Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:40:39 (14740): wrapper (7.7.26015): starting
17:40:39 (14740): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 17:40:39] Arguments: --nthreads 12
[2025-11-21 17:40:39] Threads: 12
[2025-11-21 17:40:39] Checking for CVMFS
[2025-11-21 17:40:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 17:40:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 17:40:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 17:40:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 17:40:39] 2.11.2.0 2916 281048 95156 153145 2 81 19948049 20275201 1 130560 1 126315903 99.967 16704897 14243 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 17:40:39] CVMFS is ok
[2025-11-21 17:40:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 17:40:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 17:40:39] Further information can be found at the LHC@home message board.
[2025-11-21 17:40:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:40:39] Checking for apptainer binary...
[2025-11-21 17:40:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 17:40:39] Running /usr/bin/apptainer --version
[2025-11-21 17:40:39] apptainer version 1.3.2-1.el7
[2025-11-21 17:40:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:40:40] c-205-23.aglt2.org
[2025-11-21 17:40:40] apptainer works
[2025-11-21 17:40:40] Set ATHENA_PROC_NUMBER=12
[2025-11-21 17:40:40] Set ATHENA_CORE_NUMBER=12
[2025-11-21 17:40:40] Starting ATLAS job with PandaID=6893848206
[2025-11-21 17:40:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:45:30 (10679): wrapper (7.7.26015): starting
00:45:30 (10679): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 00:45:30] Arguments: --nthreads 12
[2025-11-22 00:45:30] Threads: 12
[2025-11-22 00:45:30] This job has been restarted, cleaning up previous attempt
[2025-11-22 00:45:31] Checking for CVMFS
[2025-11-22 00:45:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:45:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:45:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:45:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:45:31] 2.11.2.0 2916 281473 96776 153161 1 50 10340332 20275200 1 130560 1 126480526 99.967 16728455 14257 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-22 00:45:31] CVMFS is ok
[2025-11-22 00:45:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:45:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:45:31] Further information can be found at the LHC@home message board.
[2025-11-22 00:45:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:45:31] Checking for apptainer binary...
[2025-11-22 00:45:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:45:31] Running /usr/bin/apptainer --version
[2025-11-22 00:45:31] apptainer version 1.3.2-1.el7
[2025-11-22 00:45:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:45:33] c-205-23.aglt2.org
[2025-11-22 00:45:33] apptainer works
[2025-11-22 00:45:33] Set ATHENA_PROC_NUMBER=12
[2025-11-22 00:45:33] Set ATHENA_CORE_NUMBER=12
[2025-11-22 00:45:33] Starting ATLAS job with PandaID=6893848206
[2025-11-22 00:45:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 07:56:36]  *** The last 200 lines of the pilot log: ***
[2025-11-22 07:56:36] 2025-11-22 12:55:36,279 | INFO     | time since job start (25788s) is within the limit (172800.0s)
[2025-11-22 07:56:36] 2025-11-22 12:55:37,353 | INFO     | monitor loop #1930: job 0:6893848206 is in state 'finished'
[2025-11-22 07:56:36] 2025-11-22 12:55:37,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 07:56:36] 2025-11-22 12:55:38,285 | INFO     | time since job start (25790s) is within the limit (172800.0s)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,447 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 07:56:36] 2025-11-22 12:55:39,450 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5
[2025-11-22 07:56:36] 2025-11-22 12:55:39,451 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893848206/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,452 | INFO     | extracted standard info from prmon json
[2025-11-22 07:56:36] 2025-11-22 12:55:39,452 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:56:36] 2025-11-22 12:55:39,452 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:56:36] 2025-11-22 12:55:39,459 | INFO     | fitting pss+swap vs Time
