Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:04:23 (24893): wrapper (7.7.26015): starting
18:04:23 (24893): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 18:04:23] Arguments: --nthreads 8
[2025-11-21 18:04:23] Threads: 8
[2025-11-21 18:04:23] Checking for CVMFS
[2025-11-21 18:04:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 18:04:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 18:04:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 18:04:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 18:04:23] 2.11.2.0 6491 2383 63532 153148 2 81 10922143 18432000 1765 130560 0 2122232 99.991 87192 7768 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 18:04:23] CVMFS is ok
[2025-11-21 18:04:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 18:04:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 18:04:23] Further information can be found at the LHC@home message board.
[2025-11-21 18:04:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:04:23] Checking for apptainer binary...
[2025-11-21 18:04:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 18:04:23] Running /usr/bin/apptainer --version
[2025-11-21 18:04:23] apptainer version 1.3.2-1.el7
[2025-11-21 18:04:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:04:24] c-206-29.aglt2.org
[2025-11-21 18:04:24] apptainer works
[2025-11-21 18:04:24] Set ATHENA_PROC_NUMBER=8
[2025-11-21 18:04:24] Set ATHENA_CORE_NUMBER=8
[2025-11-21 18:04:24] Starting ATLAS job with PandaID=6894245559
[2025-11-21 18:04:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:58:38]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:58:38] 2025-11-22 18:57:52,102 | INFO     | sum of square deviations: 501743097859.73553
[2025-11-22 13:58:38] 2025-11-22 18:57:52,136 | INFO     | sum of deviations: 2066790594694.891
[2025-11-22 13:58:38] 2025-11-22 18:57:52,137 | INFO     | mean x: 1763802075.0979557
[2025-11-22 13:58:38] 2025-11-22 18:57:52,137 | INFO     | mean y: 2866015.6618398638
[2025-11-22 13:58:38] 2025-11-22 18:57:52,137 | INFO     | intersect: -7262624143.078475
[2025-11-22 13:58:38] 2025-11-22 18:57:52,139 | INFO     | chi2: 6.432473654297274
[2025-11-22 13:58:38] 2025-11-22 18:57:52,141 | INFO     | sum of square deviations: 495359871350.4391
[2025-11-22 13:58:38] 2025-11-22 18:57:52,188 | INFO     | sum of deviations: 2437753537601.979
[2025-11-22 13:58:38] 2025-11-22 18:57:52,188 | INFO     | mean x: 1763801922.6005132
[2025-11-22 13:58:38] 2025-11-22 18:57:52,188 | INFO     | mean y: 2874874.366124893
[2025-11-22 13:58:38] 2025-11-22 18:57:52,189 | INFO     | intersect: -8677106337.52895
[2025-11-22 13:58:38] 2025-11-22 18:57:52,190 | INFO     | chi2: 3.4852075409179823
[2025-11-22 13:58:38] 2025-11-22 18:57:52,190 | INFO     | current chi2=3.4852075409179823 (change=45.818549313611925 %)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,192 | INFO     | sum of square deviations: 489031017953.629
[2025-11-22 13:58:38] 2025-11-22 18:57:52,240 | INFO     | sum of deviations: 2640672814948.01
[2025-11-22 13:58:38] 2025-11-22 18:57:52,240 | INFO     | mean x: 1763801770.1030927
[2025-11-22 13:58:38] 2025-11-22 18:57:52,240 | INFO     | mean y: 2879763.8582474226
[2025-11-22 13:58:38] 2025-11-22 18:57:52,241 | INFO     | intersect: -9521308302.49067
[2025-11-22 13:58:38] 2025-11-22 18:57:52,242 | INFO     | chi2: 2.539108510849955
[2025-11-22 13:58:38] 2025-11-22 18:57:52,242 | INFO     | current chi2=2.539108510849955 (change=27.146131728466038 %)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,244 | INFO     | sum of square deviations: 482756305106.80194
[2025-11-22 13:58:38] 2025-11-22 18:57:52,279 | INFO     | sum of deviations: 2759994633285.1055
