Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:02:57 (223954): wrapper (7.7.26015): starting
23:02:57 (223954): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 23:02:57] Arguments: --nthreads 4
[2025-11-21 23:02:57] Threads: 4
[2025-11-21 23:02:57] Checking for CVMFS
[2025-11-21 23:02:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 23:02:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 23:02:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 23:02:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 23:02:57] 2.9.2.0 184594 21 59164 153145 3 90 33573626 36864001 0 130560 0 122757 99.998 2587 2781 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 23:02:57] CVMFS is ok
[2025-11-21 23:02:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 23:02:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 23:02:57] Further information can be found at the LHC@home message board.
[2025-11-21 23:02:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 23:02:57] Checking for apptainer binary...
[2025-11-21 23:02:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 23:02:57] Running /usr/bin/apptainer --version
[2025-11-21 23:02:57] apptainer version 1.4.1-1.1
[2025-11-21 23:02:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 23:02:57] cosA131
[2025-11-21 23:02:57] apptainer works
[2025-11-21 23:02:57] Set ATHENA_PROC_NUMBER=4
[2025-11-21 23:02:57] Set ATHENA_CORE_NUMBER=4
[2025-11-21 23:02:57] Starting ATLAS job with PandaID=6893877272
[2025-11-21 23:02:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:13:13]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | WARNING  | wrong length of table data, x=[1763762609.0, 1763762670.0, 1763762731.0, 1763762792.0, 1763762853.0, 1763762914.0, 1763762975.0], y=[3104.0, 836706.0, 1065300.0, 1
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | could have reported an average CPU frequency of 3596 MHz (4 samples)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | ..............................
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | . Timing measurements:
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . get job = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . initial setup = 1 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . payload setup = 4 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . stage-in = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . payload execution = 402 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . stage-out = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . log creation = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | ..............................
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893877272/pilotlog.txt
[2025-11-21 23:13:13] 2025-11-21 22:12:16,278 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 23:13:13] - Log from pilotlog.txt -
[2025-11-21 23:13:13] 2025-11-21 22:12:16,258 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 23:13:13] 2025-11-21 22:12:16,260 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3286.1633125000003
[2025-11-21 23:13:13] 2025-11-21 22:12:16,261 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893877272/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | extracted standard info from prmon json
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | WARNING  | wrong length of table data, x=[1763762609.0, 1763762670.0, 1763762731.0, 1763762792.0, 1763762853.0, 1763762914.0, 1763762975.0], y=[3104.0, 836706.0, 1065300.0, 1
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | could have reported an average CPU frequency of 3596 MHz (4 samples)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | ..............................
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | . Timing measurements:
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . get job = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . initial setup = 1 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . payload setup = 4 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . stage-in = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . payload execution = 402 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . stage-out = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . log creation = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | ..............................
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893877272/pilotlog.txt
[2025-11-21 23:13:13] 2025-11-21 22:12:16,278 | WARNING  | 
[2025-11-21 23:13:13] [begin log extracts]
[2025-11-21 23:13:13] - Log from pilotlog.txt -
[2025-11-21 23:13:13] 2025-11-21 22:12:16,258 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 23:13:13] 2025-11-21 22:12:16,260 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3286.1633125000003
[2025-11-21 23:13:13] 2025-11-21 22:12:16,261 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893877272/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | extracted standard info from prmon json
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | WARNING  | wrong length of table data, x=[1763762609.0, 1763762670.0, 1763762731.0, 1763762792.0, 1763762853.0, 1763762914.0, 1763762975.0], y=[3104.0, 836706.0, 1065300.0, 1
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | could have reported an average CPU frequency of 3596 MHz (4 samples)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | ..............................
[2025-11-21 23:13:13] 2025-11-21 22:12:16,262 | INFO     | . Timing measurements:
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . get job = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . initial setup = 1 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . payload setup = 4 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . stage-in = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . payload execution = 402 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . stage-out = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | . log creation = 0 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | ..............................
