Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:12:51 (12895): wrapper (7.7.26015): starting
16:12:51 (12895): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 16:12:51] Arguments: --nthreads 8
[2025-11-24 16:12:51] Threads: 8
[2025-11-24 16:12:51] Checking for CVMFS
[2025-11-24 16:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:12:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:12:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:12:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:12:54] 2.11.2.0 13500 282605 143460 153248 1 87 14830487 25165825 1060 130560 14 130759021 99.868 83046397 2918 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 16:12:54] CVMFS is ok
[2025-11-24 16:12:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:12:54] Checking for apptainer binary...
[2025-11-24 16:12:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:12:54] Running /usr/bin/apptainer --version
[2025-11-24 16:12:54] apptainer version 1.3.2-1.el7
[2025-11-24 16:12:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:13:10] cg-vwn363.simple-grid.lan
[2025-11-24 16:13:10] apptainer works
[2025-11-24 16:13:10] Set ATHENA_PROC_NUMBER=8
[2025-11-24 16:13:10] Set ATHENA_CORE_NUMBER=8
[2025-11-24 16:13:10] Starting ATLAS job with PandaID=6894269257
[2025-11-24 16:13:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:40:44]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:40:44] 2025-11-25 14:39:47,922 | INFO     | time since job start (84158s) is within the limit (172800.0s)
[2025-11-25 15:40:44] 2025-11-25 14:39:49,400 | INFO     | monitor loop #5708: job 0:6894269257 is in state 'finished'
[2025-11-25 15:40:44] 2025-11-25 14:39:49,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:40:44] 2025-11-25 14:39:49,932 | INFO     | time since job start (84160s) is within the limit (172800.0s)
[2025-11-25 15:40:44] 2025-11-25 14:39:51,909 | INFO     | monitor loop #5709: job 0:6894269257 is in state 'finished'
[2025-11-25 15:40:44] 2025-11-25 14:39:51,909 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:40:44] 2025-11-25 14:39:51,939 | INFO     | time since job start (84162s) is within the limit (172800.0s)
[2025-11-25 15:40:44] 2025-11-25 14:39:53,946 | INFO     | time since job start (84164s) is within the limit (172800.0s)
[2025-11-25 15:40:44] 2025-11-25 14:39:54,416 | INFO     | monitor loop #5710: job 0:6894269257 is in state 'finished'
[2025-11-25 15:40:44] 2025-11-25 14:39:54,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:40:44] 2025-11-25 14:39:55,954 | INFO     | time since job start (84166s) is within the limit (172800.0s)
[2025-11-25 15:40:44] 2025-11-25 14:39:56,921 | INFO     | monitor loop #5711: job 0:6894269257 is in state 'finished'
[2025-11-25 15:40:44] 2025-11-25 14:39:56,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:40:44] 2025-11-25 14:39:57,434 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 15:40:44] 2025-11-25 14:39:57,437 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 15:40:44] 2025-11-25 14:39:57,439 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6894269257/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:40:44] 2025-11-25 14:39:57,441 | INFO     | extracted standard info from prmon json
[2025-11-25 15:40:44] 2025-11-25 14:39:57,441 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:40:44] 2025-11-25 14:39:57,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:40:44] 2025-11-25 14:39:57,473 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:40:44] 2025-11-25 14:39:57,476 | INFO     | sum of square deviations: 795592287790.1942