[2025-11-22 07:56:36] 2025-11-22 12:55:39,459 | INFO     | sum of square deviations: 23469065916.978752
[2025-11-22 07:56:36] 2025-11-22 12:55:39,463 | INFO     | sum of deviations: 365342767317.6809
[2025-11-22 07:56:36] 2025-11-22 12:55:39,463 | INFO     | mean x: 1763803248.326241
[2025-11-22 07:56:36] 2025-11-22 12:55:39,463 | INFO     | mean y: 3414876.8936170214
[2025-11-22 07:56:36] 2025-11-22 12:55:39,464 | INFO     | intersect: -27453696625.83714
[2025-11-22 07:56:36] 2025-11-22 12:55:39,464 | INFO     | chi2: 6.075128143871673
[2025-11-22 07:56:36] 2025-11-22 12:55:39,465 | INFO     | sum of square deviations: 22646664678.940147
[2025-11-22 07:56:36] 2025-11-22 12:55:39,468 | INFO     | sum of deviations: 531066752096.24365
[2025-11-22 07:56:36] 2025-11-22 12:55:39,468 | INFO     | mean x: 1763803095.8301435
[2025-11-22 07:56:36] 2025-11-22 12:55:39,469 | INFO     | mean y: 3445575.933014354
[2025-11-22 07:56:36] 2025-11-22 12:55:39,469 | INFO     | intersect: -41357929033.49803
[2025-11-22 07:56:36] 2025-11-22 12:55:39,469 | INFO     | chi2: 2.9400420596660632
[2025-11-22 07:56:36] 2025-11-22 12:55:39,469 | INFO     | current chi2=2.9400420596660632 (change=51.60526675257293 %)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,470 | INFO     | sum of square deviations: 21843705665.888573
[2025-11-22 07:56:36] 2025-11-22 12:55:39,474 | INFO     | sum of deviations: 570395744111.8401
[2025-11-22 07:56:36] 2025-11-22 12:55:39,474 | INFO     | mean x: 1763802943.3341405
[2025-11-22 07:56:36] 2025-11-22 12:55:39,474 | INFO     | mean y: 3453017.4794188864
[2025-11-22 07:56:36] 2025-11-22 12:55:39,474 | INFO     | intersect: -46054011211.25796
[2025-11-22 07:56:36] 2025-11-22 12:55:39,475 | INFO     | chi2: 2.605259190453806
[2025-11-22 07:56:36] 2025-11-22 12:55:39,475 | INFO     | current chi2=2.605259190453806 (change=11.387009519526494 %)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,475 | INFO     | right removable region: 412
[2025-11-22 07:56:36] 2025-11-22 12:55:39,475 | INFO     | sum of square deviations: 22646580498.94011
[2025-11-22 07:56:36] 2025-11-22 12:55:39,479 | INFO     | sum of deviations: 220821279120.81323
[2025-11-22 07:56:36] 2025-11-22 12:55:39,479 | INFO     | mean x: 1763803400.8301435
[2025-11-22 07:56:36] 2025-11-22 12:55:39,479 | INFO     | mean y: 3441599.110047847
[2025-11-22 07:56:36] 2025-11-22 12:55:39,480 | INFO     | intersect: -17194974872.956505
[2025-11-22 07:56:36] 2025-11-22 12:55:39,480 | INFO     | chi2: 3.6282164719474883
[2025-11-22 07:56:36] 2025-11-22 12:55:39,480 | INFO     | current chi2=3.6282164719474883 (change=40.27753183103675 %)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,481 | INFO     | sum of square deviations: 21843562803.55445
[2025-11-22 07:56:36] 2025-11-22 12:55:39,485 | INFO     | sum of deviations: 188829056642.52316
[2025-11-22 07:56:36] 2025-11-22 12:55:39,485 | INFO     | mean x: 1763803553.3317192
[2025-11-22 07:56:36] 2025-11-22 12:55:39,485 | INFO     | mean y: 3447668.7845036318
[2025-11-22 07:56:36] 2025-11-22 12:55:39,485 | INFO     | intersect: -15243944163.47478
[2025-11-22 07:56:36] 2025-11-22 12:55:39,485 | INFO     | chi2: 3.5759450974211164
[2025-11-22 07:56:36] 2025-11-22 12:55:39,486 | INFO     | current chi2=3.5759450974211164 (change=1.4406906239063126 %)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,486 | INFO     | left removable region: 20
[2025-11-22 07:56:36] 2025-11-22 12:55:39,486 | INFO     | sum of square deviations: 18678125728.221794
[2025-11-22 07:56:36] 2025-11-22 12:55:39,490 | INFO     | sum of deviations: 353540538289.7167
[2025-11-22 07:56:36] 2025-11-22 12:55:39,490 | INFO     | mean x: 1763803522.8341837
[2025-11-22 07:56:36] 2025-11-22 12:55:39,490 | INFO     | mean y: 3494928.349489796
[2025-11-22 07:56:36] 2025-11-22 12:55:39,490 | INFO     | intersect: -33381870175.917957
[2025-11-22 07:56:36] 2025-11-22 12:55:39,490 | INFO     | chi2: 0.053662796307346924
[2025-11-22 07:56:36] 2025-11-22 12:55:39,491 | INFO     | current memory leak: 18.93 B/s (using 392 data points, chi2=0.05)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,491 | INFO     | could have reported an average CPU frequency of 2419 MHz (18 samples)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,491 | INFO     | ..............................
[2025-11-22 07:56:36] 2025-11-22 12:55:39,491 | INFO     | . Timing measurements:
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | . get job = 0 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | . initial setup = 2 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | . payload setup = 7 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | . stage-in = 0 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | . payload execution = 25751 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | . stage-out = 3 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | . log creation = 0 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,492 | INFO     | ..............................
[2025-11-22 07:56:36] 2025-11-22 12:55:39,575 | INFO     | 
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | job summary report
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | --------------------------------------------------
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | PanDA job id: 6893848206
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | task id: 47523449
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | errors: (none)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | pilot state: finished 
[2025-11-22 07:56:36] 2025-11-22 12:55:39,576 | INFO     | transexitcode: 0
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | exeerrorcode: 0
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | exeerrordiag: 
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | exitcode: 0
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | exitmsg: OK
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | cpuconsumptiontime: 296239 s
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | nevents: 1000
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | neventsw: 0
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | pid: 20855
[2025-11-22 07:56:36] 2025-11-22 12:55:39,577 | INFO     | pgrp: 20855
[2025-11-22 07:56:36] 2025-11-22 12:55:39,578 | INFO     | corecount: 12
[2025-11-22 07:56:36] 2025-11-22 12:55:39,578 | INFO     | event service: False
[2025-11-22 07:56:36] 2025-11-22 12:55:39,578 | INFO     | sizes: {0: 2298636, 1: 2298835, 6: 2299097, 12: 2299125, 25762: 2336363, 25763: 2336362, 25766: 2345540, 25769: 2345596, 25776: 2345842}
[2025-11-22 07:56:36] 2025-11-22 12:55:39,578 | INFO     | --------------------------------------------------
[2025-11-22 07:56:36] 2025-11-22 12:55:39,578 | INFO     | 
[2025-11-22 07:56:36] 2025-11-22 12:55:39,578 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 07:56:36] 2025-11-22 12:55:39,653 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,653 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,653 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,653 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,653 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,656 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,656 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 07:56:36] 2025-11-22 12:55:39,656 | INFO     | job 6893848206 has completed (purged errors)
[2025-11-22 07:56:36] 2025-11-22 12:55:39,657 | INFO     | overall cleanup function is called
[2025-11-22 07:56:36] 2025-11-22 12:55:40,674 | INFO     | --- collectZombieJob: --- 10, [20855]
[2025-11-22 07:56:36] 2025-11-22 12:55:40,674 | INFO     | zombie collector waiting for pid 20855
[2025-11-22 07:56:36] 2025-11-22 12:55:40,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 07:56:36] 2025-11-22 12:55:40,675 | INFO     | collected zombie processes
[2025-11-22 07:56:36] 2025-11-22 12:55:40,675 | INFO     | will attempt to kill all subprocesses of pid=20855
[2025-11-22 07:56:36] 2025-11-22 12:55:40,767 | INFO     | process IDs to be killed: [20855] (in reverse order)
[2025-11-22 07:56:36] 2025-11-22 12:55:40,820 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 07:56:36] 2025-11-22 12:55:40,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 07:56:36] 2025-11-22 12:55:40,824 | INFO     | did not find any defunct processes belonging to 20855
[2025-11-22 07:56:36] 2025-11-22 12:55:40,827 | INFO     | did not find any defunct processes belonging to 20855
[2025-11-22 07:56:36] 2025-11-22 12:55:40,830 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 07:56:36] 2025-11-22 12:55:40,830 | INFO     | ready for new job
[2025-11-22 07:56:36] 2025-11-22 12:55:40,831 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 07:56:36] 2025-11-22 12:55:40,833 | INFO     | ***************************************
[2025-11-22 07:56:36] 2025-11-22 12:55:40,834 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 07:56:36] 2025-11-22 12:55:40,834 | INFO     | ***************************************
[2025-11-22 07:56:36] 2025-11-22 12:55:40,834 | INFO     | 
[2025-11-22 07:56:36] 2025-11-22 12:55:40,835 | INFO     | architecture information:
[2025-11-22 07:56:36] 2025-11-22 12:55:40,836 | INFO     | executing command: cat /etc/os-release
