Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:31:53 (1266425): wrapper (7.7.26015): starting
17:31:53 (1266425): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 17:31:53] Arguments: --nthreads 8
[2025-11-21 17:31:53] Threads: 8
[2025-11-21 17:31:53] Checking for CVMFS
[2025-11-21 17:31:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 17:31:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 17:31:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 17:31:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 17:31:54] 2.13.2.0 7367 29238 244144 153145 0 350 24045371 40960001 19711 16776704 0 104882053 99.707 65239434 37127 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 17:31:54] CVMFS is ok
[2025-11-21 17:31:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 17:31:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 17:31:54] Further information can be found at the LHC@home message board.
[2025-11-21 17:31:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:31:54] Checking for apptainer binary...
[2025-11-21 17:31:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 17:31:54] Running /usr/bin/apptainer --version
[2025-11-21 17:31:54] apptainer version 1.4.4-1.el9
[2025-11-21 17:31:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:31:55] c-212-16.aglt2.org
[2025-11-21 17:31:55] apptainer works
[2025-11-21 17:31:55] Set ATHENA_PROC_NUMBER=8
[2025-11-21 17:31:55] Set ATHENA_CORE_NUMBER=8
[2025-11-21 17:31:55] Starting ATLAS job with PandaID=6893850449
[2025-11-21 17:31:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:26:36]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:26:36] 2025-11-22 17:25:40,990 | INFO     | time since job start (67992s) is within the limit (172800.0s)
[2025-11-22 12:26:36] 2025-11-22 17:25:41,330 | INFO     | monitor loop #4059: job 0:6893850449 is in state 'finished'
[2025-11-22 12:26:36] 2025-11-22 17:25:41,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 12:26:36] 2025-11-22 17:25:43,000 | INFO     | time since job start (67995s) is within the limit (172800.0s)
[2025-11-22 12:26:36] 2025-11-22 17:25:43,845 | INFO     | monitor loop #4060: job 0:6893850449 is in state 'finished'
[2025-11-22 12:26:36] 2025-11-22 17:25:43,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 12:26:36] 2025-11-22 17:25:45,019 | INFO     | time since job start (67997s) is within the limit (172800.0s)
[2025-11-22 12:26:36] 2025-11-22 17:25:46,374 | INFO     | monitor loop #4061: job 0:6893850449 is in state 'finished'
[2025-11-22 12:26:36] 2025-11-22 17:25:46,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 12:26:36] 2025-11-22 17:25:48,300 | INFO     | PID=1270894 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 12:26:36] 2025-11-22 17:25:48,300 | INFO     | .. there are 23 such processes running
[2025-11-22 12:26:36] 2025-11-22 17:25:48,889 | INFO     | monitor loop #4062: job 0:6893850449 is in state 'finished'
[2025-11-22 12:26:36] 2025-11-22 17:25:48,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 12:26:36] 2025-11-22 17:25:49,303 | INFO     | time since job start (68001s) is within the limit (172800.0s)
[2025-11-22 12:26:36] 2025-11-22 17:25:51,336 | INFO     | time since job start (68003s) is within the limit (172800.0s)
[2025-11-22 12:26:36] 2025-11-22 17:25:51,394 | INFO     | monitor loop #4063: job 0:6893850449 is in state 'finished'
[2025-11-22 12:26:36] 2025-11-22 17:25:51,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,179 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 12:26:36] 2025-11-22 17:25:52,194 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3159.9841354166656
[2025-11-22 12:26:36] 2025-11-22 17:25:52,209 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893850449/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,211 | INFO     | extracted standard info from prmon json
[2025-11-22 12:26:36] 2025-11-22 17:25:52,212 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:26:36] 2025-11-22 17:25:52,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:26:36] 2025-11-22 17:25:52,247 | INFO     | fitting pss+swap vs Time
[2025-11-22 12:26:36] 2025-11-22 17:25:52,248 | INFO     | sum of square deviations: 428667547137.42584
[2025-11-22 12:26:36] 2025-11-22 17:25:52,279 | INFO     | sum of deviations: -724683505776.2646
[2025-11-22 12:26:36] 2025-11-22 17:25:52,279 | INFO     | mean x: 1763798367.7055655
[2025-11-22 12:26:36] 2025-11-22 17:25:52,279 | INFO     | mean y: 2904265.4138240577
[2025-11-22 12:26:36] 2025-11-22 17:25:52,279 | INFO     | intersect: 2984691884.110202
[2025-11-22 12:26:36] 2025-11-22 17:25:52,280 | INFO     | chi2: 34.16017445887071
[2025-11-22 12:26:36] 2025-11-22 17:25:52,282 | INFO     | sum of square deviations: 422921644352.62616
[2025-11-22 12:26:36] 2025-11-22 17:25:52,317 | INFO     | sum of deviations: -320974417301.2185
[2025-11-22 12:26:36] 2025-11-22 17:25:52,317 | INFO     | mean x: 1763798215.211001
[2025-11-22 12:26:36] 2025-11-22 17:25:52,317 | INFO     | mean y: 2914977.2146077547
[2025-11-22 12:26:36] 2025-11-22 17:25:52,317 | INFO     | intersect: 1341541438.9339457
[2025-11-22 12:26:36] 2025-11-22 17:25:52,326 | INFO     | chi2: 30.132867621139745
[2025-11-22 12:26:36] 2025-11-22 17:25:52,327 | INFO     | current chi2=30.132867621139745 (change=11.789479712932664 %)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,327 | INFO     | right removable region: 1108
[2025-11-22 12:26:36] 2025-11-22 17:25:52,328 | INFO     | sum of square deviations: 422920825122.6263
