Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
22:18:53 (1549012): wrapper (7.7.26015): starting
22:18:53 (1549012): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 22:18:53] Arguments: --nthreads 12
[2025-11-25 22:18:53] Threads: 12
[2025-11-25 22:18:53] Checking for CVMFS
[2025-11-25 22:18:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:18:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:18:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:18:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:18:58] 2.13.0.0 2291514 10121 169940 153300 3 81 2416546 4096001 17897 130560 0 60749689 99.987 1023491 621 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-25 22:18:58] CVMFS is ok
[2025-11-25 22:18:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:18:58] Checking for apptainer binary...
[2025-11-25 22:18:58] apptainer is not installed, using version from CVMFS
[2025-11-25 22:18:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:19:37] epyc7v12
[2025-11-25 22:19:37] apptainer works
[2025-11-25 22:19:37] Set ATHENA_PROC_NUMBER=12
[2025-11-25 22:19:37] Set ATHENA_CORE_NUMBER=12
[2025-11-25 22:19:38] Starting ATLAS job with PandaID=6893840302
[2025-11-25 22:19:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:46:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:46:41] 2025-11-26 10:45:12,723 | INFO     | monitor loop #2715: job 0:6893840302 is in state 'finished'
[2025-11-26 10:46:41] 2025-11-26 10:45:12,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:46:41] 2025-11-26 10:45:14,483 | INFO     | time since job start (44401s) is within the limit (172800.0s)
[2025-11-26 10:46:41] 2025-11-26 10:45:15,227 | INFO     | monitor loop #2716: job 0:6893840302 is in state 'finished'
[2025-11-26 10:46:41] 2025-11-26 10:45:15,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:46:41] 2025-11-26 10:45:16,491 | INFO     | time since job start (44403s) is within the limit (172800.0s)
[2025-11-26 10:46:41] 2025-11-26 10:45:17,739 | INFO     | monitor loop #2717: job 0:6893840302 is in state 'finished'
[2025-11-26 10:46:41] 2025-11-26 10:45:17,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:46:41] 2025-11-26 10:45:18,503 | INFO     | time since job start (44405s) is within the limit (172800.0s)
[2025-11-26 10:46:41] 2025-11-26 10:45:20,251 | INFO     | monitor loop #2718: job 0:6893840302 is in state 'finished'
[2025-11-26 10:46:41] 2025-11-26 10:45:20,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:46:41] 2025-11-26 10:45:20,511 | INFO     | time since job start (44407s) is within the limit (172800.0s)
[2025-11-26 10:46:41] 2025-11-26 10:45:22,767 | INFO     | monitor loop #2719: job 0:6893840302 is in state 'finished'
[2025-11-26 10:46:41] 2025-11-26 10:45:22,767 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:46:41] 2025-11-26 10:45:23,264 | INFO     | PID=1561664 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:46:41] 2025-11-26 10:45:23,264 | INFO     | .. there are 20 such processes running
[2025-11-26 10:46:41] 2025-11-26 10:45:24,035 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 10:46:41] 2025-11-26 10:45:24,084 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2395.3379062499985
[2025-11-26 10:46:41] 2025-11-26 10:45:24,136 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/1/PanDA_Pilot-6893840302/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:46:41] 2025-11-26 10:45:24,137 | INFO     | extracted standard info from prmon json
[2025-11-26 10:46:41] 2025-11-26 10:45:24,137 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:46:41] 2025-11-26 10:45:24,137 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:46:41] 2025-11-26 10:45:24,171 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:46:41] 2025-11-26 10:45:24,172 | INFO     | sum of square deviations: 112870004292.65561
