Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:14:38 (40765): wrapper (7.7.26015): starting
04:14:38 (40765): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 04:14:38] Arguments: --nthreads 12
[2025-11-22 04:14:38] Threads: 12
[2025-11-22 04:14:38] Checking for CVMFS
[2025-11-22 04:14:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 04:14:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 04:14:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 04:14:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 04:14:44] 2.13.3.0 5957 647 96408 153157 0 88 4606825 102400001 751 130560 29 2958124 99.994 28120 7 http://sampacs01.if.usp.br:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 04:14:44] CVMFS is ok
[2025-11-22 04:14:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 04:14:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 04:14:44] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 04:14:44] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 04:14:44] Further information can be found at the LHC@home message board.
[2025-11-22 04:14:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 04:14:44] Checking for apptainer binary...
[2025-11-22 04:14:44] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-22 04:14:44] apptainer is not installed, using version from CVMFS
[2025-11-22 04:14:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 04:14:44] crocidura-russula
[2025-11-22 04:14:44] apptainer works
[2025-11-22 04:14:44] Set ATHENA_PROC_NUMBER=12
[2025-11-22 04:14:44] Set ATHENA_CORE_NUMBER=12
[2025-11-22 04:14:44] Starting ATLAS job with PandaID=6893887716
[2025-11-22 04:14:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 04:48:30]  *** The last 200 lines of the pilot log: ***
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | chi2: 0.0014089992438249617
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | current memory leak: 52.68 B/s (using 23 data points, chi2=0.00)
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | could have reported an average CPU frequency of 3453 MHz (5 samples)
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | ..............................
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . Timing measurements:
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . get job = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . initial setup = 23 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . payload setup = 2 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . stage-in = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . payload execution = 1810 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . stage-out = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . log creation = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | ..............................
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/0/PanDA_Pilot-6893887716/pilotlog.txt
[2025-11-22 04:48:30] 2025-11-22 04:47:57,947 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 04:48:30] - Log from pilotlog.txt -
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | sum of square deviations: 3765652.0
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | sum of deviations: 198362545.0
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | mean x: 1763785905.0
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | mean y: 676243.3478260869
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | intersect: -92909943471.62537
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | chi2: 0.0014089992438249617
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | current memory leak: 52.68 B/s (using 23 data points, chi2=0.00)
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | could have reported an average CPU frequency of 3453 MHz (5 samples)
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | ..............................
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . Timing measurements:
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . get job = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . initial setup = 23 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . payload setup = 2 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . stage-in = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . payload execution = 1810 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . stage-out = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . log creation = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | ..............................
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/0/PanDA_Pilot-6893887716/pilotlog.txt
[2025-11-22 04:48:30] 2025-11-22 04:47:57,947 | WARNING  | 
[2025-11-22 04:48:30] [begin log extracts]
[2025-11-22 04:48:30] - Log from pilotlog.txt -
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | sum of square deviations: 3765652.0
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | sum of deviations: 198362545.0
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | mean x: 1763785905.0
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | mean y: 676243.3478260869
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | intersect: -92909943471.62537
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | chi2: 0.0014089992438249617
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | current memory leak: 52.68 B/s (using 23 data points, chi2=0.00)
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | could have reported an average CPU frequency of 3453 MHz (5 samples)
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | ..............................
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . Timing measurements:
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . get job = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . initial setup = 23 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . payload setup = 2 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . stage-in = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . payload execution = 1810 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . stage-out = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | . log creation = 0 s
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | ..............................