[2025-11-25 15:40:44] 2025-11-25 14:39:57,548 | INFO     | sum of deviations: 3943112778988.5737
[2025-11-25 15:40:44] 2025-11-25 14:39:57,548 | INFO     | mean x: 1764039727.147553
[2025-11-25 15:40:44] 2025-11-25 14:39:57,548 | INFO     | mean y: 2810407.378378378
[2025-11-25 15:40:44] 2025-11-25 14:39:57,549 | INFO     | intersect: -8740119479.585724
[2025-11-25 15:40:44] 2025-11-25 14:39:57,550 | INFO     | chi2: 30.310532605766376
[2025-11-25 15:40:44] 2025-11-25 14:39:57,553 | INFO     | sum of square deviations: 786907376183.5853
[2025-11-25 15:40:44] 2025-11-25 14:39:57,622 | INFO     | sum of deviations: 4377409962496.4053
[2025-11-25 15:40:44] 2025-11-25 14:39:57,622 | INFO     | mean x: 1764039574.6517596
[2025-11-25 15:40:44] 2025-11-25 14:39:57,622 | INFO     | mean y: 2818031.790322581
[2025-11-25 15:40:44] 2025-11-25 14:39:57,622 | INFO     | intersect: -9810184923.867586
[2025-11-25 15:40:44] 2025-11-25 14:39:57,624 | INFO     | chi2: 27.269599482947925
[2025-11-25 15:40:44] 2025-11-25 14:39:57,624 | INFO     | current chi2=27.269599482947925 (change=10.03259547554085 %)
[2025-11-25 15:40:44] 2025-11-25 14:39:57,624 | INFO     | right removable region: 1363
[2025-11-25 15:40:44] 2025-11-25 14:39:57,626 | INFO     | sum of square deviations: 786906417873.5862
[2025-11-25 15:40:44] 2025-11-25 14:39:57,677 | INFO     | sum of deviations: 3361551501134.934
[2025-11-25 15:40:44] 2025-11-25 14:39:57,678 | INFO     | mean x: 1764039879.6517596
[2025-11-25 15:40:44] 2025-11-25 14:39:57,678 | INFO     | mean y: 2820618.11143695
[2025-11-25 15:40:44] 2025-11-25 14:39:57,678 | INFO     | intersect: -7532905067.706875
[2025-11-25 15:40:44] 2025-11-25 14:39:57,680 | INFO     | chi2: 25.23502902660072
[2025-11-25 15:40:44] 2025-11-25 14:39:57,680 | INFO     | current chi2=25.23502902660072 (change=16.74501614729157 %)
[2025-11-25 15:40:44] 2025-11-25 14:39:57,680 | INFO     | left removable region: 10
[2025-11-25 15:40:44] 2025-11-25 14:39:57,682 | INFO     | sum of square deviations: 768021646116.8751
[2025-11-25 15:40:44] 2025-11-25 14:39:57,733 | INFO     | sum of deviations: 3360701651995.507
[2025-11-25 15:40:44] 2025-11-25 14:39:57,734 | INFO     | mean x: 1764039849.1611235
[2025-11-25 15:40:44] 2025-11-25 14:39:57,734 | INFO     | mean y: 2839509.0894308942
[2025-11-25 15:40:44] 2025-11-25 14:39:57,734 | INFO     | intersect: -7716228912.010156
[2025-11-25 15:40:44] 2025-11-25 14:39:57,736 | INFO     | chi2: 17.284289592835506
[2025-11-25 15:40:44] 2025-11-25 14:39:57,736 | INFO     | current memory leak: 4.38 B/s (using 1353 data points, chi2=17.28)
[2025-11-25 15:40:44] 2025-11-25 14:39:57,739 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-25 15:40:44] 2025-11-25 14:39:57,739 | INFO     | ..............................
[2025-11-25 15:40:44] 2025-11-25 14:39:57,739 | INFO     | . Timing measurements:
[2025-11-25 15:40:44] 2025-11-25 14:39:57,739 | INFO     | . get job = 0 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,740 | INFO     | . initial setup = 12 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,740 | INFO     | . payload setup = 196 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,740 | INFO     | . stage-in = 0 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,740 | INFO     | . payload execution = 83643 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,740 | INFO     | . stage-out = 6 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,740 | INFO     | . log creation = 2 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,740 | INFO     | ..............................