[2025-11-26 10:46:41] 2025-11-26 10:45:24,198 | INFO     | sum of deviations: 830454645941.3866
[2025-11-26 10:46:41] 2025-11-26 10:45:24,207 | INFO     | mean x: 1764132002.302521
[2025-11-26 10:46:41] 2025-11-26 10:45:24,207 | INFO     | mean y: 3135744.3963585435
[2025-11-26 10:46:41] 2025-11-26 10:45:24,207 | INFO     | intersect: -12976677861.062487
[2025-11-26 10:46:41] 2025-11-26 10:45:24,208 | INFO     | chi2: 67.7221050790477
[2025-11-26 10:46:41] 2025-11-26 10:45:24,209 | INFO     | sum of square deviations: 110515775918.79561
[2025-11-26 10:46:41] 2025-11-26 10:45:24,247 | INFO     | sum of deviations: 1105255856401.9363
[2025-11-26 10:46:41] 2025-11-26 10:45:24,248 | INFO     | mean x: 1764131849.8152328
[2025-11-26 10:46:41] 2025-11-26 10:45:24,248 | INFO     | mean y: 3153538.579689704
[2025-11-26 10:46:41] 2025-11-26 10:45:24,248 | INFO     | intersect: -17639730857.45574
[2025-11-26 10:46:41] 2025-11-26 10:45:24,249 | INFO     | chi2: 63.45960998153696
[2025-11-26 10:46:41] 2025-11-26 10:45:24,249 | INFO     | current chi2=63.45960998153696 (change=6.294097167439491 %)
[2025-11-26 10:46:41] 2025-11-26 10:45:24,249 | INFO     | right removable region: 708
[2025-11-26 10:46:41] 2025-11-26 10:45:24,250 | INFO     | sum of square deviations: 110514990848.79573
[2025-11-26 10:46:41] 2025-11-26 10:45:24,276 | INFO     | sum of deviations: 489755849551.2769
[2025-11-26 10:46:41] 2025-11-26 10:45:24,277 | INFO     | mean x: 1764132154.8152328
[2025-11-26 10:46:41] 2025-11-26 10:45:24,277 | INFO     | mean y: 3157808.566995769
[2025-11-26 10:46:41] 2025-11-26 10:45:24,277 | INFO     | intersect: -7814732195.010504
[2025-11-26 10:46:41] 2025-11-26 10:45:24,278 | INFO     | chi2: 62.13417191640099
[2025-11-26 10:46:41] 2025-11-26 10:45:24,278 | INFO     | current chi2=62.13417191640099 (change=8.251269147827388 %)
[2025-11-26 10:46:41] 2025-11-26 10:45:24,278 | INFO     | left removable region: 10
[2025-11-26 10:46:41] 2025-11-26 10:45:24,283 | INFO     | sum of square deviations: 105450656223.47926
[2025-11-26 10:46:41] 2025-11-26 10:45:24,299 | INFO     | time since job start (44411s) is within the limit (172800.0s)
[2025-11-26 10:46:41] 2025-11-26 10:45:24,308 | INFO     | sum of deviations: 496514480450.58014
[2025-11-26 10:46:41] 2025-11-26 10:45:24,309 | INFO     | mean x: 1764132124.3438396
[2025-11-26 10:46:41] 2025-11-26 10:45:24,309 | INFO     | mean y: 3201580.64756447
[2025-11-26 10:46:41] 2025-11-26 10:45:24,309 | INFO     | intersect: -8303215624.65126
[2025-11-26 10:46:41] 2025-11-26 10:45:24,310 | INFO     | chi2: 51.88433216922383
[2025-11-26 10:46:41] 2025-11-26 10:45:24,310 | INFO     | current memory leak: 4.71 B/s (using 698 data points, chi2=51.88)
[2025-11-26 10:46:41] 2025-11-26 10:45:24,311 | INFO     | could have reported an average CPU frequency of 2397 MHz (26 samples)
[2025-11-26 10:46:41] 2025-11-26 10:45:24,311 | INFO     | ..............................
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . Timing measurements:
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . get job = 0 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . initial setup = 11 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . payload setup = 224 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . stage-in = 0 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . payload execution = 43709 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . stage-out = 7 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | . log creation = 3 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,312 | INFO     | ..............................
