Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:01:48 (19577): wrapper (7.7.26015): starting
21:01:48 (19577): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 21:01:48] Arguments: --nthreads 8
[2025-11-24 21:01:48] Threads: 8
[2025-11-24 21:01:48] Checking for CVMFS
[2025-11-24 21:01:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:01:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:01:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:01:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:01:51] 2.11.2.0 21240 282778 144456 153257 2 85 13718310 25165825 1027 130560 114 131646257 99.874 83487604 3012 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 21:01:51] CVMFS is ok
[2025-11-24 21:01:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:01:51] Checking for apptainer binary...
[2025-11-24 21:01:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:01:51] Running /usr/bin/apptainer --version
[2025-11-24 21:01:52] apptainer version 1.3.2-1.el7
[2025-11-24 21:01:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:02:00] cg-vwn384.simple-grid.lan
[2025-11-24 21:02:00] apptainer works
[2025-11-24 21:02:00] Set ATHENA_PROC_NUMBER=8
[2025-11-24 21:02:00] Set ATHENA_CORE_NUMBER=8
[2025-11-24 21:02:00] Starting ATLAS job with PandaID=6894268526
[2025-11-24 21:02:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:50:15]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:50:15] 2025-11-25 20:49:05,240 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:50:15] 2025-11-25 20:49:07,068 | INFO     | time since job start (88956s) is within the limit (172800.0s)
[2025-11-25 21:50:15] 2025-11-25 20:49:07,751 | INFO     | monitor loop #5972: job 0:6894268526 is in state 'finished'
[2025-11-25 21:50:15] 2025-11-25 20:49:07,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:50:15] 2025-11-25 20:49:09,077 | INFO     | time since job start (88958s) is within the limit (172800.0s)
[2025-11-25 21:50:15] 2025-11-25 20:49:10,258 | INFO     | monitor loop #5973: job 0:6894268526 is in state 'finished'
[2025-11-25 21:50:15] 2025-11-25 20:49:10,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:50:15] 2025-11-25 20:49:11,088 | INFO     | time since job start (88960s) is within the limit (172800.0s)
[2025-11-25 21:50:15] 2025-11-25 20:49:12,768 | INFO     | monitor loop #5974: job 0:6894268526 is in state 'finished'
[2025-11-25 21:50:15] 2025-11-25 20:49:12,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:50:15] 2025-11-25 20:49:13,096 | INFO     | time since job start (88962s) is within the limit (172800.0s)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,070 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:50:15] 2025-11-25 20:49:15,071 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 21:50:15] 2025-11-25 20:49:15,073 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6894268526/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,074 | INFO     | extracted standard info from prmon json
[2025-11-25 21:50:15] 2025-11-25 20:49:15,074 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:50:15] 2025-11-25 20:49:15,075 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:50:15] 2025-11-25 20:49:15,112 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:50:15] 2025-11-25 20:49:15,114 | INFO     | sum of square deviations: 941427203207.8778
[2025-11-25 21:50:15] 2025-11-25 20:49:15,125 | INFO     | time since job start (88964s) is within the limit (172800.0s)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,204 | INFO     | sum of deviations: 3682737739766.298
[2025-11-25 21:50:15] 2025-11-25 20:49:15,212 | INFO     | mean x: 1764059461.7292817
[2025-11-25 21:50:15] 2025-11-25 20:49:15,213 | INFO     | mean y: 2832131.268646409
[2025-11-25 21:50:15] 2025-11-25 20:49:15,213 | INFO     | intersect: -6897933358.368189
[2025-11-25 21:50:15] 2025-11-25 20:49:15,215 | INFO     | chi2: 29.486179624618252
[2025-11-25 21:50:15] 2025-11-25 20:49:15,217 | INFO     | sum of square deviations: 931709089460.2965
[2025-11-25 21:50:15] 2025-11-25 20:49:15,279 | INFO     | monitor loop #5975: job 0:6894268526 is in state 'finished'
[2025-11-25 21:50:15] 2025-11-25 20:49:15,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,304 | INFO     | sum of deviations: 4155775403637.5244
[2025-11-25 21:50:15] 2025-11-25 20:49:15,305 | INFO     | mean x: 1764059309.2335413
[2025-11-25 21:50:15] 2025-11-25 20:49:15,305 | INFO     | mean y: 2839553.3693693695
[2025-11-25 21:50:15] 2025-11-25 20:49:15,305 | INFO     | intersect: -7865533065.080817
[2025-11-25 21:50:15] 2025-11-25 20:49:15,307 | INFO     | chi2: 26.31629335622772
[2025-11-25 21:50:15] 2025-11-25 20:49:15,307 | INFO     | current chi2=26.31629335622772 (change=10.750413613243973 %)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,307 | INFO     | right removable region: 1442
[2025-11-25 21:50:15] 2025-11-25 20:49:15,309 | INFO     | sum of square deviations: 931708003660.2953
[2025-11-25 21:50:15] 2025-11-25 20:49:15,380 | INFO     | sum of deviations: 3065501237922.6426
[2025-11-25 21:50:15] 2025-11-25 20:49:15,380 | INFO     | mean x: 1764059614.2335413
[2025-11-25 21:50:15] 2025-11-25 20:49:15,381 | INFO     | mean y: 2841816.09009009
[2025-11-25 21:50:15] 2025-11-25 20:49:15,381 | INFO     | intersect: -5801258728.240901
