Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:32:22 (4013723): wrapper (7.7.26015): starting
00:32:22 (4013723): wrapper: running run_atlas (--nthreads 3)
[2025-11-22 00:32:22] Arguments: --nthreads 3
[2025-11-22 00:32:22] Threads: 3
[2025-11-22 00:32:22] Checking for CVMFS
[2025-11-22 00:32:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:32:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:32:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:32:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:32:22] 2.9.2.0 3971706 8 53516 153152 3 9 34587805 36864001 0 130560 0 125215 99.986 5328 4817 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 00:32:22] CVMFS is ok
[2025-11-22 00:32:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:32:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:32:22] Further information can be found at the LHC@home message board.
[2025-11-22 00:32:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:32:22] Checking for apptainer binary...
[2025-11-22 00:32:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:32:22] Running /usr/bin/apptainer --version
[2025-11-22 00:32:22] apptainer version 1.4.1-1.1
[2025-11-22 00:32:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:32:23] thA335
[2025-11-22 00:32:23] apptainer works
[2025-11-22 00:32:23] Set ATHENA_PROC_NUMBER=3
[2025-11-22 00:32:23] Set ATHENA_CORE_NUMBER=3
[2025-11-22 00:32:23] Starting ATLAS job with PandaID=6894269229
[2025-11-22 00:32:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:36:42]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:36:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:36:42] 
[2025-11-22 00:36:42] 2025-11-21 23:35:49,577 | INFO     | ***************************************
[2025-11-22 00:36:42] 2025-11-21 23:35:50,081 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-22 00:36:42] 2025-11-21 23:35:50,094 | INFO     | sufficient remaining disk space (827042299904 B)
[2025-11-22 00:36:42] 2025-11-21 23:35:50,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:36:42] 2025-11-21 23:35:50,094 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:36:42] 2025-11-21 23:35:50,094 | INFO     | update_server=False
[2025-11-22 00:36:42] 2025-11-21 23:35:50,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:36:42] 2025-11-21 23:35:50,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:36:42] 2025-11-21 23:35:50,095 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:36:42] 2025-11-21 23:35:50,095 | INFO     | aborting loop
[2025-11-22 00:36:42] 2025-11-21 23:35:50,381 | INFO     | all job control threads have been joined
[2025-11-22 00:36:42] 2025-11-21 23:35:50,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:36:42] 2025-11-21 23:35:51,100 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:51,101 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:51,101 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:51,132 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:51,165 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:51,199 | INFO     | all data control threads have been joined
[2025-11-22 00:36:42] 2025-11-21 23:35:51,352 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:51,387 | INFO     | [job] control thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:51,516 | INFO     | all payload control threads have been joined
[2025-11-22 00:36:42] 2025-11-21 23:35:52,119 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:52,206 | INFO     | [data] control thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:52,277 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:52,356 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:52,484 | INFO     | [job] validate thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:52,519 | INFO     | [payload] control thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:52,570 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:52,867 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:35:53,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:36:42] 2025-11-21 23:35:57,182 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:36:42] 2025-11-21 23:36:20,665 | INFO     | PID=4017449 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:36:42] 2025-11-21 23:36:20,665 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:36:42] 2025-11-21 23:36:20,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:36:42] 2025-11-21 23:36:20,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:36:42] 2025-11-21 23:36:35,617 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:36:42] 2025-11-21 23:36:36,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140389534549824)>', '<ExcThread(monitor, started 140388899735296)>']
[2025-11-22 00:36:42] 2025-11-21 23:36:37,756 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:36:42] 2025-11-21 23:36:37,756 | INFO     | [monitor] control thread has ended
[2025-11-22 00:36:42] 2025-11-21 23:36:41,956 | INFO     | all workflow threads have been joined