[2025-11-22 13:58:38] 2025-11-22 18:57:52,279 | INFO     | mean x: 1763801617.6056945
[2025-11-22 13:58:38] 2025-11-22 18:57:52,279 | INFO     | mean y: 2882662.742018982
[2025-11-22 13:58:38] 2025-11-22 18:57:52,279 | INFO     | intersect: -10081051917.240982
[2025-11-22 13:58:38] 2025-11-22 18:57:52,281 | INFO     | chi2: 2.1282897660798104
[2025-11-22 13:58:38] 2025-11-22 18:57:52,281 | INFO     | current chi2=2.1282897660798104 (change=16.179645061038563 %)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,281 | INFO     | right removable region: 1158
[2025-11-22 13:58:38] 2025-11-22 18:57:52,283 | INFO     | sum of square deviations: 495359443130.43933
[2025-11-22 13:58:38] 2025-11-22 18:57:52,318 | INFO     | sum of deviations: 1800298219819.8042
[2025-11-22 13:58:38] 2025-11-22 18:57:52,318 | INFO     | mean x: 1763802227.6005132
[2025-11-22 13:58:38] 2025-11-22 18:57:52,319 | INFO     | mean y: 2872372.997433704
[2025-11-22 13:58:38] 2025-11-22 18:57:52,319 | INFO     | intersect: -6407361760.012245
[2025-11-22 13:58:38] 2025-11-22 18:57:52,321 | INFO     | chi2: 4.688047137474575
[2025-11-22 13:58:38] 2025-11-22 18:57:52,321 | INFO     | current chi2=4.688047137474575 (change=27.11906197481771 %)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,323 | INFO     | sum of square deviations: 489030161513.62866
[2025-11-22 13:58:38] 2025-11-22 18:57:52,369 | INFO     | sum of deviations: 1730893232579.4966
[2025-11-22 13:58:38] 2025-11-22 18:57:52,370 | INFO     | mean x: 1763802380.1030927
[2025-11-22 13:58:38] 2025-11-22 18:57:52,370 | INFO     | mean y: 2874045.029209622
[2025-11-22 13:58:38] 2025-11-22 18:57:52,370 | INFO     | intersect: -6239999797.104901
[2025-11-22 13:58:38] 2025-11-22 18:57:52,372 | INFO     | chi2: 4.649005222953549
[2025-11-22 13:58:38] 2025-11-22 18:57:52,372 | INFO     | current chi2=4.649005222953549 (change=0.8327969701699242 %)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,372 | INFO     | left removable region: 20
[2025-11-22 13:58:38] 2025-11-22 18:57:52,374 | INFO     | sum of square deviations: 456986974263.14905
[2025-11-22 13:58:38] 2025-11-22 18:57:52,419 | INFO     | sum of deviations: 2303388642783.582
[2025-11-22 13:58:38] 2025-11-22 18:57:52,419 | INFO     | mean x: 1763802197.1142354
[2025-11-22 13:58:38] 2025-11-22 18:57:52,419 | INFO     | mean y: 2894357.7108963095
[2025-11-22 13:58:38] 2025-11-22 18:57:52,420 | INFO     | intersect: -8887341420.891848
[2025-11-22 13:58:38] 2025-11-22 18:57:52,421 | INFO     | chi2: 0.270607906888274
[2025-11-22 13:58:38] 2025-11-22 18:57:52,422 | INFO     | current memory leak: 5.04 B/s (using 1138 data points, chi2=0.27)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,423 | INFO     | could have reported an average CPU frequency of 2612 MHz (42 samples)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,423 | INFO     | ..............................
[2025-11-22 13:58:38] 2025-11-22 18:57:52,423 | INFO     | . Timing measurements:
[2025-11-22 13:58:38] 2025-11-22 18:57:52,423 | INFO     | . get job = 0 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,424 | INFO     | . initial setup = 2 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,424 | INFO     | . payload setup = 5 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,424 | INFO     | . stage-in = 0 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,424 | INFO     | . payload execution = 71565 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,424 | INFO     | . stage-out = 4 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,424 | INFO     | . log creation = 0 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,424 | INFO     | ..............................
[2025-11-22 13:58:38] 2025-11-22 18:57:52,435 | INFO     | time since job start (71598s) is within the limit (172800.0s)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,979 | INFO     | 
[2025-11-22 13:58:38] 2025-11-22 18:57:52,979 | INFO     | job summary report
[2025-11-22 13:58:38] 2025-11-22 18:57:52,980 | INFO     | --------------------------------------------------
[2025-11-22 13:58:38] 2025-11-22 18:57:52,980 | INFO     | PanDA job id: 6894245559
[2025-11-22 13:58:38] 2025-11-22 18:57:52,980 | INFO     | task id: 47533967
[2025-11-22 13:58:38] 2025-11-22 18:57:52,980 | INFO     | errors: (none)
[2025-11-22 13:58:38] 2025-11-22 18:57:52,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:58:38] 2025-11-22 18:57:52,980 | INFO     | pilot state: finished 
[2025-11-22 13:58:38] 2025-11-22 18:57:52,981 | INFO     | transexitcode: 0
[2025-11-22 13:58:38] 2025-11-22 18:57:52,981 | INFO     | exeerrorcode: 0
[2025-11-22 13:58:38] 2025-11-22 18:57:52,981 | INFO     | exeerrordiag: 
[2025-11-22 13:58:38] 2025-11-22 18:57:52,981 | INFO     | exitcode: 0
[2025-11-22 13:58:38] 2025-11-22 18:57:52,981 | INFO     | exitmsg: OK
[2025-11-22 13:58:38] 2025-11-22 18:57:52,981 | INFO     | cpuconsumptiontime: 558168 s
[2025-11-22 13:58:38] 2025-11-22 18:57:52,982 | INFO     | nevents: 1000
[2025-11-22 13:58:38] 2025-11-22 18:57:52,982 | INFO     | neventsw: 0
[2025-11-22 13:58:38] 2025-11-22 18:57:52,982 | INFO     | pid: 2651
[2025-11-22 13:58:38] 2025-11-22 18:57:52,982 | INFO     | pgrp: 2651
[2025-11-22 13:58:38] 2025-11-22 18:57:52,982 | INFO     | corecount: 8
[2025-11-22 13:58:38] 2025-11-22 18:57:52,983 | INFO     | event service: False
[2025-11-22 13:58:38] 2025-11-22 18:57:52,983 | INFO     | sizes: {0: 2298633, 1: 2298832, 4: 2299094, 11: 2299122, 71575: 2356114, 71580: 2365292, 71584: 2365482}
[2025-11-22 13:58:38] 2025-11-22 18:57:52,983 | INFO     | --------------------------------------------------
[2025-11-22 13:58:38] 2025-11-22 18:57:52,983 | INFO     | 
[2025-11-22 13:58:38] 2025-11-22 18:57:52,983 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 13:58:38] 2025-11-22 18:57:53,003 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,004 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,004 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,004 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,005 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,005 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,005 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,005 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,005 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,006 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:58:38] 2025-11-22 18:57:53,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,007 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:58:38] 2025-11-22 18:57:53,007 | INFO     | job 6894245559 has completed (purged errors)
[2025-11-22 13:58:38] 2025-11-22 18:57:53,007 | INFO     | overall cleanup function is called
[2025-11-22 13:58:38] 2025-11-22 18:57:53,639 | INFO     | PID=28625 has CPU usage=21.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 13:58:38] 2025-11-22 18:57:53,639 | INFO     | .. there are 3 such processes running
[2025-11-22 13:58:38] 2025-11-22 18:57:54,024 | INFO     | --- collectZombieJob: --- 10, [2651]
[2025-11-22 13:58:38] 2025-11-22 18:57:54,025 | INFO     | zombie collector waiting for pid 2651
[2025-11-22 13:58:38] 2025-11-22 18:57:54,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:58:38] 2025-11-22 18:57:54,025 | INFO     | collected zombie processes
[2025-11-22 13:58:38] 2025-11-22 18:57:54,025 | INFO     | will attempt to kill all subprocesses of pid=2651
[2025-11-22 13:58:38] 2025-11-22 18:57:54,180 | INFO     | process IDs to be killed: [2651] (in reverse order)
[2025-11-22 13:58:38] 2025-11-22 18:57:54,220 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:58:38] 2025-11-22 18:57:54,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:58:38] 2025-11-22 18:57:54,223 | INFO     | did not find any defunct processes belonging to 2651
[2025-11-22 13:58:38] 2025-11-22 18:57:54,226 | INFO     | did not find any defunct processes belonging to 2651
[2025-11-22 13:58:38] 2025-11-22 18:57:54,227 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:58:38] 2025-11-22 18:57:54,227 | INFO     | ready for new job
[2025-11-22 13:58:38] 2025-11-22 18:57:54,227 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:58:38] 2025-11-22 18:57:54,231 | INFO     | ***************************************
[2025-11-22 13:58:38] 2025-11-22 18:57:54,231 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:58:38] 2025-11-22 18:57:54,231 | INFO     | ***************************************
[2025-11-22 13:58:38] 2025-11-22 18:57:54,231 | INFO     | 
[2025-11-22 13:58:38] 2025-11-22 18:57:54,232 | INFO     | architecture information:
[2025-11-22 13:58:38] 2025-11-22 18:57:54,232 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:58:38] 2025-11-22 18:57:54,243 | INFO     | cat /etc/os-release:
[2025-11-22 13:58:38] NAME="CentOS Linux"
[2025-11-22 13:58:38] VERSION="7 (Core)"
[2025-11-22 13:58:38] ID="centos"
[2025-11-22 13:58:38] ID_LIKE="rhel fedora"
[2025-11-22 13:58:38] VERSION_ID="7"
[2025-11-22 13:58:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:58:38] ANSI_COLOR="0;31"
[2025-11-22 13:58:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:58:38] HOME_URL="https://www.centos.org/"
[2025-11-22 13:58:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:58:38] 
[2025-11-22 13:58:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:58:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:58:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:58:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:58:38] 
[2025-11-22 13:58:38] 2025-11-22 18:57:54,243 | INFO     | ***************************************
[2025-11-22 13:58:38] 2025-11-22 18:57:54,746 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 13:58:38] 2025-11-22 18:57:54,779 | INFO     | sufficient remaining disk space (25378684928 B)
[2025-11-22 13:58:38] 2025-11-22 18:57:54,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:58:38] 2025-11-22 18:57:54,780 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:58:38] 2025-11-22 18:57:54,780 | INFO     | update_server=False
[2025-11-22 13:58:38] 2025-11-22 18:57:54,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:58:38] 2025-11-22 18:57:54,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:58:38] 2025-11-22 18:57:54,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:58:38] 2025-11-22 18:57:54,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:58:38] 2025-11-22 18:57:54,782 | INFO     | aborting loop
[2025-11-22 13:58:38] 2025-11-22 18:57:55,524 | INFO     | all data control threads have been joined
[2025-11-22 13:58:38] 2025-11-22 18:57:55,786 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:55,787 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:55,959 | INFO     | all payload control threads have been joined
[2025-11-22 13:58:38] 2025-11-22 18:57:55,968 | INFO     | all job control threads have been joined
[2025-11-22 13:58:38] 2025-11-22 18:57:56,109 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,195 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,283 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,473 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,522 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,531 | INFO     | [data] control thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,732 | INFO     | [job] validate thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,787 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,965 | INFO     | [payload] control thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:56,973 | INFO     | [job] control thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:57,242 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:57,382 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:57,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:58:38] 2025-11-22 18:57:58,568 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:57:58,787 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:58:38] 2025-11-22 18:58:25,854 | INFO     | PID=28625 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 13:58:38] 2025-11-22 18:58:25,854 | INFO     | .. there are 3 such processes running
[2025-11-22 13:58:38] 2025-11-22 18:58:25,855 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:58:38] 2025-11-22 18:58:25,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:58:38] 2025-11-22 18:58:25,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:58:38] 2025-11-22 18:58:32,962 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:58:38] 2025-11-22 18:58:33,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140458073704256)>', '<ExcThread(monitor, started 140457501779712)>']
[2025-11-22 13:58:38] 2025-11-22 18:58:33,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:58:38] 2025-11-22 18:58:33,896 | INFO     | [monitor] control thread has ended
[2025-11-22 13:58:38] 2025-11-22 18:58:38,584 | INFO     | all workflow threads have been joined
[2025-11-22 13:58:38] 2025-11-22 18:58:38,585 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:58:38] 2025-11-22 18:58:38,585 | INFO     | traces error code: 0
[2025-11-22 13:58:38] 2025-11-22 18:58:38,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:58:38] 2025-11-22 18:58:38,708 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:58:38] 2025-11-22 18:58:38,711 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:58:38] 2025-11-22 18:58:38,713 [wrapper] pilotpid: 28625
[2025-11-22 13:58:38] 2025-11-22 18:58:38,716 [wrapper] Pilot exit status: 0
[2025-11-22 13:58:38] 2025-11-22 18:58:38,726 [wrapper] pandaids: 6894245559
[2025-11-22 13:58:38] 2025-11-22 18:58:38,757 [wrapper] cleanup supervisor_pilot 15709 28626
[2025-11-22 13:58:38] 2025-11-22 18:58:38,760 [wrapper] Test setup, not cleaning
[2025-11-22 13:58:38] 2025-11-22 18:58:38,762 [wrapper] apfmon messages muted
[2025-11-22 13:58:38] 2025-11-22 18:58:38,764 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:58:38] 2025-11-22 18:58:38,767 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:58:38]  *** Error codes and diagnostics ***
[2025-11-22 13:58:38]     "exeErrorCode": 0,
[2025-11-22 13:58:38]     "exeErrorDiag": "",
[2025-11-22 13:58:38]     "pilotErrorCode": 0,
[2025-11-22 13:58:38]     "pilotErrorDiag": "",
[2025-11-22 13:58:38]  *** Listing of results directory ***
[2025-11-22 13:58:38] total 1344188
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 20:08 pilot3.tar.gz
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 20:11 queuedata.json
[2025-11-22 13:58:38] -rwx------ 1 boincer umatlas     36292 Nov 20 20:13 runpilot2-wrapper.sh
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas       100 Nov 21 18:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:58:38] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 18:04 run_atlas
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas       105 Nov 21 18:04 job.xml
[2025-11-22 13:58:38] -rw-r--r-- 2 boincer umatlas 409287239 Nov 21 18:04 EVNT.47493127._002075.pool.root.1
[2025-11-22 13:58:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:04 start_atlas.sh
[2025-11-22 13:58:38] drwxrwx--x 2 boincer umatlas      4096 Nov 21 18:04 shared
[2025-11-22 13:58:38] -rw-r--r-- 2 boincer umatlas    590105 Nov 21 18:04 input.tar.gz
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas         0 Nov 21 18:04 boinc_lockfile
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas      2784 Nov 21 18:04 pandaJob.out
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas        57 Nov 21 18:04 setup.sh.local
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas    989798 Nov 21 18:04 agis_schedconf.cvmfs.json
[2025-11-22 13:58:38] drwx------ 5 boincer umatlas      4096 Nov 21 18:04 pilot3
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas       533 Nov 22 13:41 boinc_task_state.xml
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas      5954 Nov 22 13:54 init_data.xml
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas 938860942 Nov 22 13:57 HITS.47533967._000465.pool.root.1
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas      1069 Nov 22 13:57 memory_monitor_summary.json
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas   1526164 Nov 22 13:57 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas   2323179 Nov 22 13:57 log.47533967._000465.job.log.tgz.1
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas      8677 Nov 22 13:57 heartbeat.json
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas        95 Nov 22 13:58 pilot_heartbeat.json
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas        29 Nov 22 13:58 wrapper_checkpoint.txt
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 13:58 boinc_mmap_file
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas      4821 Nov 22 13:58 pilotlog.txt
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas   9860297 Nov 22 13:58 log.47533967._000465.job.log.1
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas       353 Nov 22 13:58 output.list
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas       620 Nov 22 13:58 runtime_log
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas  12206080 Nov 22 13:58 result.tar.gz
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas       668 Nov 22 13:58 vrNODm6sUg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmemIKDmkl0N5n.diag
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas      9343 Nov 22 13:58 runtime_log.err
[2025-11-22 13:58:38] -rw-r--r-- 1 boincer umatlas     21217 Nov 22 13:58 stderr.txt
[2025-11-22 13:58:38] HITS file was successfully produced:
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas 938860942 Nov 22 13:57 shared/HITS.pool.root.1
[2025-11-22 13:58:38]  *** Contents of shared directory: ***
[2025-11-22 13:58:38] total 1329080
[2025-11-22 13:58:38] -rw-r--r-- 2 boincer umatlas 409287239 Nov 21 18:04 ATLAS.root_0
[2025-11-22 13:58:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 18:04 start_atlas.sh
[2025-11-22 13:58:38] -rw-r--r-- 2 boincer umatlas    590105 Nov 21 18:04 input.tar.gz
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas 938860942 Nov 22 13:57 HITS.pool.root.1
[2025-11-22 13:58:38] -rw------- 1 boincer umatlas  12206080 Nov 22 13:58 result.tar.gz
13:58:40 (24893): run_atlas exited; CPU time 557741.888191
13:58:40 (24893): called boinc_finish(0)

</stderr_txt>
]]>

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