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | 
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | job summary report
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | --------------------------------------------------
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | PanDA job id: 6893840302
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | task id: 47523449
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | errors: (none)
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:46:41] 2025-11-26 10:45:24,527 | INFO     | pilot state: finished 
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | transexitcode: 0
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | exeerrorcode: 0
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | exeerrordiag: 
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | exitcode: 0
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | exitmsg: OK
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | cpuconsumptiontime: 263565 s
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | nevents: 1000
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | neventsw: 0
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | pid: 1578146
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | pgrp: 1578146
[2025-11-26 10:46:41] 2025-11-26 10:45:24,528 | INFO     | corecount: 12
[2025-11-26 10:46:41] 2025-11-26 10:45:24,529 | INFO     | event service: False
[2025-11-26 10:46:41] 2025-11-26 10:45:24,529 | INFO     | sizes: {0: 2283487, 1: 2284195, 2: 2284394, 13: 2284394, 24: 2284450, 35: 2284478, 46: 2284634, 56: 2284662, 67: 2284690, 78: 2284718, 89: 2284774, 99: 2285082, 11
[2025-11-26 10:46:41] 2025-11-26 10:45:24,529 | INFO     | --------------------------------------------------
[2025-11-26 10:46:41] 2025-11-26 10:45:24,529 | INFO     | 
[2025-11-26 10:46:41] 2025-11-26 10:45:24,529 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/1
[2025-11-26 10:46:41] 2025-11-26 10:45:25,187 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,188 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:46:41] 2025-11-26 10:45:25,190 | INFO     | job 6893840302 has completed (purged errors)
[2025-11-26 10:46:41] 2025-11-26 10:45:25,190 | INFO     | overall cleanup function is called
[2025-11-26 10:46:41] 2025-11-26 10:45:26,235 | INFO     | --- collectZombieJob: --- 10, [1578146]
[2025-11-26 10:46:41] 2025-11-26 10:45:26,235 | INFO     | zombie collector waiting for pid 1578146
[2025-11-26 10:46:41] 2025-11-26 10:45:26,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:46:41] 2025-11-26 10:45:26,235 | INFO     | collected zombie processes
[2025-11-26 10:46:41] 2025-11-26 10:45:26,235 | INFO     | will attempt to kill all subprocesses of pid=1578146
[2025-11-26 10:46:41] 2025-11-26 10:45:27,543 | INFO     | process IDs to be killed: [1578146] (in reverse order)
[2025-11-26 10:46:41] 2025-11-26 10:45:41,134 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:46:41] 2025-11-26 10:45:41,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:46:41] 2025-11-26 10:45:41,191 | INFO     | did not find any defunct processes belonging to 1578146
[2025-11-26 10:46:41] 2025-11-26 10:45:41,210 | INFO     | did not find any defunct processes belonging to 1578146
[2025-11-26 10:46:41] 2025-11-26 10:45:41,279 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:46:41] 2025-11-26 10:45:41,279 | INFO     | ready for new job
[2025-11-26 10:46:41] 2025-11-26 10:45:41,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:46:41] 2025-11-26 10:45:41,316 | INFO     | ***************************************
[2025-11-26 10:46:41] 2025-11-26 10:45:41,317 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:46:41] 2025-11-26 10:45:41,317 | INFO     | ***************************************
[2025-11-26 10:46:41] 2025-11-26 10:45:41,317 | INFO     | 
[2025-11-26 10:46:41] 2025-11-26 10:45:41,357 | INFO     | architecture information:
[2025-11-26 10:46:41] 2025-11-26 10:45:41,387 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:46:41] 2025-11-26 10:45:41,827 | INFO     | cat /etc/os-release:
[2025-11-26 10:46:41] NAME="CentOS Linux"
[2025-11-26 10:46:41] VERSION="7 (Core)"
[2025-11-26 10:46:41] ID="centos"
[2025-11-26 10:46:41] ID_LIKE="rhel fedora"
[2025-11-26 10:46:41] VERSION_ID="7"
[2025-11-26 10:46:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:46:41] ANSI_COLOR="0;31"
[2025-11-26 10:46:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:46:41] HOME_URL="https://www.centos.org/"