[2025-11-22 00:36:42] 2025-11-21 23:36:41,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:36:42] 2025-11-21 23:36:41,957 | INFO     | traces error code: 0
[2025-11-22 00:36:42] 2025-11-21 23:36:41,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:36:42] 2025-11-21 23:36:42,003 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:36:42] 2025-11-21 23:36:42,006 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:36:42] 2025-11-21 23:36:42,009 [wrapper] pilotpid: 4017449
[2025-11-22 00:36:42] 2025-11-21 23:36:42,012 [wrapper] Pilot exit status: 0
[2025-11-22 00:36:42] 2025-11-21 23:36:42,019 [wrapper] pandaids: 6894269229
[2025-11-22 00:36:42] 2025-11-21 23:36:42,038 [wrapper] cleanup supervisor_pilot 4017455 4017450
[2025-11-22 00:36:42] 2025-11-21 23:36:42,041 [wrapper] Test setup, not cleaning
[2025-11-22 00:36:42] 2025-11-21 23:36:42,044 [wrapper] apfmon messages muted
[2025-11-22 00:36:42] 2025-11-21 23:36:42,047 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:36:42] 2025-11-21 23:36:42,050 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:36:42]  *** Error codes and diagnostics ***
[2025-11-22 00:36:42]     "exeErrorCode": 65,
[2025-11-22 00:36:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 00:36:42]     "pilotErrorCode": 1305,
[2025-11-22 00:36:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-22 00:36:42]  *** Listing of results directory ***
[2025-11-22 00:36:42] total 403804
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc    576529 Nov 21 07:04 pilot3.tar.gz
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc      5112 Nov 21 07:09 queuedata.json
[2025-11-22 00:36:42] -rwx------ 1 boinc boinc     36292 Nov 21 07:12 runpilot2-wrapper.sh
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc       100 Nov 22 00:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:36:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 00:32 run_atlas
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc       105 Nov 22 00:32 job.xml
[2025-11-22 00:36:42] -rw-r--r-- 2 boinc boinc 409292101 Nov 22 00:32 EVNT.47493127._002280.pool.root.1
[2025-11-22 00:36:42] -rw-r--r-- 2 boinc boinc    590107 Nov 22 00:32 input.tar.gz
[2025-11-22 00:36:42] -rw-r--r-- 2 boinc boinc     15847 Nov 22 00:32 start_atlas.sh
[2025-11-22 00:36:42] drwxrwx--x 2 boinc boinc      4096 Nov 22 00:32 shared
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc         0 Nov 22 00:32 boinc_setup_complete
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc      6194 Nov 22 00:32 init_data.xml
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc         0 Nov 22 00:32 boinc_lockfile
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc      2786 Nov 22 00:32 pandaJob.out
[2025-11-22 00:36:42] -rw------- 1 boinc boinc    989798 Nov 22 00:32 agis_schedconf.cvmfs.json
[2025-11-22 00:36:42] -rw------- 1 boinc boinc   1526164 Nov 22 00:32 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:36:42] drwx------ 5 boinc boinc      4096 Nov 22 00:32 pilot3
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc       523 Nov 22 00:33 boinc_task_state.xml
[2025-11-22 00:36:42] -rw------- 1 boinc boinc       948 Nov 22 00:33 memory_monitor_summary.json
[2025-11-22 00:36:42] -rw------- 1 boinc boinc     55811 Nov 22 00:33 log.47533967._002513.job.log.tgz.1
[2025-11-22 00:36:42] -rw------- 1 boinc boinc        95 Nov 22 00:35 pilot_heartbeat.json
[2025-11-22 00:36:42] -rw------- 1 boinc boinc      8402 Nov 22 00:35 heartbeat.json
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc      8192 Nov 22 00:36 boinc_mmap_file
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc        23 Nov 22 00:36 wrapper_checkpoint.txt
[2025-11-22 00:36:42] -rw------- 1 boinc boinc      4752 Nov 22 00:36 pilotlog.txt
[2025-11-22 00:36:42] -rw------- 1 boinc boinc     93265 Nov 22 00:36 log.47533967._002513.job.log.1
[2025-11-22 00:36:42] -rw------- 1 boinc boinc       186 Nov 22 00:36 output.list
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc       620 Nov 22 00:36 runtime_log
[2025-11-22 00:36:42] -rw------- 1 boinc boinc    174080 Nov 22 00:36 result.tar.gz
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc      8744 Nov 22 00:36 runtime_log.err
[2025-11-22 00:36:42] -rw------- 1 boinc boinc       649 Nov 22 00:36 kYVMDmOYZg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5OHKDmMBh1Qm.diag
[2025-11-22 00:36:42] -rw-r--r-- 1 boinc boinc      8411 Nov 22 00:36 stderr.txt
[2025-11-22 00:36:42] No HITS result produced
[2025-11-22 00:36:42]  *** Contents of shared directory: ***
[2025-11-22 00:36:42] total 400472
[2025-11-22 00:36:42] -rw-r--r-- 2 boinc boinc 409292101 Nov 22 00:32 ATLAS.root_0
[2025-11-22 00:36:42] -rw-r--r-- 2 boinc boinc    590107 Nov 22 00:32 input.tar.gz
[2025-11-22 00:36:42] -rw-r--r-- 2 boinc boinc     15847 Nov 22 00:32 start_atlas.sh
[2025-11-22 00:36:42] -rw------- 1 boinc boinc    174080 Nov 22 00:36 result.tar.gz
00:36:44 (4013723): run_atlas exited; CPU time 31.998475
00:36:44 (4013723): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN