Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:57:52 (937): wrapper (7.7.26015): starting
14:57:52 (937): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:57:52] Arguments: --nthreads 8
[2025-11-24 14:57:52] Threads: 8
[2025-11-24 14:57:52] Checking for CVMFS
[2025-11-24 14:57:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:57:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:57:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:57:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:57:56] 2.11.2.0 3140 282440 136792 153247 3 87 17494385 25165825 1027 130560 19 161925133 99.906 81116017 3108 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 14:57:56] CVMFS is ok
[2025-11-24 14:57:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:57:56] Checking for apptainer binary...
[2025-11-24 14:57:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:57:56] Running /usr/bin/apptainer --version
[2025-11-24 14:57:56] apptainer version 1.3.2-1.el7
[2025-11-24 14:57:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:58:17] cg-vwn243.simple-grid.lan
[2025-11-24 14:58:17] apptainer works
[2025-11-24 14:58:17] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:58:17] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:58:17] Starting ATLAS job with PandaID=6894267601
[2025-11-24 14:58:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:07:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:07:28] 2025-11-25 14:06:09,020 | INFO     | time since job start (86602s) is within the limit (172800.0s)
[2025-11-25 15:07:28] 2025-11-25 14:06:10,907 | INFO     | monitor loop #5850: job 0:6894267601 is in state 'finished'
[2025-11-25 15:07:28] 2025-11-25 14:06:10,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:07:28] 2025-11-25 14:06:11,038 | INFO     | time since job start (86604s) is within the limit (172800.0s)
[2025-11-25 15:07:28] 2025-11-25 14:06:13,045 | INFO     | time since job start (86606s) is within the limit (172800.0s)
[2025-11-25 15:07:28] 2025-11-25 14:06:13,416 | INFO     | monitor loop #5851: job 0:6894267601 is in state 'finished'
[2025-11-25 15:07:28] 2025-11-25 14:06:13,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:07:28] 2025-11-25 14:06:15,062 | INFO     | time since job start (86608s) is within the limit (172800.0s)
[2025-11-25 15:07:28] 2025-11-25 14:06:15,924 | INFO     | monitor loop #5852: job 0:6894267601 is in state 'finished'
[2025-11-25 15:07:28] 2025-11-25 14:06:15,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:07:28] 2025-11-25 14:06:17,069 | INFO     | time since job start (86610s) is within the limit (172800.0s)
[2025-11-25 15:07:28] 2025-11-25 14:06:18,432 | INFO     | monitor loop #5853: job 0:6894267601 is in state 'finished'
[2025-11-25 15:07:28] 2025-11-25 14:06:18,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:07:28] 2025-11-25 14:06:19,077 | INFO     | time since job start (86612s) is within the limit (172800.0s)
[2025-11-25 15:07:28] 2025-11-25 14:06:19,782 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 15:07:28] 2025-11-25 14:06:19,784 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 15:07:28] 2025-11-25 14:06:19,785 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6894267601/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:07:28] 2025-11-25 14:06:19,786 | INFO     | extracted standard info from prmon json
[2025-11-25 15:07:28] 2025-11-25 14:06:19,786 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:07:28] 2025-11-25 14:06:19,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:07:28] 2025-11-25 14:06:19,813 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:07:28] 2025-11-25 14:06:19,816 | INFO     | sum of square deviations: 869235083658.3224
[2025-11-25 15:07:28] 2025-11-25 14:06:19,874 | INFO     | sum of deviations: 4220320673136.2915
[2025-11-25 15:07:28] 2025-11-25 14:06:19,874 | INFO     | mean x: 1764036492.651064
[2025-11-25 15:07:28] 2025-11-25 14:06:19,874 | INFO     | mean y: 2812848.5432624114
[2025-11-25 15:07:28] 2025-11-25 14:06:19,874 | INFO     | intersect: -8561958429.175334
[2025-11-25 15:07:28] 2025-11-25 14:06:19,876 | INFO     | chi2: 31.842964225385362
[2025-11-25 15:07:28] 2025-11-25 14:06:19,879 | INFO     | sum of square deviations: 860021182644.176
[2025-11-25 15:07:28] 2025-11-25 14:06:19,938 | INFO     | sum of deviations: 4677109926996.754
[2025-11-25 15:07:28] 2025-11-25 14:06:19,938 | INFO     | mean x: 1764036340.1551602
[2025-11-25 15:07:28] 2025-11-25 14:06:19,938 | INFO     | mean y: 2820407.1708185053
[2025-11-25 15:07:28] 2025-11-25 14:06:19,938 | INFO     | intersect: -9590654782.30752
[2025-11-25 15:07:28] 2025-11-25 14:06:19,940 | INFO     | chi2: 28.702085789168432
[2025-11-25 15:07:28] 2025-11-25 14:06:19,940 | INFO     | current chi2=28.702085789168432 (change=9.863649671512071 %)
[2025-11-25 15:07:28] 2025-11-25 14:06:19,940 | INFO     | right removable region: 1404
[2025-11-25 15:07:28] 2025-11-25 14:06:19,943 | INFO     | sum of square deviations: 860020192614.1748
[2025-11-25 15:07:28] 2025-11-25 14:06:20,016 | INFO     | sum of deviations: 3623861717152.55
[2025-11-25 15:07:28] 2025-11-25 14:06:20,017 | INFO     | mean x: 1764036645.1551602
[2025-11-25 15:07:28] 2025-11-25 14:06:20,017 | INFO     | mean y: 2822719.4882562277
[2025-11-25 15:07:28] 2025-11-25 14:06:20,017 | INFO     | intersect: -7430287480.634548
[2025-11-25 15:07:28] 2025-11-25 14:06:20,018 | INFO     | chi2: 26.79710560746702
[2025-11-25 15:07:28] 2025-11-25 14:06:20,019 | INFO     | current chi2=26.79710560746702 (change=15.846070680491984 %)
[2025-11-25 15:07:28] 2025-11-25 14:06:20,019 | INFO     | left removable region: 10
[2025-11-25 15:07:28] 2025-11-25 14:06:20,021 | INFO     | sum of square deviations: 839978325124.8816
[2025-11-25 15:07:28] 2025-11-25 14:06:20,072 | INFO     | sum of deviations: 3615660548605.278
[2025-11-25 15:07:28] 2025-11-25 14:06:20,073 | INFO     | mean x: 1764036614.6642754
[2025-11-25 15:07:28] 2025-11-25 14:06:20,073 | INFO     | mean y: 2841266.3830703013
[2025-11-25 15:07:28] 2025-11-25 14:06:20,073 | INFO     | intersect: -7590399419.903181
[2025-11-25 15:07:28] 2025-11-25 14:06:20,075 | INFO     | chi2: 18.654436126728964
[2025-11-25 15:07:28] 2025-11-25 14:06:20,075 | INFO     | current memory leak: 4.30 B/s (using 1394 data points, chi2=18.65)
[2025-11-25 15:07:28] 2025-11-25 14:06:20,077 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | ..............................
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . Timing measurements:
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . get job = 0 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . initial setup = 10 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . payload setup = 167 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . stage-in = 0 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . payload execution = 86122 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . stage-out = 5 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | . log creation = 2 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,078 | INFO     | ..............................
[2025-11-25 15:07:28] 2025-11-25 14:06:20,215 | INFO     | 
[2025-11-25 15:07:28] 2025-11-25 14:06:20,215 | INFO     | job summary report
[2025-11-25 15:07:28] 2025-11-25 14:06:20,215 | INFO     | --------------------------------------------------
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | PanDA job id: 6894267601
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | task id: 47533967
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | errors: (none)
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | pilot state: finished 
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | transexitcode: 0
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | exeerrorcode: 0
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | exeerrordiag: 
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | exitcode: 0
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | exitmsg: OK
[2025-11-25 15:07:28] 2025-11-25 14:06:20,216 | INFO     | cpuconsumptiontime: 331183 s
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | nevents: 1000
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | neventsw: 0
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | pid: 11224
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | pgrp: 11224
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | corecount: 8
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | event service: False
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | sizes: {0: 2283425, 1: 2284110, 2: 2284309, 13: 2284309, 23: 2284365, 34: 2284393, 45: 2284549, 56: 2284577, 66: 2284605, 77: 2284633, 88: 2284689, 98: 2284997, 10
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | --------------------------------------------------
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | 
[2025-11-25 15:07:28] 2025-11-25 14:06:20,217 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:07:28] 2025-11-25 14:06:20,646 | INFO     | job 6894267601 has completed (purged errors)
[2025-11-25 15:07:28] 2025-11-25 14:06:20,646 | INFO     | overall cleanup function is called
[2025-11-25 15:07:28] 2025-11-25 14:06:21,669 | INFO     | --- collectZombieJob: --- 10, [11224]
[2025-11-25 15:07:28] 2025-11-25 14:06:21,669 | INFO     | zombie collector waiting for pid 11224
[2025-11-25 15:07:28] 2025-11-25 14:06:21,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:07:28] 2025-11-25 14:06:21,670 | INFO     | collected zombie processes
[2025-11-25 15:07:28] 2025-11-25 14:06:21,670 | INFO     | will attempt to kill all subprocesses of pid=11224
[2025-11-25 15:07:28] 2025-11-25 14:06:21,799 | INFO     | process IDs to be killed: [11224] (in reverse order)
[2025-11-25 15:07:28] 2025-11-25 14:06:22,399 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:07:28] 2025-11-25 14:06:22,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:07:28] 2025-11-25 14:06:22,402 | INFO     | did not find any defunct processes belonging to 11224
[2025-11-25 15:07:28] 2025-11-25 14:06:22,406 | INFO     | did not find any defunct processes belonging to 11224
[2025-11-25 15:07:28] 2025-11-25 14:06:22,460 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:07:28] 2025-11-25 14:06:22,461 | INFO     | ready for new job
[2025-11-25 15:07:28] 2025-11-25 14:06:22,461 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:07:28] 2025-11-25 14:06:22,467 | INFO     | ***************************************
[2025-11-25 15:07:28] 2025-11-25 14:06:22,467 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:07:28] 2025-11-25 14:06:22,468 | INFO     | ***************************************
[2025-11-25 15:07:28] 2025-11-25 14:06:22,468 | INFO     | 
[2025-11-25 15:07:28] 2025-11-25 14:06:22,468 | INFO     | pilot is running in a VM
[2025-11-25 15:07:28] 2025-11-25 14:06:22,469 | INFO     | architecture information:
[2025-11-25 15:07:28] 2025-11-25 14:06:22,476 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:07:28] 2025-11-25 14:06:22,624 | INFO     | cat /etc/os-release:
[2025-11-25 15:07:28] NAME="CentOS Linux"
[2025-11-25 15:07:28] VERSION="7 (Core)"
[2025-11-25 15:07:28] ID="centos"
[2025-11-25 15:07:28] ID_LIKE="rhel fedora"
[2025-11-25 15:07:28] VERSION_ID="7"
[2025-11-25 15:07:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:07:28] ANSI_COLOR="0;31"
[2025-11-25 15:07:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:07:28] HOME_URL="https://www.centos.org/"
[2025-11-25 15:07:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:07:28] 
[2025-11-25 15:07:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:07:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:07:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:07:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:07:28] 
[2025-11-25 15:07:28] 2025-11-25 14:06:22,631 | INFO     | ***************************************
[2025-11-25 15:07:28] 2025-11-25 14:06:23,135 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-25 15:07:28] 2025-11-25 14:06:23,393 | INFO     | sufficient remaining disk space (495472082944 B)
[2025-11-25 15:07:28] 2025-11-25 14:06:23,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:07:28] 2025-11-25 14:06:23,393 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:07:28] 2025-11-25 14:06:23,393 | INFO     | update_server=False
[2025-11-25 15:07:28] 2025-11-25 14:06:23,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:07:28] 2025-11-25 14:06:23,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:07:28] 2025-11-25 14:06:23,455 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 15:07:28] 2025-11-25 14:06:23,455 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 15:07:28] 2025-11-25 14:06:23,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:07:28] 2025-11-25 14:06:23,456 | INFO     | will abort loop
[2025-11-25 15:07:28] 2025-11-25 14:06:23,791 | INFO     | all job control threads have been joined
[2025-11-25 15:07:28] 2025-11-25 14:06:23,881 | INFO     | all payload control threads have been joined
[2025-11-25 15:07:28] 2025-11-25 14:06:24,127 | INFO     | all data control threads have been joined
[2025-11-25 15:07:28] 2025-11-25 14:06:24,398 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:24,463 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:24,556 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:24,595 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:24,797 | INFO     | [job] control thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:24,812 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:24,886 | INFO     | [payload] control thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,133 | INFO     | [data] control thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,135 | INFO     | [job] validate thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:07:28] 2025-11-25 14:06:25,401 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,498 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,609 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,612 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,863 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:25,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:07:28] 2025-11-25 14:06:26,238 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:29,966 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:07:28] 2025-11-25 14:06:52,303 | INFO     | PID=4757 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 15:07:28] 2025-11-25 14:06:52,304 | INFO     | .. there are 9 such processes running
[2025-11-25 15:07:28] 2025-11-25 14:06:52,306 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:07:28] 2025-11-25 14:06:52,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:07:28] 2025-11-25 14:06:52,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:07:28] 2025-11-25 14:07:17,891 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:07:28] 2025-11-25 14:07:18,714 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809660622656)>', '<ExcThread(monitor, started 139809062364928)>']
[2025-11-25 15:07:28] 2025-11-25 14:07:19,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:07:28] 2025-11-25 14:07:19,467 | INFO     | [monitor] control thread has ended
[2025-11-25 15:07:28] 2025-11-25 14:07:23,740 | INFO     | all workflow threads have been joined
[2025-11-25 15:07:28] 2025-11-25 14:07:23,740 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:07:28] 2025-11-25 14:07:23,741 | INFO     | traces error code: 0
[2025-11-25 15:07:28] 2025-11-25 14:07:23,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:07:28] 2025-11-25 14:07:24,231 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:07:28] 2025-11-25 14:07:24,291 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:07:28] 2025-11-25 14:07:24,328 [wrapper] pilotpid: 4757
[2025-11-25 15:07:28] 2025-11-25 14:07:24,362 [wrapper] Pilot exit status: 0
[2025-11-25 15:07:28] 2025-11-25 14:07:24,701 [wrapper] pandaids: 6894267601
[2025-11-25 15:07:28] 2025-11-25 14:07:25,770 [wrapper] cleanup supervisor_pilot 30872 4758
[2025-11-25 15:07:28] 2025-11-25 14:07:25,828 [wrapper] Test setup, not cleaning
[2025-11-25 15:07:28] 2025-11-25 14:07:25,932 [wrapper] apfmon messages muted
[2025-11-25 15:07:28] 2025-11-25 14:07:26,024 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:07:28] 2025-11-25 14:07:26,070 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:07:28]  *** Error codes and diagnostics ***
[2025-11-25 15:07:28]     "exeErrorCode": 0,
[2025-11-25 15:07:28]     "exeErrorDiag": "",
[2025-11-25 15:07:28]     "pilotErrorCode": 0,
[2025-11-25 15:07:28]     "pilotErrorDiag": "",
[2025-11-25 15:07:28]  *** Listing of results directory ***
[2025-11-25 15:07:28] total 1316156
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc      5112 Nov 21 06:18 queuedata.json
[2025-11-25 15:07:28] -rwx------. 1 boinc boinc     36292 Nov 21 06:19 runpilot2-wrapper.sh
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc       100 Nov 24 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:07:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 14:57 run_atlas
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc       105 Nov 24 14:57 job.xml
[2025-11-25 15:07:28] -rw-r--r--. 2 boinc boinc 409961609 Nov 24 14:57 EVNT.47493127._002241.pool.root.1
[2025-11-25 15:07:28] -rw-r--r--. 2 boinc boinc    590106 Nov 24 14:57 input.tar.gz
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc      6391 Nov 24 14:57 init_data.xml
[2025-11-25 15:07:28] -rw-r--r--. 2 boinc boinc     15847 Nov 24 14:57 start_atlas.sh
[2025-11-25 15:07:28] drwxrwx--x. 2 boinc boinc        68 Nov 24 14:57 shared
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc         0 Nov 24 14:57 boinc_lockfile
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc      2782 Nov 24 14:58 pandaJob.out
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc    988280 Nov 24 15:02 agis_schedconf.cvmfs.json
[2025-11-25 15:07:28] drwx------. 5 boinc boinc      4096 Nov 24 15:02 pilot3
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc       533 Nov 25 14:41 boinc_task_state.xml
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc 905692629 Nov 25 15:03 HITS.47533967._002121.pool.root.1
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc      1032 Nov 25 15:04 memory_monitor_summary.json
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc   1516240 Nov 25 15:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc   2503891 Nov 25 15:04 log.47533967._002121.job.log.tgz.1
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc      7941 Nov 25 15:06 heartbeat.json
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc        95 Nov 25 15:06 pilot_heartbeat.json
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc      5069 Nov 25 15:07 pilotlog.txt
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc      8192 Nov 25 15:07 boinc_mmap_file
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc        29 Nov 25 15:07 wrapper_checkpoint.txt
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc  11592090 Nov 25 15:07 log.47533967._002121.job.log.1
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc       353 Nov 25 15:07 output.list
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc       620 Nov 25 15:07 runtime_log
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc  14110720 Nov 25 15:07 result.tar.gz
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc       662 Nov 25 15:07 SmuNDmNjYg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeMHKDmSkGxJo.diag
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc      8817 Nov 25 15:07 runtime_log.err
[2025-11-25 15:07:28] -rw-r--r--. 1 boinc boinc     21406 Nov 25 15:07 stderr.txt
[2025-11-25 15:07:28] HITS file was successfully produced:
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc 905692629 Nov 25 15:03 shared/HITS.pool.root.1
[2025-11-25 15:07:28]  *** Contents of shared directory: ***
[2025-11-25 15:07:28] total 1299200
[2025-11-25 15:07:28] -rw-r--r--. 2 boinc boinc 409961609 Nov 24 14:57 ATLAS.root_0
[2025-11-25 15:07:28] -rw-r--r--. 2 boinc boinc    590106 Nov 24 14:57 input.tar.gz
[2025-11-25 15:07:28] -rw-r--r--. 2 boinc boinc     15847 Nov 24 14:57 start_atlas.sh
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc 905692629 Nov 25 15:03 HITS.pool.root.1
[2025-11-25 15:07:28] -rw-------. 1 boinc boinc  14110720 Nov 25 15:07 result.tar.gz
15:07:29 (937): run_atlas exited; CPU time 331555.457204
15:07:29 (937): called boinc_finish(0)

</stderr_txt>
]]>

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