[2025-11-25 21:50:15] 2025-11-25 20:49:15,382 | INFO     | chi2: 24.521484251305523
[2025-11-25 21:50:15] 2025-11-25 20:49:15,383 | INFO     | current chi2=24.521484251305523 (change=16.837363932924237 %)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,383 | INFO     | left removable region: 10
[2025-11-25 21:50:15] 2025-11-25 20:49:15,385 | INFO     | sum of square deviations: 910562993899.4294
[2025-11-25 21:50:15] 2025-11-25 20:49:15,441 | INFO     | sum of deviations: 3092803517049.42
[2025-11-25 21:50:15] 2025-11-25 20:49:15,441 | INFO     | mean x: 1764059583.7430167
[2025-11-25 21:50:15] 2025-11-25 20:49:15,442 | INFO     | mean y: 2859780.441340782
[2025-11-25 21:50:15] 2025-11-25 20:49:15,442 | INFO     | intersect: -5988916429.923447
[2025-11-25 21:50:15] 2025-11-25 20:49:15,443 | INFO     | chi2: 16.659458418658897
[2025-11-25 21:50:15] 2025-11-25 20:49:15,444 | INFO     | current memory leak: 3.40 B/s (using 1432 data points, chi2=16.66)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,447 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | ..............................
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . Timing measurements:
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . get job = 0 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . initial setup = 13 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . payload setup = 181 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . stage-in = 0 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . payload execution = 88476 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . stage-out = 4 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | . log creation = 1 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,448 | INFO     | ..............................
[2025-11-25 21:50:15] 2025-11-25 20:49:15,590 | INFO     | 
[2025-11-25 21:50:15] 2025-11-25 20:49:15,590 | INFO     | job summary report
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | --------------------------------------------------
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | PanDA job id: 6894268526
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | task id: 47533967
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | errors: (none)
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | pilot state: finished 
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | transexitcode: 0
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | exeerrorcode: 0
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | exeerrordiag: 
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | exitcode: 0
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | exitmsg: OK
[2025-11-25 21:50:15] 2025-11-25 20:49:15,591 | INFO     | cpuconsumptiontime: 341380 s
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | nevents: 1000
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | neventsw: 0
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | pid: 29794
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | pgrp: 29794
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | corecount: 8
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | event service: False
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | sizes: {0: 2283476, 1: 2284162, 2: 2284361, 13: 2284361, 23: 2284417, 34: 2284445, 45: 2284601, 56: 2284629, 66: 2284657, 77: 2284685, 88: 2284741, 99: 2285049, 10
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | --------------------------------------------------
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | 
[2025-11-25 21:50:15] 2025-11-25 20:49:15,592 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-25 21:50:15] 2025-11-25 20:49:16,095 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,095 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,095 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,095 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,096 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:50:15] 2025-11-25 20:49:16,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,097 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:50:15] 2025-11-25 20:49:16,097 | INFO     | job 6894268526 has completed (purged errors)
[2025-11-25 21:50:15] 2025-11-25 20:49:16,097 | INFO     | overall cleanup function is called
[2025-11-25 21:50:15] 2025-11-25 20:49:16,269 | INFO     | PID=23321 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:50:15] 2025-11-25 20:49:16,269 | INFO     | .. there are 9 such processes running
[2025-11-25 21:50:15] 2025-11-25 20:49:17,119 | INFO     | --- collectZombieJob: --- 10, [29794]
[2025-11-25 21:50:15] 2025-11-25 20:49:17,119 | INFO     | zombie collector waiting for pid 29794
[2025-11-25 21:50:15] 2025-11-25 20:49:17,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:50:15] 2025-11-25 20:49:17,120 | INFO     | collected zombie processes
[2025-11-25 21:50:15] 2025-11-25 20:49:17,120 | INFO     | will attempt to kill all subprocesses of pid=29794
[2025-11-25 21:50:15] 2025-11-25 20:49:17,265 | INFO     | process IDs to be killed: [29794] (in reverse order)
[2025-11-25 21:50:15] 2025-11-25 20:49:18,083 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:50:15] 2025-11-25 20:49:18,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:50:15] 2025-11-25 20:49:18,087 | INFO     | did not find any defunct processes belonging to 29794
