Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:26:56 (8966): wrapper (7.7.26015): starting
18:26:56 (8966): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 18:26:56] Arguments: --nthreads 12
[2025-11-21 18:26:56] Threads: 12
[2025-11-21 18:26:56] Checking for CVMFS
[2025-11-21 18:26:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 18:26:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 18:26:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 18:26:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 18:26:56] 2.11.2.0 3035 281094 94296 153150 3 9 10205138 20275200 1 130560 3 126197308 99.968 16875625 14147 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 18:26:56] CVMFS is ok
[2025-11-21 18:26:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 18:26:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 18:26:56] Further information can be found at the LHC@home message board.
[2025-11-21 18:26:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:26:56] Checking for apptainer binary...
[2025-11-21 18:26:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 18:26:56] Running /usr/bin/apptainer --version
[2025-11-21 18:26:56] apptainer version 1.3.2-1.el7
[2025-11-21 18:26:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:26:58] c-205-31.aglt2.org
[2025-11-21 18:26:58] apptainer works
[2025-11-21 18:26:58] Set ATHENA_PROC_NUMBER=12
[2025-11-21 18:26:58] Set ATHENA_CORE_NUMBER=12
[2025-11-21 18:26:58] Starting ATLAS job with PandaID=6894268516
[2025-11-21 18:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 01:35:24]  *** The last 200 lines of the pilot log: ***
[2025-11-22 01:35:24] 2025-11-22 06:34:50,776 | INFO     | monitor loop #1923: job 0:6894268516 is in state 'finished'
[2025-11-22 01:35:24] 2025-11-22 06:34:50,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:35:24] 2025-11-22 06:34:51,034 | INFO     | time since job start (25658s) is within the limit (172800.0s)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,309 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 01:35:24] 2025-11-22 06:34:52,313 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-22 01:35:24] 2025-11-22 06:34:52,315 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894268516/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,316 | INFO     | extracted standard info from prmon json
[2025-11-22 01:35:24] 2025-11-22 06:34:52,316 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 01:35:24] 2025-11-22 06:34:52,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 01:35:24] 2025-11-22 06:34:52,322 | INFO     | fitting pss+swap vs Time
[2025-11-22 01:35:24] 2025-11-22 06:34:52,323 | INFO     | sum of square deviations: 22973508742.140434
[2025-11-22 01:35:24] 2025-11-22 06:34:52,327 | INFO     | sum of deviations: 432792644602.7425
[2025-11-22 01:35:24] 2025-11-22 06:34:52,327 | INFO     | mean x: 1763780442.7880952
[2025-11-22 01:35:24] 2025-11-22 06:34:52,327 | INFO     | mean y: 3421723.8285714285
[2025-11-22 01:35:24] 2025-11-22 06:34:52,327 | INFO     | intersect: -33224032162.335392
[2025-11-22 01:35:24] 2025-11-22 06:34:52,328 | INFO     | chi2: 5.009951702429241
[2025-11-22 01:35:24] 2025-11-22 06:34:52,328 | INFO     | sum of square deviations: 22162795561.720467
[2025-11-22 01:35:24] 2025-11-22 06:34:52,332 | INFO     | sum of deviations: 572810332527.3058
[2025-11-22 01:35:24] 2025-11-22 06:34:52,332 | INFO     | mean x: 1763780290.2915664
[2025-11-22 01:35:24] 2025-11-22 06:34:52,332 | INFO     | mean y: 3448028.344578313
[2025-11-22 01:35:24] 2025-11-22 06:34:52,332 | INFO     | intersect: -45582478700.68359
[2025-11-22 01:35:24] 2025-11-22 06:34:52,333 | INFO     | chi2: 2.6576959749926843