[2025-11-22 07:56:36] 2025-11-22 12:55:40,849 | INFO     | cat /etc/os-release:
[2025-11-22 07:56:36] NAME="CentOS Linux"
[2025-11-22 07:56:36] VERSION="7 (Core)"
[2025-11-22 07:56:36] ID="centos"
[2025-11-22 07:56:36] ID_LIKE="rhel fedora"
[2025-11-22 07:56:36] VERSION_ID="7"
[2025-11-22 07:56:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 07:56:36] ANSI_COLOR="0;31"
[2025-11-22 07:56:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 07:56:36] HOME_URL="https://www.centos.org/"
[2025-11-22 07:56:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 07:56:36] 
[2025-11-22 07:56:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 07:56:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 07:56:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 07:56:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 07:56:36] 
[2025-11-22 07:56:36] 2025-11-22 12:55:40,850 | INFO     | ***************************************
[2025-11-22 07:56:36] 2025-11-22 12:55:41,353 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 07:56:36] 2025-11-22 12:55:41,370 | INFO     | sufficient remaining disk space (27854372864 B)
[2025-11-22 07:56:36] 2025-11-22 12:55:41,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 07:56:36] 2025-11-22 12:55:41,370 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 07:56:36] 2025-11-22 12:55:41,370 | INFO     | update_server=False
[2025-11-22 07:56:36] 2025-11-22 12:55:41,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 07:56:36] 2025-11-22 12:55:41,371 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 07:56:36] 2025-11-22 12:55:41,371 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:56:36] 2025-11-22 12:55:41,373 | INFO     | aborting loop
[2025-11-22 07:56:36] 2025-11-22 12:55:41,374 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:56:36] 2025-11-22 12:55:41,513 | INFO     | all payload control threads have been joined
[2025-11-22 07:56:36] 2025-11-22 12:55:41,801 | INFO     | all job control threads have been joined
[2025-11-22 07:56:36] 2025-11-22 12:55:42,198 | INFO     | all data control threads have been joined
[2025-11-22 07:56:36] 2025-11-22 12:55:42,376 | INFO     | [job] retrieve thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:42,379 | INFO     | [job] job monitor thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:42,380 | INFO     | [job] queue monitor thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:42,412 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:42,518 | INFO     | [payload] control thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:42,605 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:42,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:42,804 | INFO     | [job] control thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:43,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 07:56:36] 2025-11-22 12:55:43,201 | INFO     | [data] control thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:43,218 | INFO     | [job] validate thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:43,221 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:43,374 | INFO     | [data] copytool_out thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:43,513 | INFO     | [payload] validate_post thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:43,870 | INFO     | [data] copytool_in thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:43,970 | INFO     | [payload] failed_post thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:55:47,063 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 07:56:36] 2025-11-22 12:56:11,486 | INFO     | PID=14379 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 07:56:36] 2025-11-22 12:56:11,487 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 07:56:36] 2025-11-22 12:56:11,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 07:56:36] 2025-11-22 12:56:11,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 07:56:36] 2025-11-22 12:56:29,635 | INFO     | [monitor] cgroup control has ended
[2025-11-22 07:56:36] 2025-11-22 12:56:30,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226860783424)>', '<ExcThread(monitor, started 140225976198912)>']
[2025-11-22 07:56:36] 2025-11-22 12:56:31,573 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 07:56:36] 2025-11-22 12:56:31,573 | INFO     | [monitor] control thread has ended
[2025-11-22 07:56:36] 2025-11-22 12:56:36,019 | INFO     | all workflow threads have been joined
[2025-11-22 07:56:36] 2025-11-22 12:56:36,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 07:56:36] 2025-11-22 12:56:36,020 | INFO     | traces error code: 0
[2025-11-22 07:56:36] 2025-11-22 12:56:36,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 07:56:36] 2025-11-22 12:56:36,127 [wrapper] ==== pilot stdout END ====
[2025-11-22 07:56:36] 2025-11-22 12:56:36,131 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 07:56:36] 2025-11-22 12:56:36,135 [wrapper] pilotpid: 14379