[2025-11-26 10:46:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:46:41] 
[2025-11-26 10:46:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:46:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:46:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:46:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:46:41] 
[2025-11-26 10:46:41] 2025-11-26 10:45:41,828 | INFO     | ***************************************
[2025-11-26 10:46:41] 2025-11-26 10:45:42,331 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/1
[2025-11-26 10:46:41] 2025-11-26 10:45:42,899 | INFO     | sufficient remaining disk space (329526542336 B)
[2025-11-26 10:46:41] 2025-11-26 10:45:42,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:46:41] 2025-11-26 10:45:42,900 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:46:41] 2025-11-26 10:45:42,900 | INFO     | update_server=False
[2025-11-26 10:46:41] 2025-11-26 10:45:42,900 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:46:41] 2025-11-26 10:45:43,091 | INFO     | all data control threads have been joined
[2025-11-26 10:46:41] 2025-11-26 10:45:43,215 | INFO     | all job control threads have been joined
[2025-11-26 10:46:41] 2025-11-26 10:45:43,615 | INFO     | all payload control threads have been joined
[2025-11-26 10:46:41] 2025-11-26 10:45:43,903 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:46:41] 2025-11-26 10:45:43,903 | INFO     | aborting loop
[2025-11-26 10:46:41] 2025-11-26 10:45:43,903 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:43,907 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,015 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:46:41] 2025-11-26 10:45:44,099 | INFO     | [data] control thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,151 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,219 | INFO     | [job] control thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,563 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,619 | INFO     | [payload] control thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,819 | INFO     | [job] validate thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,855 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,907 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,911 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:44,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:46:41] 2025-11-26 10:45:45,271 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:45,287 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:45,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:46:41] 2025-11-26 10:45:46,027 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:46,623 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:48,959 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:46:41] 2025-11-26 10:45:58,742 | INFO     | PID=1561664 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:46:41] 2025-11-26 10:45:58,742 | INFO     | .. there are 20 such processes running
[2025-11-26 10:46:41] 2025-11-26 10:45:58,751 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:46:41] 2025-11-26 10:45:58,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:46:41] 2025-11-26 10:45:58,752 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:46:41] 2025-11-26 10:46:28,095 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:46:41] 2025-11-26 10:46:30,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140464773785408)>', '<ExcThread(monitor, started 140464330098432)>']
[2025-11-26 10:46:41] 2025-11-26 10:46:30,935 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:46:41] 2025-11-26 10:46:30,935 | INFO     | [monitor] control thread has ended
[2025-11-26 10:46:41] 2025-11-26 10:46:35,199 | INFO     | all workflow threads have been joined
[2025-11-26 10:46:41] 2025-11-26 10:46:35,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:46:41] 2025-11-26 10:46:35,199 | INFO     | traces error code: 0
[2025-11-26 10:46:41] 2025-11-26 10:46:35,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:46:41] 2025-11-26 10:46:35,598 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:46:41] 2025-11-26 10:46:35,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:46:41] 2025-11-26 10:46:35,751 [wrapper] pilotpid: 1561664
[2025-11-26 10:46:41] 2025-11-26 10:46:35,843 [wrapper] Pilot exit status: 0
[2025-11-26 10:46:41] 2025-11-26 10:46:36,427 [wrapper] pandaids: 6893840302
[2025-11-26 10:46:41] 2025-11-26 10:46:38,043 [wrapper] cleanup supervisor_pilot 3129903 1561665
[2025-11-26 10:46:41] 2025-11-26 10:46:38,109 [wrapper] Test setup, not cleaning
