Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:09:28 (5825): wrapper (7.7.26015): starting
17:09:28 (5825): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 17:09:28] Arguments: --nthreads 8
[2025-11-21 17:09:28] Threads: 8
[2025-11-21 17:09:28] Checking for CVMFS
[2025-11-21 17:09:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 17:09:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 17:09:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 17:09:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 17:09:28] 2.11.2.0 6491 2328 66496 153145 1 81 10910246 18432001 1885 130560 0 2013094 99.992 83079 7484 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 17:09:28] CVMFS is ok
[2025-11-21 17:09:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 17:09:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 17:09:28] Further information can be found at the LHC@home message board.
[2025-11-21 17:09:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:09:28] Checking for apptainer binary...
[2025-11-21 17:09:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 17:09:28] Running /usr/bin/apptainer --version
[2025-11-21 17:09:28] apptainer version 1.3.2-1.el7
[2025-11-21 17:09:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:09:29] c-206-29.aglt2.org
[2025-11-21 17:09:29] apptainer works
[2025-11-21 17:09:29] Set ATHENA_PROC_NUMBER=8
[2025-11-21 17:09:29] Set ATHENA_CORE_NUMBER=8
[2025-11-21 17:09:29] Starting ATLAS job with PandaID=6893874345
[2025-11-21 17:09:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 12:52:50]  *** The last 200 lines of the pilot log: ***
[2025-11-22 12:52:50] 2025-11-22 17:52:16,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 12:52:50] 2025-11-22 17:52:17,252 | INFO     | time since job start (70957s) is within the limit (172800.0s)
[2025-11-22 12:52:50] 2025-11-22 17:52:17,873 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 12:52:50] 2025-11-22 17:52:17,881 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2538.9166666666665
[2025-11-22 12:52:50] 2025-11-22 17:52:17,886 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893874345/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 12:52:50] 2025-11-22 17:52:17,887 | INFO     | extracted standard info from prmon json
[2025-11-22 12:52:50] 2025-11-22 17:52:17,887 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 12:52:50] 2025-11-22 17:52:17,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 12:52:50] 2025-11-22 17:52:17,919 | INFO     | fitting pss+swap vs Time
[2025-11-22 12:52:50] 2025-11-22 17:52:17,921 | INFO     | sum of square deviations: 487773163969.1947
[2025-11-22 12:52:50] 2025-11-22 17:52:17,967 | INFO     | sum of deviations: 1943121901634.6
[2025-11-22 12:52:50] 2025-11-22 17:52:17,968 | INFO     | mean x: 1763798448.6156492
[2025-11-22 12:52:50] 2025-11-22 17:52:17,968 | INFO     | mean y: 2859618.0438521067
[2025-11-22 12:52:50] 2025-11-22 17:52:17,968 | INFO     | intersect: -7023511754.430111
[2025-11-22 12:52:50] 2025-11-22 17:52:17,970 | INFO     | chi2: 6.933166641456508
[2025-11-22 12:52:50] 2025-11-22 17:52:17,972 | INFO     | sum of square deviations: 481509255594.7921
[2025-11-22 12:52:50] 2025-11-22 17:52:18,017 | INFO     | sum of deviations: 2301164917084.8345
[2025-11-22 12:52:50] 2025-11-22 17:52:18,017 | INFO     | mean x: 1763798296.1183074
[2025-11-22 12:52:50] 2025-11-22 17:52:18,018 | INFO     | mean y: 2868330.366148532
[2025-11-22 12:52:50] 2025-11-22 17:52:18,018 | INFO     | intersect: -8426441620.961308
[2025-11-22 12:52:50] 2025-11-22 17:52:18,019 | INFO     | chi2: 4.113103283719587
[2025-11-22 12:52:50] 2025-11-22 17:52:18,020 | INFO     | current chi2=4.113103283719587 (change=40.6749686481571 %)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,021 | INFO     | sum of square deviations: 475299208695.3727
[2025-11-22 12:52:50] 2025-11-22 17:52:18,066 | INFO     | sum of deviations: 2500047558220.008
[2025-11-22 12:52:50] 2025-11-22 17:52:18,067 | INFO     | mean x: 1763798143.6209886
[2025-11-22 12:52:50] 2025-11-22 17:52:18,067 | INFO     | mean y: 2873214.272333044
[2025-11-22 12:52:50] 2025-11-22 17:52:18,067 | INFO     | intersect: -9274607499.941961
[2025-11-22 12:52:50] 2025-11-22 17:52:18,069 | INFO     | chi2: 3.1810465949550237
[2025-11-22 12:52:50] 2025-11-22 17:52:18,069 | INFO     | current chi2=3.1810465949550237 (change=22.660668222308292 %)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,069 | INFO     | right removable region: 1152
[2025-11-22 12:52:50] 2025-11-22 17:52:18,071 | INFO     | sum of square deviations: 481508818834.79236
[2025-11-22 12:52:50] 2025-11-22 17:52:18,119 | INFO     | sum of deviations: 1646005722745.1682
[2025-11-22 12:52:50] 2025-11-22 17:52:18,119 | INFO     | mean x: 1763798601.1183074
[2025-11-22 12:52:50] 2025-11-22 17:52:18,119 | INFO     | mean y: 2866843.006044905