[2025-11-22 01:35:24] 2025-11-22 06:34:52,333 | INFO     | current chi2=2.6576959749926843 (change=46.95166474950223 %)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,333 | INFO     | sum of square deviations: 21371359997.378067
[2025-11-22 01:35:24] 2025-11-22 06:34:52,337 | INFO     | sum of deviations: 585863702363.4028
[2025-11-22 01:35:24] 2025-11-22 06:34:52,337 | INFO     | mean x: 1763780137.792683
[2025-11-22 01:35:24] 2025-11-22 06:34:52,337 | INFO     | mean y: 3450504.9341463414
[2025-11-22 01:35:24] 2025-11-22 06:34:52,337 | INFO     | intersect: -48347930118.90206
[2025-11-22 01:35:24] 2025-11-22 06:34:52,338 | INFO     | chi2: 2.468835427996394
[2025-11-22 01:35:24] 2025-11-22 06:34:52,338 | INFO     | current chi2=2.468835427996394 (change=7.106175754238027 %)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,338 | INFO     | right removable region: 409
[2025-11-22 01:35:24] 2025-11-22 06:34:52,339 | INFO     | sum of square deviations: 22162747249.301266
[2025-11-22 01:35:24] 2025-11-22 06:34:52,342 | INFO     | sum of deviations: 295175019942.6626
[2025-11-22 01:35:24] 2025-11-22 06:34:52,343 | INFO     | mean x: 1763780595.2891567
[2025-11-22 01:35:24] 2025-11-22 06:34:52,343 | INFO     | mean y: 3447530.836144578
[2025-11-22 01:35:24] 2025-11-22 06:34:52,343 | INFO     | intersect: -23487501787.523838
[2025-11-22 01:35:24] 2025-11-22 06:34:52,343 | INFO     | chi2: 2.737974167821618
[2025-11-22 01:35:24] 2025-11-22 06:34:52,343 | INFO     | current chi2=2.737974167821618 (change=45.34929016393471 %)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,344 | INFO     | sum of square deviations: 21371263251.37807
[2025-11-22 01:35:24] 2025-11-22 06:34:52,347 | INFO     | sum of deviations: 254555732033.2929
[2025-11-22 01:35:24] 2025-11-22 06:34:52,348 | INFO     | mean x: 1763780747.792683
[2025-11-22 01:35:24] 2025-11-22 06:34:52,348 | INFO     | mean y: 3455350.8975609755
[2025-11-22 01:35:24] 2025-11-22 06:34:52,348 | INFO     | intersect: -21005152990.101833
[2025-11-22 01:35:24] 2025-11-22 06:34:52,348 | INFO     | chi2: 2.6432809182780033
[2025-11-22 01:35:24] 2025-11-22 06:34:52,348 | INFO     | current chi2=2.6432809182780033 (change=3.4585150823009503 %)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,349 | INFO     | left removable region: 20
[2025-11-22 01:35:24] 2025-11-22 06:34:52,349 | INFO     | sum of square deviations: 18252729230.205643
[2025-11-22 01:35:24] 2025-11-22 06:34:52,352 | INFO     | sum of deviations: 354596757289.8175
[2025-11-22 01:35:24] 2025-11-22 06:34:52,352 | INFO     | mean x: 1763780717.3033419
[2025-11-22 01:35:24] 2025-11-22 06:34:52,352 | INFO     | mean y: 3496127.7557840617
[2025-11-22 01:35:24] 2025-11-22 06:34:52,353 | INFO     | intersect: -34261567197.189346
[2025-11-22 01:35:24] 2025-11-22 06:34:52,353 | INFO     | chi2: 0.04630368157317575
[2025-11-22 01:35:24] 2025-11-22 06:34:52,353 | INFO     | current memory leak: 19.43 B/s (using 389 data points, chi2=0.05)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | could have reported an average CPU frequency of 2373 MHz (18 samples)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | ..............................
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | . Timing measurements:
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | . get job = 0 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | . initial setup = 2 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | . payload setup = 7 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | . stage-in = 0 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | . payload execution = 25618 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,354 | INFO     | . stage-out = 3 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,355 | INFO     | . log creation = 0 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,355 | INFO     | ..............................