[2025-11-26 10:46:41] 2025-11-26 10:46:38,208 [wrapper] apfmon messages muted
[2025-11-26 10:46:41] 2025-11-26 10:46:38,319 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:46:41] 2025-11-26 10:46:38,350 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:46:41]  *** Error codes and diagnostics ***
[2025-11-26 10:46:41]     "exeErrorCode": 0,
[2025-11-26 10:46:41]     "exeErrorDiag": "",
[2025-11-26 10:46:41]     "pilotErrorCode": 0,
[2025-11-26 10:46:41]     "pilotErrorDiag": "",
[2025-11-26 10:46:41]  *** Listing of results directory ***
[2025-11-26 10:46:41] total 1318704
[2025-11-26 10:46:41] -rw-r--r-- 1 boinc boinc    576529 Nov 20 10:06 pilot3.tar.gz
[2025-11-26 10:46:41] -rwx------ 1 boinc boinc     36292 Nov 20 10:20 runpilot2-wrapper.sh
[2025-11-26 10:46:41] -rw-r--r-- 1 boinc boinc      5112 Nov 20 10:21 queuedata.json
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc       100 Nov 25 22:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:46:41] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 22:18 run_atlas
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc       105 Nov 25 22:18 job.xml
[2025-11-26 10:46:41] -rw-r--r-- 2 boinc boinc 410575391 Nov 25 22:18 EVNT.47493127._000175.pool.root.1
[2025-11-26 10:46:41] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:18 start_atlas.sh
[2025-11-26 10:46:41] drwxrwx--x 2 boinc boinc      4096 Nov 25 22:18 shared
[2025-11-26 10:46:41] -rw-r--r-- 2 boinc boinc    590101 Nov 25 22:18 input.tar.gz
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc      7041 Nov 25 22:18 init_data.xml
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc         0 Nov 25 22:18 boinc_setup_complete
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc         0 Nov 25 22:18 boinc_lockfile
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc      2786 Nov 25 22:19 pandaJob.out
[2025-11-26 10:46:41] -rw------- 1 boinc boinc    991877 Nov 25 22:25 agis_schedconf.cvmfs.json
[2025-11-26 10:46:41] drwx------ 5 boinc boinc      4096 Nov 25 22:25 pilot3
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc       533 Nov 26 09:50 boinc_task_state.xml
[2025-11-26 10:46:41] -rw------- 1 boinc boinc 919801551 Nov 26 10:41 HITS.47523449._001748.pool.root.1
[2025-11-26 10:46:41] -rw------- 1 boinc boinc      1039 Nov 26 10:42 memory_monitor_summary.json
[2025-11-26 10:46:41] -rw------- 1 boinc boinc   1516240 Nov 26 10:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:46:41] -rw------- 1 boinc boinc   2355114 Nov 26 10:42 log.47523449._001748.job.log.tgz.1
[2025-11-26 10:46:41] -rw------- 1 boinc boinc      8573 Nov 26 10:45 heartbeat.json
[2025-11-26 10:46:41] -rw------- 1 boinc boinc        95 Nov 26 10:45 pilot_heartbeat.json
[2025-11-26 10:46:41] -rw------- 1 boinc boinc      4848 Nov 26 10:46 pilotlog.txt
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc      8192 Nov 26 10:46 boinc_mmap_file
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc        29 Nov 26 10:46 wrapper_checkpoint.txt
[2025-11-26 10:46:41] -rw------- 1 boinc boinc   5674447 Nov 26 10:46 log.47523449._001748.job.log.1
[2025-11-26 10:46:41] -rw------- 1 boinc boinc       353 Nov 26 10:46 output.list
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc       620 Nov 26 10:46 runtime_log
[2025-11-26 10:46:41] -rw------- 1 boinc boinc   8048640 Nov 26 10:46 result.tar.gz
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc      9168 Nov 26 10:46 runtime_log.err
[2025-11-26 10:46:41] -rw------- 1 boinc boinc       660 Nov 26 10:46 hWeLDmswGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQNHKDmnByaQn.diag
[2025-11-26 10:46:41] -rw-rw-r-- 1 boinc boinc     21688 Nov 26 10:46 stderr.txt
[2025-11-26 10:46:41] HITS file was successfully produced:
[2025-11-26 10:46:41] -rw------- 1 boinc boinc 919801551 Nov 26 10:41 shared/HITS.pool.root.1
[2025-11-26 10:46:41]  *** Contents of shared directory: ***
[2025-11-26 10:46:41] total 1307664
[2025-11-26 10:46:41] -rw-r--r-- 2 boinc boinc 410575391 Nov 25 22:18 ATLAS.root_0
[2025-11-26 10:46:41] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:18 start_atlas.sh
[2025-11-26 10:46:41] -rw-r--r-- 2 boinc boinc    590101 Nov 25 22:18 input.tar.gz
[2025-11-26 10:46:41] -rw------- 1 boinc boinc 919801551 Nov 26 10:41 HITS.pool.root.1
[2025-11-26 10:46:41] -rw------- 1 boinc boinc   8048640 Nov 26 10:46 result.tar.gz
10:46:42 (1549012): run_atlas exited; CPU time 265154.285418
10:46:42 (1549012): called boinc_finish(0)

</stderr_txt>
]]>

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