[2025-11-25 15:40:44] 2025-11-25 14:39:57,886 | INFO     | 
[2025-11-25 15:40:44] 2025-11-25 14:39:57,886 | INFO     | job summary report
[2025-11-25 15:40:44] 2025-11-25 14:39:57,886 | INFO     | --------------------------------------------------
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | PanDA job id: 6894269257
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | task id: 47533967
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | errors: (none)
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | pilot state: finished 
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | transexitcode: 0
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | exeerrorcode: 0
[2025-11-25 15:40:44] 2025-11-25 14:39:57,887 | INFO     | exeerrordiag: 
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | exitcode: 0
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | exitmsg: OK
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | cpuconsumptiontime: 340804 s
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | nevents: 1000
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | neventsw: 0
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | pid: 23115
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | pgrp: 23115
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | corecount: 8
[2025-11-25 15:40:44] 2025-11-25 14:39:57,888 | INFO     | event service: False
[2025-11-25 15:40:44] 2025-11-25 14:39:57,889 | INFO     | sizes: {0: 2284026, 1: 2284110, 2: 2284309, 13: 2284309, 24: 2284365, 34: 2284393, 45: 2284549, 56: 2284577, 67: 2284605, 77: 2284633, 88: 2284689, 99: 2284997, 10
[2025-11-25 15:40:44] 2025-11-25 14:39:57,889 | INFO     | --------------------------------------------------
[2025-11-25 15:40:44] 2025-11-25 14:39:57,889 | INFO     | 
[2025-11-25 15:40:44] 2025-11-25 14:39:57,889 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-25 15:40:44] 2025-11-25 14:39:57,968 | INFO     | time since job start (84168s) is within the limit (172800.0s)
[2025-11-25 15:40:44] 2025-11-25 14:39:58,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:40:44] 2025-11-25 14:39:58,385 | INFO     | job 6894269257 has completed (purged errors)
[2025-11-25 15:40:44] 2025-11-25 14:39:58,386 | INFO     | overall cleanup function is called
[2025-11-25 15:40:44] 2025-11-25 14:39:59,407 | INFO     | --- collectZombieJob: --- 10, [23115]
[2025-11-25 15:40:44] 2025-11-25 14:39:59,407 | INFO     | zombie collector waiting for pid 23115
[2025-11-25 15:40:44] 2025-11-25 14:39:59,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:40:44] 2025-11-25 14:39:59,407 | INFO     | collected zombie processes
[2025-11-25 15:40:44] 2025-11-25 14:39:59,408 | INFO     | will attempt to kill all subprocesses of pid=23115
[2025-11-25 15:40:44] 2025-11-25 14:39:59,525 | INFO     | process IDs to be killed: [23115] (in reverse order)
[2025-11-25 15:40:44] 2025-11-25 14:40:00,434 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:40:44] 2025-11-25 14:40:00,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:40:44] 2025-11-25 14:40:00,437 | INFO     | did not find any defunct processes belonging to 23115
[2025-11-25 15:40:44] 2025-11-25 14:40:00,441 | INFO     | did not find any defunct processes belonging to 23115
[2025-11-25 15:40:44] 2025-11-25 14:40:00,494 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:40:44] 2025-11-25 14:40:00,495 | INFO     | ready for new job
[2025-11-25 15:40:44] 2025-11-25 14:40:00,495 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:40:44] 2025-11-25 14:40:00,502 | INFO     | ***************************************
[2025-11-25 15:40:44] 2025-11-25 14:40:00,502 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:40:44] 2025-11-25 14:40:00,502 | INFO     | ***************************************
[2025-11-25 15:40:44] 2025-11-25 14:40:00,502 | INFO     | 
[2025-11-25 15:40:44] 2025-11-25 14:40:00,503 | INFO     | pilot is running in a VM
[2025-11-25 15:40:44] 2025-11-25 14:40:00,503 | INFO     | architecture information:
[2025-11-25 15:40:44] 2025-11-25 14:40:00,514 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:40:44] 2025-11-25 14:40:00,857 | INFO     | cat /etc/os-release:
[2025-11-25 15:40:44] NAME="CentOS Linux"
[2025-11-25 15:40:44] VERSION="7 (Core)"
[2025-11-25 15:40:44] ID="centos"
[2025-11-25 15:40:44] ID_LIKE="rhel fedora"
[2025-11-25 15:40:44] VERSION_ID="7"
[2025-11-25 15:40:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:40:44] ANSI_COLOR="0;31"
[2025-11-25 15:40:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:40:44] HOME_URL="https://www.centos.org/"
