45:26] 2025-11-22 10:45:26,337 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:45:26] 2025-11-22 10:45:26,341 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:45:26] 2025-11-22 10:45:26,344 [wrapper] pilotpid: 23667
[2025-11-22 05:45:26] 2025-11-22 10:45:26,349 [wrapper] Pilot exit status: 0
[2025-11-22 05:45:26] 2025-11-22 10:45:26,365 [wrapper] pandaids: 6894269263
[2025-11-22 05:45:26] 2025-11-22 10:45:26,405 [wrapper] cleanup supervisor_pilot  4903 23668
[2025-11-22 05:45:26] 2025-11-22 10:45:26,410 [wrapper] Test setup, not cleaning
[2025-11-22 05:45:26] 2025-11-22 10:45:26,414 [wrapper] apfmon messages muted
[2025-11-22 05:45:26] 2025-11-22 10:45:26,419 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:45:26] 2025-11-22 10:45:26,424 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:45:26]  *** Error codes and diagnostics ***
[2025-11-22 05:45:26]     "exeErrorCode": 0,
[2025-11-22 05:45:26]     "exeErrorDiag": "",
[2025-11-22 05:45:26]     "pilotErrorCode": 0,
[2025-11-22 05:45:26]     "pilotErrorDiag": "",
[2025-11-22 05:45:26]  *** Listing of results directory ***
[2025-11-22 05:45:26] total 1312084
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 01:04 pilot3.tar.gz
[2025-11-22 05:45:26] -rwx------ 1 boincer umatlas     36292 Nov 21 01:33 runpilot2-wrapper.sh
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 01:33 queuedata.json
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas       100 Nov 21 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:45:26] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 18:28 run_atlas
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas       105 Nov 21 18:28 job.xml
[2025-11-22 05:45:26] -rw-r--r-- 2 boincer umatlas 410527447 Nov 21 18:28 EVNT.47493127._002283.pool.root.1
[2025-11-22 05:45:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:28 start_atlas.sh
[2025-11-22 05:45:26] drwxrwx--x 2 boincer umatlas      4096 Nov 21 18:28 shared
[2025-11-22 05:45:26] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 18:28 input.tar.gz
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas         0 Nov 21 18:28 boinc_lockfile
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas      2785 Nov 21 18:28 pandaJob.out
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas        57 Nov 21 18:28 setup.sh.local
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas    989798 Nov 21 18:29 agis_schedconf.cvmfs.json
[2025-11-22 05:45:26] drwx------ 5 boincer umatlas      4096 Nov 21 18:29 pilot3
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas       533 Nov 22 05:33 boinc_task_state.xml
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas      5912 Nov 22 05:40 init_data.xml
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas 914111694 Nov 22 05:44 HITS.47533967._002547.pool.root.1
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas      1061 Nov 22 05:44 memory_monitor_summary.json
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas        95 Nov 22 05:44 pilot_heartbeat.json
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas   1526164 Nov 22 05:44 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas   1928846 Nov 22 05:44 log.47533967._002547.job.log.tgz.1
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas      8661 Nov 22 05:44 heartbeat.json
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 05:45 boinc_mmap_file
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas        29 Nov 22 05:45 wrapper_checkpoint.txt
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas      5004 Nov 22 05:45 pilotlog.txt
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas   5578710 Nov 22 05:45 log.47533967._002547.job.log.1
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas       353 Nov 22 05:45 output.list
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas       620 Nov 22 05:45 runtime_log
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas   7526400 Nov 22 05:45 result.tar.gz
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas      9343 Nov 22 05:45 runtime_log.err
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas       668 Nov 22 05:45 iNTLDmGtZg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmPHKDmIegHMn.diag
[2025-11-22 05:45:26] -rw-r--r-- 1 boincer umatlas     21273 Nov 22 05:45 stderr.txt
[2025-11-22 05:45:26] HITS file was successfully produced:
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas 914111694 Nov 22 05:44 shared/HITS.pool.root.1
[2025-11-22 05:45:26]  *** Contents of shared directory: ***
[2025-11-22 05:45:26] total 1301548
[2025-11-22 05:45:26] -rw-r--r-- 2 boincer umatlas 410527447 Nov 21 18:28 ATLAS.root_0
[2025-11-22 05:45:26] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:28 start_atlas.sh
[2025-11-22 05:45:26] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 18:28 input.tar.gz
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas 914111694 Nov 22 05:44 HITS.pool.root.1
[2025-11-22 05:45:26] -rw------- 1 boincer umatlas   7526400 Nov 22 05:45 result.tar.gz
05:45:28 (19584): run_atlas exited; CPU time 312838.739663
05:45:28 (19584): called boinc_finish(0)

</stderr_txt>
]]>

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