[2025-11-22 01:35:24] 2025-11-22 06:34:52,436 | INFO     | 
[2025-11-22 01:35:24] 2025-11-22 06:34:52,436 | INFO     | job summary report
[2025-11-22 01:35:24] 2025-11-22 06:34:52,436 | INFO     | --------------------------------------------------
[2025-11-22 01:35:24] 2025-11-22 06:34:52,436 | INFO     | PanDA job id: 6894268516
[2025-11-22 01:35:24] 2025-11-22 06:34:52,436 | INFO     | task id: 47533967
[2025-11-22 01:35:24] 2025-11-22 06:34:52,436 | INFO     | errors: (none)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | pilot state: finished 
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | transexitcode: 0
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | exeerrorcode: 0
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | exeerrordiag: 
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | exitcode: 0
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | exitmsg: OK
[2025-11-22 01:35:24] 2025-11-22 06:34:52,437 | INFO     | cpuconsumptiontime: 294706 s
[2025-11-22 01:35:24] 2025-11-22 06:34:52,438 | INFO     | nevents: 1000
[2025-11-22 01:35:24] 2025-11-22 06:34:52,438 | INFO     | neventsw: 0
[2025-11-22 01:35:24] 2025-11-22 06:34:52,438 | INFO     | pid: 19070
[2025-11-22 01:35:24] 2025-11-22 06:34:52,438 | INFO     | pgrp: 19070
[2025-11-22 01:35:24] 2025-11-22 06:34:52,438 | INFO     | corecount: 12
[2025-11-22 01:35:24] 2025-11-22 06:34:52,438 | INFO     | event service: False
[2025-11-22 01:35:24] 2025-11-22 06:34:52,438 | INFO     | sizes: {0: 2298750, 5: 2299012, 11: 2299068, 25629: 2336246, 25634: 2345240, 25637: 2345296, 25643: 2345670}
[2025-11-22 01:35:24] 2025-11-22 06:34:52,439 | INFO     | --------------------------------------------------
[2025-11-22 01:35:24] 2025-11-22 06:34:52,439 | INFO     | 
[2025-11-22 01:35:24] 2025-11-22 06:34:52,439 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 01:35:24] 2025-11-22 06:34:52,463 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,464 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,464 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,464 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,464 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,465 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,465 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,465 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,465 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,465 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,465 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,465 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,466 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,466 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,466 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,466 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,466 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,466 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,467 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 01:35:24] 2025-11-22 06:34:52,467 | INFO     | job 6894268516 has completed (purged errors)
[2025-11-22 01:35:24] 2025-11-22 06:34:52,467 | INFO     | overall cleanup function is called
[2025-11-22 01:35:24] 2025-11-22 06:34:53,481 | INFO     | --- collectZombieJob: --- 10, [19070]
[2025-11-22 01:35:24] 2025-11-22 06:34:53,481 | INFO     | zombie collector waiting for pid 19070
[2025-11-22 01:35:24] 2025-11-22 06:34:53,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 01:35:24] 2025-11-22 06:34:53,481 | INFO     | collected zombie processes
[2025-11-22 01:35:24] 2025-11-22 06:34:53,481 | INFO     | will attempt to kill all subprocesses of pid=19070
[2025-11-22 01:35:24] 2025-11-22 06:34:53,572 | INFO     | process IDs to be killed: [19070] (in reverse order)
[2025-11-22 01:35:24] 2025-11-22 06:34:53,623 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 01:35:24] 2025-11-22 06:34:53,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 01:35:24] 2025-11-22 06:34:53,626 | INFO     | did not find any defunct processes belonging to 19070
[2025-11-22 01:35:24] 2025-11-22 06:34:53,629 | INFO     | did not find any defunct processes belonging to 19070
[2025-11-22 01:35:24] 2025-11-22 06:34:53,631 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 01:35:24] 2025-11-22 06:34:53,631 | INFO     | ready for new job
[2025-11-22 01:35:24] 2025-11-22 06:34:53,631 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 01:35:24] 2025-11-22 06:34:53,633 | INFO     | ***************************************
[2025-11-22 01:35:24] 2025-11-22 06:34:53,634 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 01:35:24] 2025-11-22 06:34:53,634 | INFO     | ***************************************
[2025-11-22 01:35:24] 2025-11-22 06:34:53,634 | INFO     | 
[2025-11-22 01:35:24] 2025-11-22 06:34:53,634 | INFO     | architecture information:
[2025-11-22 01:35:24] 2025-11-22 06:34:53,635 | INFO     | executing command: cat /etc/os-release