[2025-11-25 15:40:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:40:44] 
[2025-11-25 15:40:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:40:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:40:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:40:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:40:44] 
[2025-11-25 15:40:44] 2025-11-25 14:40:00,858 | INFO     | ***************************************
[2025-11-25 15:40:44] 2025-11-25 14:40:01,361 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-25 15:40:44] 2025-11-25 14:40:01,531 | INFO     | sufficient remaining disk space (495566454784 B)
[2025-11-25 15:40:44] 2025-11-25 14:40:01,531 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:40:44] 2025-11-25 14:40:01,532 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:40:44] 2025-11-25 14:40:01,532 | INFO     | update_server=False
[2025-11-25 15:40:44] 2025-11-25 14:40:01,532 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:40:44] 2025-11-25 14:40:01,533 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:40:44] 2025-11-25 14:40:01,847 | INFO     | all data control threads have been joined
[2025-11-25 15:40:44] 2025-11-25 14:40:01,937 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 15:40:44] 2025-11-25 14:40:01,937 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 15:40:44] 2025-11-25 14:40:01,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:40:44] 2025-11-25 14:40:01,938 | INFO     | will abort loop
[2025-11-25 15:40:44] 2025-11-25 14:40:02,538 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:02,578 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:02,601 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:02,663 | INFO     | all payload control threads have been joined
[2025-11-25 15:40:44] 2025-11-25 14:40:02,803 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:02,849 | INFO     | all job control threads have been joined
[2025-11-25 15:40:44] 2025-11-25 14:40:02,853 | INFO     | [data] control thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:02,854 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:40:44] 2025-11-25 14:40:02,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:40:44] 2025-11-25 14:40:02,944 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:03,081 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:03,268 | INFO     | [job] validate thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:03,515 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:03,669 | INFO     | [payload] control thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:03,858 | INFO     | [job] control thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:03,905 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:04,005 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:04,098 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:04,861 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:05,542 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:40:44] 2025-11-25 14:40:31,176 | INFO     | PID=16664 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 15:40:44] 2025-11-25 14:40:31,176 | INFO     | .. there are 9 such processes running
[2025-11-25 15:40:44] 2025-11-25 14:40:31,177 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:40:44] 2025-11-25 14:40:31,177 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:40:44] 2025-11-25 14:40:31,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:40:44] 2025-11-25 14:40:35,480 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:40:44] 2025-11-25 14:40:36,918 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630698030912)>', '<ExcThread(monitor, started 140630030276352)>']
[2025-11-25 15:40:44] 2025-11-25 14:40:37,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:40:44] 2025-11-25 14:40:37,214 | INFO     | [monitor] control thread has ended
[2025-11-25 15:40:44] 2025-11-25 14:40:41,944 | INFO     | all workflow threads have been joined
[2025-11-25 15:40:44] 2025-11-25 14:40:41,944 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:40:44] 2025-11-25 14:40:41,944 | INFO     | traces error code: 0
[2025-11-25 15:40:44] 2025-11-25 14:40:41,945 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:40:44] 2025-11-25 14:40:42,221 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:40:44] 2025-11-25 14:40:42,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:40:44] 2025-11-25 14:40:42,229 [wrapper] pilotpid: 16664
[2025-11-25 15:40:44] 2025-11-25 14:40:42,232 [wrapper] Pilot exit status: 0
[2025-11-25 15:40:44] 2025-11-25 14:40:42,263 [wrapper] pandaids: 6894269257
[2025-11-25 15:40:44] 2025-11-25 14:40:42,319 [wrapper] cleanup supervisor_pilot 11748 16665
[2025-11-25 15:40:44] 2025-11-25 14:40:42,325 [wrapper] Test setup, not cleaning
[2025-11-25 15:40:44] 2025-11-25 14:40:42,329 [wrapper] apfmon messages muted
[2025-11-25 15:40:44] 2025-11-25 14:40:42,333 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:40:44] 2025-11-25 14:40:42,345 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:40:44]  *** Error codes and diagnostics ***
[2025-11-25 15:40:44]     "exeErrorCode": 0,
[2025-11-25 15:40:44]     "exeErrorDiag": "",
[2025-11-25 15:40:44]     "pilotErrorCode": 0,
[2025-11-25 15:40:44]     "pilotErrorDiag": "",
[2025-11-25 15:40:44]  *** Listing of results directory ***
[2025-11-25 15:40:44] total 1332772
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc    576529 Nov 21 07:04 pilot3.tar.gz
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc      5112 Nov 21 07:22 queuedata.json
[2025-11-25 15:40:44] -rwx------. 1 boinc boinc     36292 Nov 21 07:22 runpilot2-wrapper.sh
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc       100 Nov 24 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:40:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 16:12 run_atlas
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc       105 Nov 24 16:12 job.xml
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc      6392 Nov 24 16:12 init_data.xml
[2025-11-25 15:40:44] -rw-r--r--. 2 boinc boinc 410527447 Nov 24 16:12 EVNT.47493127._002283.pool.root.1
[2025-11-25 15:40:44] -rw-r--r--. 2 boinc boinc     15847 Nov 24 16:12 start_atlas.sh
[2025-11-25 15:40:44] drwxrwx--x. 2 boinc boinc        68 Nov 24 16:12 shared
[2025-11-25 15:40:44] -rw-r--r--. 2 boinc boinc    590098 Nov 24 16:12 input.tar.gz
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc         0 Nov 24 16:12 boinc_lockfile
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc      2782 Nov 24 16:13 pandaJob.out
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc    987541 Nov 24 16:17 agis_schedconf.cvmfs.json
[2025-11-25 15:40:44] drwx------. 5 boinc boinc      4096 Nov 24 16:17 pilot3
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc       533 Nov 25 15:14 boinc_task_state.xml
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc 922826109 Nov 25 15:36 HITS.47533967._002541.pool.root.1
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc      1035 Nov 25 15:38 memory_monitor_summary.json
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc   1516240 Nov 25 15:38 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc   2472265 Nov 25 15:38 log.47533967._002541.job.log.tgz.1
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc      7941 Nov 25 15:39 heartbeat.json
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc      8192 Nov 25 15:40 boinc_mmap_file
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc        29 Nov 25 15:40 wrapper_checkpoint.txt
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc        95 Nov 25 15:40 pilot_heartbeat.json
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc      5070 Nov 25 15:40 pilotlog.txt
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc  11278266 Nov 25 15:40 log.47533967._002541.job.log.1
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc       353 Nov 25 15:40 output.list
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc       620 Nov 25 15:40 runtime_log
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc  13772800 Nov 25 15:40 result.tar.gz
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc       662 Nov 25 15:40 xc9KDmjiZg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmz9IKDmvyEjSn.diag
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc      8817 Nov 25 15:40 runtime_log.err
[2025-11-25 15:40:44] -rw-r--r--. 1 boinc boinc     21412 Nov 25 15:40 stderr.txt
[2025-11-25 15:40:44] HITS file was successfully produced:
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc 922826109 Nov 25 15:36 shared/HITS.pool.root.1
[2025-11-25 15:40:44]  *** Contents of shared directory: ***
[2025-11-25 15:40:44] total 1316156
[2025-11-25 15:40:44] -rw-r--r--. 2 boinc boinc 410527447 Nov 24 16:12 ATLAS.root_0
[2025-11-25 15:40:44] -rw-r--r--. 2 boinc boinc     15847 Nov 24 16:12 start_atlas.sh
[2025-11-25 15:40:44] -rw-r--r--. 2 boinc boinc    590098 Nov 24 16:12 input.tar.gz
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc 922826109 Nov 25 15:36 HITS.pool.root.1
[2025-11-25 15:40:44] -rw-------. 1 boinc boinc  13772800 Nov 25 15:40 result.tar.gz
15:40:46 (12895): run_atlas exited; CPU time 341062.062368
15:40:46 (12895): called boinc_finish(0)

</stderr_txt>
]]>

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