[2025-11-25 21:50:15] 2025-11-25 20:49:18,090 | INFO     | did not find any defunct processes belonging to 29794
[2025-11-25 21:50:15] 2025-11-25 20:49:18,135 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:50:15] 2025-11-25 20:49:18,136 | INFO     | ready for new job
[2025-11-25 21:50:15] 2025-11-25 20:49:18,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:50:15] 2025-11-25 20:49:18,143 | INFO     | ***************************************
[2025-11-25 21:50:15] 2025-11-25 20:49:18,143 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:50:15] 2025-11-25 20:49:18,143 | INFO     | ***************************************
[2025-11-25 21:50:15] 2025-11-25 20:49:18,143 | INFO     | 
[2025-11-25 21:50:15] 2025-11-25 20:49:18,144 | INFO     | pilot is running in a VM
[2025-11-25 21:50:15] 2025-11-25 20:49:18,144 | INFO     | architecture information:
[2025-11-25 21:50:15] 2025-11-25 20:49:18,150 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:50:15] 2025-11-25 20:49:18,389 | INFO     | cat /etc/os-release:
[2025-11-25 21:50:15] NAME="CentOS Linux"
[2025-11-25 21:50:15] VERSION="7 (Core)"
[2025-11-25 21:50:15] ID="centos"
[2025-11-25 21:50:15] ID_LIKE="rhel fedora"
[2025-11-25 21:50:15] VERSION_ID="7"
[2025-11-25 21:50:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:50:15] ANSI_COLOR="0;31"
[2025-11-25 21:50:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:50:15] HOME_URL="https://www.centos.org/"
[2025-11-25 21:50:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:50:15] 
[2025-11-25 21:50:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:50:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:50:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:50:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:50:15] 
[2025-11-25 21:50:15] 2025-11-25 20:49:18,390 | INFO     | ***************************************
[2025-11-25 21:50:15] 2025-11-25 20:49:18,893 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-25 21:50:15] 2025-11-25 20:49:19,188 | INFO     | sufficient remaining disk space (494760099840 B)
[2025-11-25 21:50:15] 2025-11-25 20:49:19,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:50:15] 2025-11-25 20:49:19,188 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:50:15] 2025-11-25 20:49:19,189 | INFO     | update_server=False
[2025-11-25 21:50:15] 2025-11-25 20:49:19,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:50:15] 2025-11-25 20:49:19,190 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:50:15] 2025-11-25 20:49:19,190 | INFO     | aborting loop
[2025-11-25 21:50:15] 2025-11-25 20:49:19,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:50:15] 2025-11-25 20:49:19,375 | INFO     | all data control threads have been joined
[2025-11-25 21:50:15] 2025-11-25 20:49:19,834 | INFO     | all job control threads have been joined
[2025-11-25 21:50:15] 2025-11-25 20:49:20,064 | INFO     | all payload control threads have been joined
[2025-11-25 21:50:15] 2025-11-25 20:49:20,195 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,196 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,276 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,280 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,381 | INFO     | [data] control thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,429 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,443 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:50:15] 2025-11-25 20:49:20,648 | INFO     | [job] validate thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,766 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:20,840 | INFO     | [job] control thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:21,070 | INFO     | [payload] control thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:21,205 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:21,250 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:21,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:50:15] 2025-11-25 20:49:21,557 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:21,611 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:25,471 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:50:15] 2025-11-25 20:49:48,457 | INFO     | PID=23321 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 21:50:15] 2025-11-25 20:49:48,457 | INFO     | .. there are 9 such processes running
[2025-11-25 21:50:15] 2025-11-25 20:49:48,457 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:50:15] 2025-11-25 20:49:48,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:50:15] 2025-11-25 20:49:48,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:50:15] 2025-11-25 20:50:05,387 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:50:15] 2025-11-25 20:50:06,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042777499456)>', '<ExcThread(monitor, started 140041921730304)>']
[2025-11-25 21:50:15] 2025-11-25 20:50:06,564 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:50:15] 2025-11-25 20:50:06,564 | INFO     | [monitor] control thread has ended
[2025-11-25 21:50:15] 2025-11-25 20:50:11,149 | INFO     | all workflow threads have been joined