[2025-11-22 01:35:24] 2025-11-22 06:34:53,649 | INFO     | cat /etc/os-release:
[2025-11-22 01:35:24] NAME="CentOS Linux"
[2025-11-22 01:35:24] VERSION="7 (Core)"
[2025-11-22 01:35:24] ID="centos"
[2025-11-22 01:35:24] ID_LIKE="rhel fedora"
[2025-11-22 01:35:24] VERSION_ID="7"
[2025-11-22 01:35:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 01:35:24] ANSI_COLOR="0;31"
[2025-11-22 01:35:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 01:35:24] HOME_URL="https://www.centos.org/"
[2025-11-22 01:35:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 01:35:24] 
[2025-11-22 01:35:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 01:35:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 01:35:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 01:35:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 01:35:24] 
[2025-11-22 01:35:24] 2025-11-22 06:34:53,649 | INFO     | ***************************************
[2025-11-22 01:35:24] 2025-11-22 06:34:54,152 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 01:35:24] 2025-11-22 06:34:54,170 | INFO     | sufficient remaining disk space (28259123200 B)
[2025-11-22 01:35:24] 2025-11-22 06:34:54,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 01:35:24] 2025-11-22 06:34:54,171 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 01:35:24] 2025-11-22 06:34:54,171 | INFO     | update_server=False
[2025-11-22 01:35:24] 2025-11-22 06:34:54,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 01:35:24] 2025-11-22 06:34:54,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:35:24] 2025-11-22 06:34:54,172 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 01:35:24] 2025-11-22 06:34:54,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:35:24] 2025-11-22 06:34:54,281 | INFO     | aborting loop
[2025-11-22 01:35:24] 2025-11-22 06:34:54,283 | INFO     | all data control threads have been joined
[2025-11-22 01:35:24] 2025-11-22 06:34:54,659 | INFO     | all payload control threads have been joined
[2025-11-22 01:35:24] 2025-11-22 06:34:54,810 | INFO     | [monitor] cgroup control has ended
[2025-11-22 01:35:24] 2025-11-22 06:34:55,175 | INFO     | [job] retrieve thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,177 | INFO     | [job] queue monitor thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,285 | INFO     | [job] job monitor thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,289 | INFO     | [data] control thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,374 | INFO     | [payload] failed_post thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,437 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,515 | INFO     | [data] copytool_in thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,553 | INFO     | all job control threads have been joined
[2025-11-22 01:35:24] 2025-11-22 06:34:55,664 | INFO     | [payload] control thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,714 | INFO     | [job] validate thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:55,873 | INFO     | [payload] validate_post thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:56,048 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:56,178 | INFO     | [data] copytool_out thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:56,286 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:56,559 | INFO     | [job] control thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:34:57,240 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 01:35:24] 2025-11-22 06:35:01,246 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:35:04,545 | INFO     | job.realtimelogging is not enabled
[2025-11-22 01:35:24] 2025-11-22 06:35:05,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 01:35:24] 2025-11-22 06:35:06,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139819863861056)>', '<ExcThread(monitor, started 139819413915392)>']
[2025-11-22 01:35:24] 2025-11-22 06:35:11,110 | INFO     | all workflow threads have been joined
[2025-11-22 01:35:24] 2025-11-22 06:35:11,110 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 01:35:24] 2025-11-22 06:35:11,110 | INFO     | traces error code: 0
[2025-11-22 01:35:24] 2025-11-22 06:35:11,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 01:35:24] 2025-11-22 06:35:24,232 | INFO     | PID=12696 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 01:35:24] 2025-11-22 06:35:24,233 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 01:35:24] 2025-11-22 06:35:24,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 01:35:24] 2025-11-22 06:35:24,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 01:35:24] 2025-11-22 06:35:24,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 01:35:24] 2025-11-22 06:35:24,233 | INFO     | [monitor] control thread has ended
[2025-11-22 01:35:24] 2025-11-22 06:35:24,321 [wrapper] ==== pilot stdout END ====
[2025-11-22 01:35:24] 2025-11-22 06:35:24,325 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 01:35:24] 2025-11-22 06:35:24,329 [wrapper] pilotpid: 12696
[2025-11-22 01:35:24] 2025-11-22 06:35:24,332 [wrapper] Pilot exit status: 0
[2025-11-22 01:35:24] 2025-11-22 06:35:24,346 [wrapper] pandaids: 6894268516
[2025-11-22 01:35:24] 2025-11-22 06:35:24,385 [wrapper] cleanup supervisor_pilot 21590 12697
[2025-11-22 01:35:24] 2025-11-22 06:35:24,389 [wrapper] Test setup, not cleaning
[2025-11-22 01:35:24] 2025-11-22 06:35:24,393 [wrapper] apfmon messages muted
[2025-11-22 01:35:24] 2025-11-22 06:35:24,397 [wrapper] ==== wrapper stdout END ====
[2025-11-22 01:35:24] 2025-11-22 06:35:24,401 [wrapper] ==== wrapper stderr END ====
[2025-11-22 01:35:24]  *** Error codes and diagnostics ***
[2025-11-22 01:35:24]     "exeErrorCode": 0,
[2025-11-22 01:35:24]     "exeErrorDiag": "",
[2025-11-22 01:35:24]     "pilotErrorCode": 0,
[2025-11-22 01:35:24]     "pilotErrorDiag": "",
[2025-11-22 01:35:24]  *** Listing of results directory ***
[2025-11-22 01:35:24] total 1305316
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 00:09 pilot3.tar.gz
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 00:55 queuedata.json
[2025-11-22 01:35:24] -rwx------ 1 boincer umatlas     36292 Nov 21 00:56 runpilot2-wrapper.sh
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas       100 Nov 21 18:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 01:35:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 18:26 run_atlas
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas       105 Nov 21 18:26 job.xml
[2025-11-22 01:35:24] -rw-r--r-- 2 boincer umatlas 408534823 Nov 21 18:26 EVNT.47493127._002271.pool.root.1
[2025-11-22 01:35:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:26 start_atlas.sh
[2025-11-22 01:35:24] drwxrwx--x 2 boincer umatlas      4096 Nov 21 18:26 shared
[2025-11-22 01:35:24] -rw-r--r-- 2 boincer umatlas    590105 Nov 21 18:26 input.tar.gz
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas         0 Nov 21 18:26 boinc_lockfile
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas      2782 Nov 21 18:26 pandaJob.out
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas        57 Nov 21 18:26 setup.sh.local
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas    989798 Nov 21 18:27 agis_schedconf.cvmfs.json
[2025-11-22 01:35:24] drwx------ 5 boincer umatlas      4096 Nov 21 18:27 pilot3
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas       532 Nov 22 01:26 boinc_task_state.xml
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 01:30 init_data.xml
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas 912638862 Nov 22 01:34 HITS.47533967._002421.pool.root.1
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas      1060 Nov 22 01:34 memory_monitor_summary.json
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas   1526164 Nov 22 01:34 agis_ddmendpoints.agis.ALL.json
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas   2174610 Nov 22 01:34 log.47533967._002421.job.log.tgz.1
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas      8675 Nov 22 01:34 heartbeat.json
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas        29 Nov 22 01:35 wrapper_checkpoint.txt
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 01:35 boinc_mmap_file
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas       745 Nov 22 01:35 pilotlog.txt
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas        95 Nov 22 01:35 pilot_heartbeat.json
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas   3600695 Nov 22 01:35 log.47533967._002421.job.log.1
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas       353 Nov 22 01:35 output.list
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas       620 Nov 22 01:35 runtime_log
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas   5795840 Nov 22 01:35 result.tar.gz
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas      9345 Nov 22 01:35 runtime_log.err
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas       670 Nov 22 01:35 oajMDmKJZg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmC9IKDmlgzRxm.diag
[2025-11-22 01:35:24] -rw-r--r-- 1 boincer umatlas     21295 Nov 22 01:35 stderr.txt
[2025-11-22 01:35:24] HITS file was successfully produced:
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas 912638862 Nov 22 01:34 shared/HITS.pool.root.1
[2025-11-22 01:35:24]  *** Contents of shared directory: ***
[2025-11-22 01:35:24] total 1296472
[2025-11-22 01:35:24] -rw-r--r-- 2 boincer umatlas 408534823 Nov 21 18:26 ATLAS.root_0
[2025-11-22 01:35:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:26 start_atlas.sh
[2025-11-22 01:35:24] -rw-r--r-- 2 boincer umatlas    590105 Nov 21 18:26 input.tar.gz
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas 912638862 Nov 22 01:34 HITS.pool.root.1
[2025-11-22 01:35:24] -rw------- 1 boincer umatlas   5795840 Nov 22 01:35 result.tar.gz
01:35:26 (8966): run_atlas exited; CPU time 288037.190767
01:35:26 (8966): called boinc_finish(0)

</stderr_txt>
]]>

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