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 23:13:13] 2025-11-21 22:12:16,263 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6893877272/pilotlog.txt
[2025-11-21 23:13:13] [end log extracts]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,279 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,279 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | 
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | job summary report
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | --------------------------------------------------
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | PanDA job id: 6893877272
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | task id: 47523449
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 22:10:03,957 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | pilot state: failed 
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | transexitcode: 65
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | exeerrorcode: 65
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 144244003; Curre
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | exitcode: 65
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 1; Run: 284500; Evt: 144244003; Current al
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | cpuconsumptiontime: 90 s
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | nevents: 0
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | neventsw: 0
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | pid: 234347
[2025-11-21 23:13:13] 2025-11-21 22:12:16,319 | INFO     | pgrp: 234347
[2025-11-21 23:13:13] 2025-11-21 22:12:16,320 | INFO     | corecount: 4
[2025-11-21 23:13:13] 2025-11-21 22:12:16,320 | INFO     | event service: False
[2025-11-21 23:13:13] 2025-11-21 22:12:16,320 | INFO     | sizes: {0: 2298587, 1: 2298786, 4: 2299048, 11: 2299076, 410: 2326218, 412: 2330514, 415: 2330698, 536: 2330944}
[2025-11-21 23:13:13] 2025-11-21 22:12:16,320 | INFO     | --------------------------------------------------
[2025-11-21 23:13:13] 2025-11-21 22:12:16,320 | INFO     | 
[2025-11-21 23:13:13] 2025-11-21 22:12:16,320 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | job 6893877272 has completed (purged errors)
[2025-11-21 23:13:13] 2025-11-21 22:12:16,341 | INFO     | overall cleanup function is called
[2025-11-21 23:13:13] 2025-11-21 22:12:17,349 | INFO     | --- collectZombieJob: --- 10, [234347]
[2025-11-21 23:13:13] 2025-11-21 22:12:17,349 | INFO     | zombie collector waiting for pid 234347
[2025-11-21 23:13:13] 2025-11-21 22:12:17,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:13:13] 2025-11-21 22:12:17,349 | INFO     | collected zombie processes
[2025-11-21 23:13:13] 2025-11-21 22:12:17,349 | INFO     | will attempt to kill all subprocesses of pid=234347
[2025-11-21 23:13:13] 2025-11-21 22:12:17,403 | INFO     | process IDs to be killed: [234347] (in reverse order)
[2025-11-21 23:13:13] 2025-11-21 22:12:17,441 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:13:13] 2025-11-21 22:12:17,441 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:13:13] 2025-11-21 22:12:17,444 | INFO     | did not find any defunct processes belonging to 234347
[2025-11-21 23:13:13] 2025-11-21 22:12:17,445 | INFO     | did not find any defunct processes belonging to 234347
[2025-11-21 23:13:13] 2025-11-21 22:12:17,446 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:13:13] 2025-11-21 22:12:17,446 | INFO     | ready for new job
[2025-11-21 23:13:13] 2025-11-21 22:12:17,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:13:13] 2025-11-21 22:12:17,447 | INFO     | ***************************************
[2025-11-21 23:13:13] 2025-11-21 22:12:17,447 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:13:13] 2025-11-21 22:12:17,447 | INFO     | ***************************************
[2025-11-21 23:13:13] 2025-11-21 22:12:17,447 | INFO     | 
[2025-11-21 23:13:13] 2025-11-21 22:12:17,447 | INFO     | architecture information:
[2025-11-21 23:13:13] 2025-11-21 22:12:17,448 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:13:13] 2025-11-21 22:12:17,463 | INFO     | cat /etc/os-release:
[2025-11-21 23:13:13] NAME="CentOS Linux"
[2025-11-21 23:13:13] VERSION="7 (Core)"
[2025-11-21 23:13:13] ID="centos"
[2025-11-21 23:13:13] ID_LIKE="rhel fedora"
[2025-11-21 23:13:13] VERSION_ID="7"
[2025-11-21 23:13:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:13:13] ANSI_COLOR="0;31"