[2025-11-22 12:26:36] 2025-11-22 17:25:52,395 | INFO     | sum of deviations: -1164416152505.1248
[2025-11-22 12:26:36] 2025-11-22 17:25:52,395 | INFO     | mean x: 1763798520.211001
[2025-11-22 12:26:36] 2025-11-22 17:25:52,395 | INFO     | mean y: 2915932.633002705
[2025-11-22 12:26:36] 2025-11-22 17:25:52,395 | INFO     | intersect: 4859133372.629783
[2025-11-22 12:26:36] 2025-11-22 17:25:52,396 | INFO     | chi2: 30.425730469237422
[2025-11-22 12:26:36] 2025-11-22 17:25:52,396 | INFO     | current chi2=30.425730469237422 (change=10.932157252679168 %)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,396 | INFO     | left removable region: 10
[2025-11-22 12:26:36] 2025-11-22 17:25:52,397 | INFO     | sum of square deviations: 410460463965.16266
[2025-11-22 12:26:36] 2025-11-22 17:25:52,443 | INFO     | sum of deviations: -814215498710.5969
[2025-11-22 12:26:36] 2025-11-22 17:25:52,443 | INFO     | mean x: 1763798489.7204008
[2025-11-22 12:26:36] 2025-11-22 17:25:52,443 | INFO     | mean y: 2932185.8970856103
[2025-11-22 12:26:36] 2025-11-22 17:25:52,443 | INFO     | intersect: 3501715121.187492
[2025-11-22 12:26:36] 2025-11-22 17:25:52,444 | INFO     | chi2: 25.300290686172794
[2025-11-22 12:26:36] 2025-11-22 17:25:52,444 | INFO     | current memory leak: -1.98 B/s (using 1098 data points, chi2=25.30)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,445 | INFO     | could have reported an average CPU frequency of 3282 MHz (41 samples)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,446 | INFO     | ..............................
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . Timing measurements:
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . get job = 0 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . initial setup = 3 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . payload setup = 19 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . stage-in = 0 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . payload execution = 67906 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . stage-out = 10 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | . log creation = 1 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,450 | INFO     | ..............................
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | 
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | job summary report
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | --------------------------------------------------
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | PanDA job id: 6893850449
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | task id: 47523449
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | errors: (none)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | pilot state: finished 
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | transexitcode: 0
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | exeerrorcode: 0
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | exeerrordiag: 
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | exitcode: 0
[2025-11-22 12:26:36] 2025-11-22 17:25:52,680 | INFO     | exitmsg: OK
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | cpuconsumptiontime: 189234 s
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | nevents: 1000
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | neventsw: 0
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | pid: 1278804
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | pgrp: 1278804
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | corecount: 8
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | event service: False
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | sizes: {0: 2298635, 1: 2298834, 12: 2298834, 13: 2299124, 23: 2299180, 67928: 2355365, 67929: 2355492, 67940: 2364542, 67944: 2364598, 67965: 2364940}
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | --------------------------------------------------
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | 
[2025-11-22 12:26:36] 2025-11-22 17:25:52,681 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 12:26:36] 2025-11-22 17:25:52,892 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,895 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,895 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,895 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,895 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,895 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,895 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,896 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,898 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,898 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 12:26:36] 2025-11-22 17:25:52,898 | INFO     | job 6893850449 has completed (purged errors)
[2025-11-22 12:26:36] 2025-11-22 17:25:52,898 | INFO     | overall cleanup function is called
[2025-11-22 12:26:36] 2025-11-22 17:25:53,920 | INFO     | --- collectZombieJob: --- 10, [1278804]
[2025-11-22 12:26:36] 2025-11-22 17:25:53,921 | INFO     | zombie collector waiting for pid 1278804
[2025-11-22 12:26:36] 2025-11-22 17:25:53,921 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 12:26:36] 2025-11-22 17:25:53,921 | INFO     | collected zombie processes
[2025-11-22 12:26:36] 2025-11-22 17:25:53,921 | INFO     | will attempt to kill all subprocesses of pid=1278804
[2025-11-22 12:26:36] 2025-11-22 17:25:54,957 | INFO     | process IDs to be killed: [1278804] (in reverse order)
[2025-11-22 12:26:36] 2025-11-22 17:25:55,149 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 12:26:36] 2025-11-22 17:25:55,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 12:26:36] 2025-11-22 17:25:55,173 | INFO     | did not find any defunct processes belonging to 1278804
[2025-11-22 12:26:36] 2025-11-22 17:25:55,198 | INFO     | did not find any defunct processes belonging to 1278804
[2025-11-22 12:26:36] 2025-11-22 17:25:55,199 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 12:26:36] 2025-11-22 17:25:55,199 | INFO     | ready for new job
[2025-11-22 12:26:36] 2025-11-22 17:25:55,199 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 12:26:36] 2025-11-22 17:25:55,217 | INFO     | ***************************************
[2025-11-22 12:26:36] 2025-11-22 17:25:55,217 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 12:26:36] 2025-11-22 17:25:55,217 | INFO     | ***************************************
[2025-11-22 12:26:36] 2025-11-22 17:25:55,217 | INFO     | 
[2025-11-22 12:26:36] 2025-11-22 17:25:55,230 | INFO     | architecture information:
[2025-11-22 12:26:36] 2025-11-22 17:25:55,243 | INFO     | executing command: cat /etc/os-release
[2025-11-22 12:26:36] 2025-11-22 17:25:55,316 | INFO     | cat /etc/os-release:
[2025-11-22 12:26:36] NAME="CentOS Linux"
[2025-11-22 12:26:36] VERSION="7 (Core)"
[2025-11-22 12:26:36] ID="centos"
[2025-11-22 12:26:36] ID_LIKE="rhel fedora"
[2025-11-22 12:26:36] VERSION_ID="7"
[2025-11-22 12:26:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 12:26:36] ANSI_COLOR="0;31"
[2025-11-22 12:26:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 12:26:36] HOME_URL="https://www.centos.org/"
[2025-11-22 12:26:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 12:26:36] 
[2025-11-22 12:26:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 12:26:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 12:26:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 12:26:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 12:26:36] 
[2025-11-22 12:26:36] 2025-11-22 17:25:55,316 | INFO     | ***************************************
[2025-11-22 12:26:36] 2025-11-22 17:25:55,822 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 12:26:36] 2025-11-22 17:25:55,914 | INFO     | sufficient remaining disk space (119387717632 B)
[2025-11-22 12:26:36] 2025-11-22 17:25:55,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 12:26:36] 2025-11-22 17:25:55,915 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 12:26:36] 2025-11-22 17:25:55,915 | INFO     | update_server=False
[2025-11-22 12:26:36] 2025-11-22 17:25:55,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 12:26:36] 2025-11-22 17:25:55,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:26:36] 2025-11-22 17:25:55,924 | INFO     | aborting loop
[2025-11-22 12:26:36] 2025-11-22 17:25:55,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 12:26:36] 2025-11-22 17:25:55,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 12:26:36] 2025-11-22 17:25:56,609 | INFO     | all data control threads have been joined
[2025-11-22 12:26:36] 2025-11-22 17:25:56,688 | INFO     | all payload control threads have been joined
[2025-11-22 12:26:36] 2025-11-22 17:25:56,858 | INFO     | all job control threads have been joined
[2025-11-22 12:26:36] 2025-11-22 17:25:56,929 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:56,934 | INFO     | [job] retrieve thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:56,953 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:56,988 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,171 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,189 | INFO     | [payload] validate_post thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,657 | INFO     | [data] control thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,694 | INFO     | [payload] control thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,756 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,756 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:26:36] 2025-11-22 17:25:57,866 | INFO     | [job] control thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:57,962 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:58,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:58,184 | INFO     | [job] validate thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:58,792 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:25:59,959 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:26:36] 2025-11-22 17:26:27,307 | INFO     | PID=1270894 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 12:26:36] 2025-11-22 17:26:27,307 | INFO     | .. there are 23 such processes running
[2025-11-22 12:26:36] 2025-11-22 17:26:27,308 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:26:36] 2025-11-22 17:26:27,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:26:36] 2025-11-22 17:26:27,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:26:36] 2025-11-22 17:26:29,550 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:26:36] 2025-11-22 17:26:30,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139842046981952)>', '<ExcThread(monitor, started 139841685665536)>']
[2025-11-22 12:26:36] 2025-11-22 17:26:30,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:26:36] 2025-11-22 17:26:30,330 | INFO     | [monitor] control thread has ended
[2025-11-22 12:26:36] 2025-11-22 17:26:35,316 | INFO     | all workflow threads have been joined
[2025-11-22 12:26:36] 2025-11-22 17:26:35,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:26:36] 2025-11-22 17:26:35,317 | INFO     | traces error code: 0
[2025-11-22 12:26:36] 2025-11-22 17:26:35,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:26:36] 2025-11-22 17:26:35,664 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:26:36] 2025-11-22 17:26:35,669 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:26:36] 2025-11-22 17:26:35,674 [wrapper] pilotpid: 1270894
[2025-11-22 12:26:36] 2025-11-22 17:26:35,678 [wrapper] Pilot exit status: 0
[2025-11-22 12:26:36] 2025-11-22 17:26:35,718 [wrapper] pandaids: 6893850449
[2025-11-22 12:26:36] 2025-11-22 17:26:35,873 [wrapper] cleanup supervisor_pilot 2945654 1270895
[2025-11-22 12:26:36] 2025-11-22 17:26:35,883 [wrapper] Test setup, not cleaning
[2025-11-22 12:26:36] 2025-11-22 17:26:35,890 [wrapper] apfmon messages muted
[2025-11-22 12:26:36] 2025-11-22 17:26:35,899 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:26:36] 2025-11-22 17:26:35,906 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:26:36]  *** Error codes and diagnostics ***
[2025-11-22 12:26:36]     "exeErrorCode": 0,
[2025-11-22 12:26:36]     "exeErrorDiag": "",
[2025-11-22 12:26:36]     "pilotErrorCode": 0,
[2025-11-22 12:26:36]     "pilotErrorDiag": "",
[2025-11-22 12:26:36]  *** Listing of results directory ***
[2025-11-22 12:26:36] total 1311564
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-22 12:26:36] -rwx------. 1 boincer umatlas     36292 Nov 20 06:26 runpilot2-wrapper.sh
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:26 queuedata.json
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas       100 Nov 21 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:26:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 17:31 run_atlas
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas       105 Nov 21 17:31 job.xml
[2025-11-22 12:26:36] -rw-r--r--. 2 boincer umatlas 408258178 Nov 21 17:31 EVNT.47493127._000336.pool.root.1
[2025-11-22 12:26:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 17:31 start_atlas.sh
[2025-11-22 12:26:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 17:31 shared
[2025-11-22 12:26:36] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 17:31 input.tar.gz
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas         0 Nov 21 17:31 boinc_lockfile
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 17:31 pandaJob.out
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas        57 Nov 21 17:31 setup.sh.local
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas    989798 Nov 21 17:32 agis_schedconf.cvmfs.json
[2025-11-22 12:26:36] drwx------. 5 boincer umatlas      4096 Nov 21 17:32 pilot3
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas       533 Nov 22 11:36 boinc_task_state.xml
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas      6949 Nov 22 12:18 init_data.xml
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas 909406710 Nov 22 12:23 HITS.47523449._003353.pool.root.1
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas      1064 Nov 22 12:25 memory_monitor_summary.json
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas   1526164 Nov 22 12:25 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas   2209700 Nov 22 12:25 log.47523449._003353.job.log.tgz.1
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas      8619 Nov 22 12:25 heartbeat.json
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas        95 Nov 22 12:26 pilot_heartbeat.json
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 12:26 boinc_mmap_file
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas        29 Nov 22 12:26 wrapper_checkpoint.txt
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas      4825 Nov 22 12:26 pilotlog.txt
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas   8513875 Nov 22 12:26 log.47523449._003353.job.log.1
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas       353 Nov 22 12:26 output.list
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas       620 Nov 22 12:26 runtime_log
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas  10741760 Nov 22 12:26 result.tar.gz
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 12:26 runtime_log.err
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas       665 Nov 22 12:26 k8TKDmsyHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLdHKDmyhz5Xm.diag
[2025-11-22 12:26:36] -rw-r--r--. 1 boincer umatlas     21890 Nov 22 12:26 stderr.txt
[2025-11-22 12:26:36] HITS file was successfully produced:
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas 909406710 Nov 22 12:23 shared/HITS.pool.root.1
[2025-11-22 12:26:36]  *** Contents of shared directory: ***
[2025-11-22 12:26:36] total 1297884
[2025-11-22 12:26:36] -rw-r--r--. 2 boincer umatlas 408258178 Nov 21 17:31 ATLAS.root_0
[2025-11-22 12:26:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 17:31 start_atlas.sh
[2025-11-22 12:26:36] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 17:31 input.tar.gz
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas 909406710 Nov 22 12:23 HITS.pool.root.1
[2025-11-22 12:26:36] -rw-------. 1 boincer umatlas  10741760 Nov 22 12:26 result.tar.gz
12:26:37 (1266425): run_atlas exited; CPU time 190604.884620
12:26:37 (1266425): called boinc_finish(0)

</stderr_txt>
]]>

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