[2025-11-22 07:56:36] 2025-11-22 12:56:36,139 [wrapper] Pilot exit status: 0
[2025-11-22 07:56:36] 2025-11-22 12:56:36,154 [wrapper] pandaids: 6893848206 6893848206
[2025-11-22 07:56:36] 2025-11-22 12:56:36,201 [wrapper] cleanup supervisor_pilot 17356 14380
[2025-11-22 07:56:36] 2025-11-22 12:56:36,205 [wrapper] Test setup, not cleaning
[2025-11-22 07:56:36] 2025-11-22 12:56:36,209 [wrapper] apfmon messages muted
[2025-11-22 07:56:36] 2025-11-22 12:56:36,213 [wrapper] ==== wrapper stdout END ====
[2025-11-22 07:56:36] 2025-11-22 12:56:36,217 [wrapper] ==== wrapper stderr END ====
[2025-11-22 07:56:36]  *** Error codes and diagnostics ***
[2025-11-22 07:56:36]     "exeErrorCode": 0,
[2025-11-22 07:56:36]     "exeErrorDiag": "",
[2025-11-22 07:56:36]     "pilotErrorCode": 0,
[2025-11-22 07:56:36]     "pilotErrorDiag": "",
[2025-11-22 07:56:36]  *** Listing of results directory ***
[2025-11-22 07:56:36] total 1695280
[2025-11-22 07:56:36] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:30 queuedata.json
[2025-11-22 07:56:36] -rwx------ 1 boincer umatlas     36292 Nov 20 05:31 runpilot2-wrapper.sh
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas       100 Nov 21 17:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 07:56:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 17:40 run_atlas
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas       105 Nov 21 17:40 job.xml
[2025-11-22 07:56:36] -rw-r--r-- 3 boincer umatlas 407722975 Nov 21 17:40 EVNT.47493127._000258.pool.root.1
[2025-11-22 07:56:36] -rw-r--r-- 3 boincer umatlas 407722975 Nov 21 17:40 ATLAS.root_0
[2025-11-22 07:56:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 17:40 start_atlas.sh
[2025-11-22 07:56:36] drwxrwx--x 2 boincer umatlas      4096 Nov 21 17:40 shared
[2025-11-22 07:56:36] -rw-r--r-- 2 boincer umatlas    590104 Nov 21 17:40 input.tar.gz
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas         0 Nov 21 17:40 boinc_lockfile
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas      2786 Nov 22 00:45 pandaJob.out
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas        57 Nov 22 00:45 setup.sh.local
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas    989752 Nov 22 00:45 agis_schedconf.cvmfs.json
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas       533 Nov 22 07:45 boinc_task_state.xml
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas 905033775 Nov 22 07:54 HITS.47523449._002575.pool.root.1
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas      1074 Nov 22 07:55 memory_monitor_summary.json
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas   1526164 Nov 22 07:55 agis_ddmendpoints.agis.ALL.json
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas   2172018 Nov 22 07:55 log.47523449._002575.job.log.tgz.1
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas      8666 Nov 22 07:55 heartbeat.json
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas      5956 Nov 22 07:55 init_data.xml
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas        96 Nov 22 07:56 pilot_heartbeat.json
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 07:56 boinc_mmap_file
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas        29 Nov 22 07:56 wrapper_checkpoint.txt
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas      4746 Nov 22 07:56 pilotlog.txt
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas   3607728 Nov 22 07:56 log.47523449._002575.job.log.1
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas       353 Nov 22 07:56 output.list
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas       620 Nov 22 07:56 runtime_log
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas   5795840 Nov 22 07:56 result.tar.gz
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas       795 Nov 22 07:56 TYnNDmk7Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaUHKDmSUj5Nn.diag
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas      9430 Nov 22 07:56 runtime_log.err
[2025-11-22 07:56:36] -rw-r--r-- 1 boincer umatlas     23504 Nov 22 07:56 stderr.txt
[2025-11-22 07:56:36] HITS file was successfully produced:
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas 905033775 Nov 22 07:54 shared/HITS.pool.root.1
[2025-11-22 07:56:36]  *** Contents of shared directory: ***
[2025-11-22 07:56:36] total 1288256
[2025-11-22 07:56:36] -rw-r--r-- 3 boincer umatlas 407722975 Nov 21 17:40 ATLAS.root_0
[2025-11-22 07:56:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 17:40 start_atlas.sh
[2025-11-22 07:56:36] -rw-r--r-- 2 boincer umatlas    590104 Nov 21 17:40 input.tar.gz
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas 905033775 Nov 22 07:54 HITS.pool.root.1
[2025-11-22 07:56:36] -rw------- 1 boincer umatlas   5795840 Nov 22 07:56 result.tar.gz
07:56:38 (10679): run_atlas exited; CPU time 289606.265772
07:56:38 (10679): called boinc_finish(0)

</stderr_txt>
]]>

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