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 04:48:30] 2025-11-22 04:47:57,938 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/0/PanDA_Pilot-6893887716/pilotlog.txt
[2025-11-22 04:48:30] [end log extracts]
[2025-11-22 04:48:30] 2025-11-22 04:47:57,947 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 04:48:30] 2025-11-22 04:47:57,948 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 04:48:30] 2025-11-22 04:47:58,308 | INFO     | 
[2025-11-22 04:48:30] 2025-11-22 04:47:58,308 | INFO     | job summary report
[2025-11-22 04:48:30] 2025-11-22 04:47:58,308 | INFO     | --------------------------------------------------
[2025-11-22 04:48:30] 2025-11-22 04:47:58,308 | INFO     | PanDA job id: 6893887716
[2025-11-22 04:48:30] 2025-11-22 04:47:58,308 | INFO     | task id: 47523449
[2025-11-22 04:48:30] 2025-11-22 04:47:58,308 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 04:45:33,730 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 04:48:30] 2025-11-22 04:47:58,308 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | pilot state: failed 
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | transexitcode: 65
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | exeerrorcode: 65
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | exitcode: 65
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algo
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | cpuconsumptiontime: 34 s
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | nevents: 0
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | neventsw: 0
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | pid: 16579
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | pgrp: 16579
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | corecount: 12
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | event service: False
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | sizes: {0: 2298805, 2: 2299067, 10: 2299095, 1816: 2323520, 1817: 2323524, 1818: 2328056, 1954: 2328226}
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | --------------------------------------------------
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | 
[2025-11-22 04:48:30] 2025-11-22 04:47:58,309 | INFO     | executing command: ls -lF /virtma/boinc/slots/0
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | job 6893887716 has completed (purged errors)
[2025-11-22 04:48:30] 2025-11-22 04:47:58,321 | INFO     | overall cleanup function is called
[2025-11-22 04:48:30] 2025-11-22 04:47:59,328 | INFO     | --- collectZombieJob: --- 10, [16579]
[2025-11-22 04:48:30] 2025-11-22 04:47:59,328 | INFO     | zombie collector waiting for pid 16579
[2025-11-22 04:48:30] 2025-11-22 04:47:59,328 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 04:48:30] 2025-11-22 04:47:59,328 | INFO     | collected zombie processes
[2025-11-22 04:48:30] 2025-11-22 04:47:59,328 | INFO     | will attempt to kill all subprocesses of pid=16579
[2025-11-22 04:48:30] 2025-11-22 04:47:59,416 | INFO     | process IDs to be killed: [16579] (in reverse order)
[2025-11-22 04:48:30] 2025-11-22 04:47:59,446 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 04:48:30] 2025-11-22 04:47:59,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 04:48:30] 2025-11-22 04:47:59,449 | INFO     | did not find any defunct processes belonging to 16579
[2025-11-22 04:48:30] 2025-11-22 04:47:59,451 | INFO     | did not find any defunct processes belonging to 16579
[2025-11-22 04:48:30] 2025-11-22 04:47:59,452 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 04:48:30] 2025-11-22 04:47:59,452 | INFO     | ready for new job
[2025-11-22 04:48:30] 2025-11-22 04:47:59,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 04:48:30] 2025-11-22 04:47:59,452 | INFO     | ***************************************
[2025-11-22 04:48:30] 2025-11-22 04:47:59,452 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 04:48:30] 2025-11-22 04:47:59,452 | INFO     | ***************************************
[2025-11-22 04:48:30] 2025-11-22 04:47:59,452 | INFO     | 
[2025-11-22 04:48:30] 2025-11-22 04:47:59,454 | INFO     | architecture information:
[2025-11-22 04:48:30] 2025-11-22 04:47:59,454 | INFO     | executing command: cat /etc/os-release
[2025-11-22 04:48:30] 2025-11-22 04:47:59,459 | INFO     | cat /etc/os-release:
[2025-11-22 04:48:30] NAME="CentOS Linux"
[2025-11-22 04:48:30] VERSION="7 (Core)"
[2025-11-22 04:48:30] ID="centos"
[2025-11-22 04:48:30] ID_LIKE="rhel fedora"
[2025-11-22 04:48:30] VERSION_ID="7"
[2025-11-22 04:48:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 04:48:30] ANSI_COLOR="0;31"
[2025-11-22 04:48:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 04:48:30] HOME_URL="https://www.centos.org/"
[2025-11-22 04:48:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 04:48:30] 
[2025-11-22 04:48:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 04:48:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 04:48:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 04:48:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 04:48:30] 
[2025-11-22 04:48:30] 2025-11-22 04:47:59,459 | INFO     | ***************************************
[2025-11-22 04:48:30] 2025-11-22 04:47:59,962 | INFO     | executing command: df -mP /virtma/boinc/slots/0
[2025-11-22 04:48:30] 2025-11-22 04:47:59,970 | INFO     | sufficient remaining disk space (955241201664 B)
[2025-11-22 04:48:30] 2025-11-22 04:47:59,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 04:48:30] 2025-11-22 04:47:59,971 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 04:48:30] 2025-11-22 04:47:59,971 | INFO     | update_server=False
[2025-11-22 04:48:30] 2025-11-22 04:47:59,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 04:48:30] 2025-11-22 04:47:59,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 04:48:30] 2025-11-22 04:47:59,971 | INFO     | aborting loop
[2025-11-22 04:48:30] 2025-11-22 04:47:59,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 04:48:30] 2025-11-22 04:48:00,167 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 04:48:30] 2025-11-22 04:48:00,774 | INFO     | all data control threads have been joined
[2025-11-22 04:48:30] 2025-11-22 04:48:00,974 | INFO     | [job] retrieve thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:00,976 | INFO     | [job] job monitor thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:00,976 | INFO     | [job] queue monitor thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:01,285 | INFO     | all payload control threads have been joined
[2025-11-22 04:48:30] 2025-11-22 04:48:01,420 | INFO     | [data] copytool_in thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:01,568 | INFO     | all job control threads have been joined
[2025-11-22 04:48:30] 2025-11-22 04:48:01,779 | INFO     | [data] control thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:01,954 | INFO     | [payload] validate_post thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,088 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,172 | INFO     | [data] copytool_out thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,264 | INFO     | [job] validate thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,290 | INFO     | [payload] control thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,344 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,350 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,366 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,503 | INFO     | [payload] failed_post thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:02,570 | INFO     | [job] control thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:03,137 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 04:48:30] 2025-11-22 04:48:07,143 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 04:48:30] 2025-11-22 04:48:13,286 | INFO     | [monitor] cgroup control has ended
[2025-11-22 04:48:30] 2025-11-22 04:48:13,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867017877312)>', '<ExcThread(monitor, started 139866348189440)>']
[2025-11-22 04:48:30] 2025-11-22 04:48:18,669 | INFO     | all workflow threads have been joined
[2025-11-22 04:48:30] 2025-11-22 04:48:18,669 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 04:48:30] 2025-11-22 04:48:18,670 | INFO     | traces error code: 0
[2025-11-22 04:48:30] 2025-11-22 04:48:18,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 04:48:30] 2025-11-22 04:48:30,853 | INFO     | PID=46825 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 04:48:30] 2025-11-22 04:48:30,853 | INFO     | .. there are 3 such processes running
[2025-11-22 04:48:30] 2025-11-22 04:48:30,854 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 04:48:30] 2025-11-22 04:48:30,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 04:48:30] 2025-11-22 04:48:30,854 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 04:48:30] 2025-11-22 04:48:30,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 04:48:30] 2025-11-22 04:48:30,854 | INFO     | [monitor] control thread has ended
[2025-11-22 04:48:30] 2025-11-22 04:48:30,898 [wrapper] ==== pilot stdout END ====
[2025-11-22 04:48:30] 2025-11-22 04:48:30,900 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 04:48:30] 2025-11-22 04:48:30,901 [wrapper] pilotpid: 46825