[2025-11-25 21:50:15] 2025-11-25 20:50:11,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:50:15] 2025-11-25 20:50:11,150 | INFO     | traces error code: 0
[2025-11-25 21:50:15] 2025-11-25 20:50:11,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:50:15] 2025-11-25 20:50:11,693 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:50:15] 2025-11-25 20:50:11,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:50:15] 2025-11-25 20:50:11,865 [wrapper] pilotpid: 23321
[2025-11-25 21:50:15] 2025-11-25 20:50:11,969 [wrapper] Pilot exit status: 0
[2025-11-25 21:50:15] 2025-11-25 20:50:12,263 [wrapper] pandaids: 6894268526
[2025-11-25 21:50:15] 2025-11-25 20:50:12,974 [wrapper] cleanup supervisor_pilot 23673 23322
[2025-11-25 21:50:15] 2025-11-25 20:50:13,032 [wrapper] Test setup, not cleaning
[2025-11-25 21:50:15] 2025-11-25 20:50:13,101 [wrapper] apfmon messages muted
[2025-11-25 21:50:15] 2025-11-25 20:50:13,160 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:50:15] 2025-11-25 20:50:13,247 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:50:15]  *** Error codes and diagnostics ***
[2025-11-25 21:50:15]     "exeErrorCode": 0,
[2025-11-25 21:50:15]     "exeErrorDiag": "",
[2025-11-25 21:50:15]     "pilotErrorCode": 0,
[2025-11-25 21:50:15]     "pilotErrorDiag": "",
[2025-11-25 21:50:15]  *** Listing of results directory ***
[2025-11-25 21:50:15] total 1329352
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-25 21:50:15] -rwx------. 1 boinc boinc     36292 Nov 21 06:57 runpilot2-wrapper.sh
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc      5112 Nov 21 06:57 queuedata.json
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc       100 Nov 24 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:50:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 21:01 run_atlas
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc       105 Nov 24 21:01 job.xml
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc      6393 Nov 24 21:01 init_data.xml
[2025-11-25 21:50:15] -rw-r--r--. 2 boinc boinc 409435728 Nov 24 21:01 EVNT.47493127._002272.pool.root.1
[2025-11-25 21:50:15] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:01 start_atlas.sh
[2025-11-25 21:50:15] drwxrwx--x. 2 boinc boinc        68 Nov 24 21:01 shared
[2025-11-25 21:50:15] -rw-r--r--. 2 boinc boinc    590098 Nov 24 21:01 input.tar.gz
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc         0 Nov 24 21:01 boinc_lockfile
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc      2783 Nov 24 21:02 pandaJob.out
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc    991801 Nov 24 21:06 agis_schedconf.cvmfs.json
[2025-11-25 21:50:15] drwx------. 5 boinc boinc      4096 Nov 24 21:06 pilot3
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc       533 Nov 25 21:22 boinc_task_state.xml
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc 919119693 Nov 25 21:46 HITS.47533967._002431.pool.root.1
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc      1031 Nov 25 21:47 memory_monitor_summary.json
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc   1516240 Nov 25 21:47 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc   2525073 Nov 25 21:47 log.47533967._002431.job.log.tgz.1
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc        95 Nov 25 21:48 pilot_heartbeat.json
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc      8631 Nov 25 21:49 heartbeat.json
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc        29 Nov 25 21:50 wrapper_checkpoint.txt
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc      8192 Nov 25 21:50 boinc_mmap_file
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc      4885 Nov 25 21:50 pilotlog.txt
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc  11870645 Nov 25 21:50 log.47533967._002431.job.log.1
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc       353 Nov 25 21:50 output.list
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc       620 Nov 25 21:50 runtime_log
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc  14417920 Nov 25 21:50 result.tar.gz
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc       662 Nov 25 21:50 C2SKDmOKZg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmE9IKDmcKpPNn.diag
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc      8833 Nov 25 21:50 runtime_log.err
[2025-11-25 21:50:15] -rw-r--r--. 1 boinc boinc     21527 Nov 25 21:50 stderr.txt
[2025-11-25 21:50:15] HITS file was successfully produced:
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc 919119693 Nov 25 21:46 shared/HITS.pool.root.1
[2025-11-25 21:50:15]  *** Contents of shared directory: ***
[2025-11-25 21:50:15] total 1312096
[2025-11-25 21:50:15] -rw-r--r--. 2 boinc boinc 409435728 Nov 24 21:01 ATLAS.root_0
[2025-11-25 21:50:15] -rw-r--r--. 2 boinc boinc     15847 Nov 24 21:01 start_atlas.sh
[2025-11-25 21:50:15] -rw-r--r--. 2 boinc boinc    590098 Nov 24 21:01 input.tar.gz
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc 919119693 Nov 25 21:46 HITS.pool.root.1
[2025-11-25 21:50:15] -rw-------. 1 boinc boinc  14417920 Nov 25 21:50 result.tar.gz
21:50:16 (19577): run_atlas exited; CPU time 341787.256871
21:50:16 (19577): called boinc_finish(0)

</stderr_txt>
]]>

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