[2025-11-21 23:13:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:13:13] HOME_URL="https://www.centos.org/"
[2025-11-21 23:13:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:13:13] 
[2025-11-21 23:13:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:13:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:13:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:13:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:13:13] 
[2025-11-21 23:13:13] 2025-11-21 22:12:17,463 | INFO     | ***************************************
[2025-11-21 23:13:13] 2025-11-21 22:12:17,966 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 23:13:13] 2025-11-21 22:12:17,986 | INFO     | sufficient remaining disk space (326898810880 B)
[2025-11-21 23:13:13] 2025-11-21 22:12:17,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:13:13] 2025-11-21 22:12:17,986 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:13:13] 2025-11-21 22:12:17,986 | INFO     | update_server=False
[2025-11-21 23:13:13] 2025-11-21 22:12:17,986 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:13:13] 2025-11-21 22:12:17,986 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:13:13] 2025-11-21 22:12:18,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:13:13] 2025-11-21 22:12:18,178 | INFO     | all data control threads have been joined
[2025-11-21 23:13:13] 2025-11-21 22:12:18,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:13:13] 2025-11-21 22:12:18,480 | INFO     | aborting loop
[2025-11-21 23:13:13] 2025-11-21 22:12:18,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:13:13] 2025-11-21 22:12:18,700 | INFO     | all payload control threads have been joined
[2025-11-21 23:13:13] 2025-11-21 22:12:18,992 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:18,992 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,150 | INFO     | all job control threads have been joined
[2025-11-21 23:13:13] 2025-11-21 22:12:19,183 | INFO     | [data] control thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,222 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,479 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,485 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,519 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,637 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,705 | INFO     | [payload] control thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:19,924 | INFO     | [job] validate thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:20,044 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:20,107 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:20,132 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:20,144 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:20,156 | INFO     | [job] control thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:22,704 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:13:13] 2025-11-21 22:12:48,575 | INFO     | PID=227763 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 23:13:13] 2025-11-21 22:12:48,575 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:13:13] 2025-11-21 22:12:48,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:13:13] 2025-11-21 22:12:48,575 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:13:13] 2025-11-21 22:13:05,932 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:13:13] 2025-11-21 22:13:07,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140193943148352)>', '<ExcThread(monitor, started 140192564377344)>']
[2025-11-21 23:13:13] 2025-11-21 22:13:08,680 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:13:13] 2025-11-21 22:13:08,680 | INFO     | [monitor] control thread has ended
[2025-11-21 23:13:13] 2025-11-21 22:13:12,850 | INFO     | all workflow threads have been joined
[2025-11-21 23:13:13] 2025-11-21 22:13:12,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:13:13] 2025-11-21 22:13:12,850 | INFO     | traces error code: 0
[2025-11-21 23:13:13] 2025-11-21 22:13:12,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:13:13] 2025-11-21 22:13:12,931 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:13:13] 2025-11-21 22:13:12,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:13:13] 2025-11-21 22:13:12,939 [wrapper] pilotpid: 227763
[2025-11-21 23:13:13] 2025-11-21 22:13:12,943 [wrapper] Pilot exit status: 0
[2025-11-21 23:13:13] 2025-11-21 22:13:12,954 [wrapper] pandaids: 6893877272
[2025-11-21 23:13:13] 2025-11-21 22:13:12,980 [wrapper] cleanup supervisor_pilot  227769 227764
[2025-11-21 23:13:13] 2025-11-21 22:13:12,984 [wrapper] Test setup, not cleaning
[2025-11-21 23:13:13] 2025-11-21 22:13:12,989 [wrapper] apfmon messages muted
[2025-11-21 23:13:13] 2025-11-21 22:13:12,993 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:13:13] 2025-11-21 22:13:12,996 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:13:13]  *** Error codes and diagnostics ***
[2025-11-21 23:13:13]     "exeErrorCode": 65,
[2025-11-21 23:13:13]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 144244003; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-21 23:13:13]     "pilotErrorCode": 1305,
[2025-11-21 23:13:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 1; Run: 284500; Evt: 144244003; Current algorit",
[2025-11-21 23:13:13]  *** Listing of results directory ***
[2025-11-21 23:13:13] total 406224
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc    576529 Nov 20 19:04 pilot3.tar.gz
[2025-11-21 23:13:13] -rwx------ 1 boinc boinc     36292 Nov 20 19:31 runpilot2-wrapper.sh
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc      5112 Nov 20 19:31 queuedata.json
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc       100 Nov 21 23:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:13:13] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 23:02 run_atlas
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc       105 Nov 21 23:02 job.xml
[2025-11-21 23:13:13] -rw-r--r-- 2 boinc boinc 410990043 Nov 21 23:02 EVNT.47493127._000796.pool.root.1
[2025-11-21 23:13:13] drwxrwx--x 2 boinc boinc      4096 Nov 21 23:02 shared
[2025-11-21 23:13:13] -rw-r--r-- 2 boinc boinc    590102 Nov 21 23:02 input.tar.gz
[2025-11-21 23:13:13] -rw-r--r-- 2 boinc boinc     15847 Nov 21 23:02 start_atlas.sh
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc         0 Nov 21 23:02 boinc_setup_complete
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc      6379 Nov 21 23:02 init_data.xml
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc         0 Nov 21 23:02 boinc_lockfile
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc      2784 Nov 21 23:02 pandaJob.out
[2025-11-21 23:13:13] -rw------- 1 boinc boinc    989798 Nov 21 23:03 agis_schedconf.cvmfs.json
[2025-11-21 23:13:13] -rw------- 1 boinc boinc   1526164 Nov 21 23:03 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:13:13] drwx------ 5 boinc boinc      4096 Nov 21 23:03 pilot3
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc       526 Nov 21 23:09 boinc_task_state.xml
[2025-11-21 23:13:13] -rw------- 1 boinc boinc       999 Nov 21 23:10 memory_monitor_summary.json
[2025-11-21 23:13:13] -rw------- 1 boinc boinc    389246 Nov 21 23:10 log.47523449._007955.job.log.tgz.1
[2025-11-21 23:13:13] -rw------- 1 boinc boinc        95 Nov 21 23:12 pilot_heartbeat.json
[2025-11-21 23:13:13] -rw------- 1 boinc boinc     10860 Nov 21 23:12 heartbeat.json
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc      8192 Nov 21 23:13 boinc_mmap_file
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc        23 Nov 21 23:13 wrapper_checkpoint.txt
[2025-11-21 23:13:13] -rw------- 1 boinc boinc      4751 Nov 21 23:13 pilotlog.txt
[2025-11-21 23:13:13] -rw------- 1 boinc boinc    139517 Nov 21 23:13 log.47523449._007955.job.log.1
[2025-11-21 23:13:13] -rw------- 1 boinc boinc       186 Nov 21 23:13 output.list
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc       620 Nov 21 23:13 runtime_log
[2025-11-21 23:13:13] -rw------- 1 boinc boinc    552960 Nov 21 23:13 result.tar.gz
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc      8749 Nov 21 23:13 runtime_log.err
[2025-11-21 23:13:13] -rw------- 1 boinc boinc       651 Nov 21 23:13 9pnLDmscOg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyOIKDmpIhYHn.diag
[2025-11-21 23:13:13] -rw-r--r-- 1 boinc boinc     22733 Nov 21 23:13 stderr.txt
[2025-11-21 23:13:13] No HITS result produced
[2025-11-21 23:13:13]  *** Contents of shared directory: ***
[2025-11-21 23:13:13] total 402500
[2025-11-21 23:13:13] -rw-r--r-- 2 boinc boinc 410990043 Nov 21 23:02 ATLAS.root_0
[2025-11-21 23:13:13] -rw-r--r-- 2 boinc boinc    590102 Nov 21 23:02 input.tar.gz
[2025-11-21 23:13:13] -rw-r--r-- 2 boinc boinc     15847 Nov 21 23:02 start_atlas.sh
[2025-11-21 23:13:13] -rw------- 1 boinc boinc    552960 Nov 21 23:13 result.tar.gz
23:13:14 (223954): run_atlas exited; CPU time 81.770456
23:13:14 (223954): called boinc_finish(0)

</stderr_txt>
]]>

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