[2025-11-22 04:48:30] 2025-11-22 04:48:30,903 [wrapper] Pilot exit status: 0
[2025-11-22 04:48:30] 2025-11-22 04:48:30,907 [wrapper] pandaids: 6893887716
[2025-11-22 04:48:30] 2025-11-22 04:48:30,928 [wrapper] cleanup supervisor_pilot 26752 46826
[2025-11-22 04:48:30] 2025-11-22 04:48:30,930 [wrapper] Test setup, not cleaning
[2025-11-22 04:48:30] 2025-11-22 04:48:30,931 [wrapper] apfmon messages muted
[2025-11-22 04:48:30] 2025-11-22 04:48:30,932 [wrapper] ==== wrapper stdout END ====
[2025-11-22 04:48:30] 2025-11-22 04:48:30,933 [wrapper] ==== wrapper stderr END ====
[2025-11-22 04:48:30]  *** Error codes and diagnostics ***
[2025-11-22 04:48:30]     "exeErrorCode": 65,
[2025-11-22 04:48:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2025-11-22 04:48:30]     "pilotErrorCode": 1305,
[2025-11-22 04:48:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2025-11-22 04:48:30]  *** Listing of results directory ***
[2025-11-22 04:48:30] total 405032
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc    576529 Nov 20 23:11 pilot3.tar.gz
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc      5112 Nov 20 23:40 queuedata.json
[2025-11-22 04:48:30] -rwx------ 1 boinc boinc     36292 Nov 20 23:41 runpilot2-wrapper.sh
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc       100 Nov 22 04:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 04:48:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 04:14 run_atlas
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc       105 Nov 22 04:14 job.xml
[2025-11-22 04:48:30] -rw-r--r-- 2 boinc boinc     15847 Nov 22 04:14 start_atlas.sh
[2025-11-22 04:48:30] drwxrwx--x 2 boinc boinc        68 Nov 22 04:14 shared
[2025-11-22 04:48:30] -rw-r--r-- 2 boinc boinc    590105 Nov 22 04:14 input.tar.gz
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc      8919 Nov 22 04:14 init_data.xml
[2025-11-22 04:48:30] -rw-r--r-- 2 boinc boinc 410022772 Nov 22 04:14 EVNT.47493127._000985.pool.root.1
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc         0 Nov 22 04:14 boinc_setup_complete
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc         0 Nov 22 04:14 boinc_lockfile
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc      2785 Nov 22 04:14 pandaJob.out
[2025-11-22 04:48:30] -rw------- 1 boinc boinc    989752 Nov 22 04:14 agis_schedconf.cvmfs.json
[2025-11-22 04:48:30] -rw------- 1 boinc boinc   1526164 Nov 22 04:15 agis_ddmendpoints.agis.ALL.json
[2025-11-22 04:48:30] drwx------ 5 boinc boinc      4096 Nov 22 04:15 pilot3
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc       525 Nov 22 04:45 boinc_task_state.xml
[2025-11-22 04:48:30] -rw------- 1 boinc boinc      1010 Nov 22 04:45 memory_monitor_summary.json
[2025-11-22 04:48:30] -rw------- 1 boinc boinc     78832 Nov 22 04:45 log.47523449._009844.job.log.tgz.1
[2025-11-22 04:48:30] -rw------- 1 boinc boinc      9226 Nov 22 04:47 heartbeat.json
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc        24 Nov 22 04:48 wrapper_checkpoint.txt
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc      8192 Nov 22 04:48 boinc_mmap_file
[2025-11-22 04:48:30] -rw------- 1 boinc boinc        95 Nov 22 04:48 pilot_heartbeat.json
[2025-11-22 04:48:30] -rw------- 1 boinc boinc       820 Nov 22 04:48 pilotlog.txt
[2025-11-22 04:48:30] -rw------- 1 boinc boinc    334957 Nov 22 04:48 log.47523449._009844.job.log.1
[2025-11-22 04:48:30] -rw------- 1 boinc boinc       186 Nov 22 04:48 output.list
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc       620 Nov 22 04:48 runtime_log
[2025-11-22 04:48:30] -rw------- 1 boinc boinc    430080 Nov 22 04:48 result.tar.gz
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc      8661 Nov 22 04:48 runtime_log.err
[2025-11-22 04:48:30] -rw------- 1 boinc boinc       644 Nov 22 04:48 nhtMDmFSTg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSgIKDmVt19un.diag
[2025-11-22 04:48:30] -rw-r--r-- 1 boinc boinc     22341 Nov 22 04:48 stderr.txt
[2025-11-22 04:48:30] No HITS result produced
[2025-11-22 04:48:30]  *** Contents of shared directory: ***
[2025-11-22 04:48:30] total 401432
[2025-11-22 04:48:30] -rw-r--r-- 2 boinc boinc     15847 Nov 22 04:14 start_atlas.sh
[2025-11-22 04:48:30] -rw-r--r-- 2 boinc boinc    590105 Nov 22 04:14 input.tar.gz
[2025-11-22 04:48:30] -rw-r--r-- 2 boinc boinc 410022772 Nov 22 04:14 ATLAS.root_0
[2025-11-22 04:48:30] -rw------- 1 boinc boinc    430080 Nov 22 04:48 result.tar.gz
04:48:32 (40765): run_atlas exited; CPU time 50.490038
04:48:32 (40765): called boinc_finish(0)

</stderr_txt>
]]>

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