[2025-11-22 12:52:50] 2025-11-22 17:52:18,119 | INFO     | intersect: -6026560817.812695
[2025-11-22 12:52:50] 2025-11-22 17:52:18,121 | INFO     | chi2: 4.936717804206462
[2025-11-22 12:52:50] 2025-11-22 17:52:18,121 | INFO     | current chi2=4.936717804206462 (change=28.79562745993129 %)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,123 | INFO     | sum of square deviations: 475298546846.0896
[2025-11-22 12:52:50] 2025-11-22 17:52:18,170 | INFO     | sum of deviations: 1572330739124.0977
[2025-11-22 12:52:50] 2025-11-22 17:52:18,170 | INFO     | mean x: 1763798753.6183867
[2025-11-22 12:52:50] 2025-11-22 17:52:18,170 | INFO     | mean y: 2868651.81613183
[2025-11-22 12:52:50] 2025-11-22 17:52:18,170 | INFO     | intersect: -5831937737.442613
[2025-11-22 12:52:50] 2025-11-22 17:52:18,172 | INFO     | chi2: 4.885289443667796
[2025-11-22 12:52:50] 2025-11-22 17:52:18,172 | INFO     | current chi2=4.885289443667796 (change=1.041752082625528 %)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,172 | INFO     | left removable region: 20
[2025-11-22 12:52:50] 2025-11-22 17:52:18,174 | INFO     | sum of square deviations: 449798813219.4373
[2025-11-22 12:52:50] 2025-11-22 17:52:18,218 | INFO     | sum of deviations: 2067603465770.9814
[2025-11-22 12:52:50] 2025-11-22 17:52:18,218 | INFO     | mean x: 1763798723.1245582
[2025-11-22 12:52:50] 2025-11-22 17:52:18,219 | INFO     | mean y: 2885974.7093639574
[2025-11-22 12:52:50] 2025-11-22 17:52:18,219 | INFO     | intersect: -8104819616.491552
[2025-11-22 12:52:50] 2025-11-22 17:52:18,220 | INFO     | chi2: 0.9127488353635544
[2025-11-22 12:52:50] 2025-11-22 17:52:18,221 | INFO     | current memory leak: 4.60 B/s (using 1132 data points, chi2=0.91)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,222 | INFO     | could have reported an average CPU frequency of 2635 MHz (42 samples)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,222 | INFO     | ..............................
[2025-11-22 12:52:50] 2025-11-22 17:52:18,222 | INFO     | . Timing measurements:
[2025-11-22 12:52:50] 2025-11-22 17:52:18,223 | INFO     | . get job = 0 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,223 | INFO     | . initial setup = 2 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,223 | INFO     | . payload setup = 5 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,223 | INFO     | . stage-in = 0 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,223 | INFO     | . payload execution = 70919 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,223 | INFO     | . stage-out = 4 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,223 | INFO     | . log creation = 0 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,224 | INFO     | ..............................
[2025-11-22 12:52:50] 2025-11-22 17:52:18,375 | INFO     | 
[2025-11-22 12:52:50] 2025-11-22 17:52:18,375 | INFO     | job summary report
[2025-11-22 12:52:50] 2025-11-22 17:52:18,375 | INFO     | --------------------------------------------------
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | PanDA job id: 6893874345
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | task id: 47523449
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | errors: (none)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | pilot state: finished 
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | transexitcode: 0
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | exeerrorcode: 0
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | exeerrordiag: 
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | exitcode: 0
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | exitmsg: OK
[2025-11-22 12:52:50] 2025-11-22 17:52:18,376 | INFO     | cpuconsumptiontime: 542531 s
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | nevents: 1000
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | neventsw: 0
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | pid: 15939
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | pgrp: 15939
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | corecount: 8
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | event service: False
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | sizes: {0: 2298635, 1: 2298834, 5: 2299096, 12: 2299152, 70928: 2355950, 70933: 2364944, 70936: 2365128, 70942: 2365374}
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | --------------------------------------------------
[2025-11-22 12:52:50] 2025-11-22 17:52:18,377 | INFO     | 
[2025-11-22 12:52:50] 2025-11-22 17:52:18,378 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 12:52:50] 2025-11-22 17:52:18,395 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 12:52:50] 2025-11-22 17:52:18,398 | INFO     | job 6893874345 has completed (purged errors)
[2025-11-22 12:52:50] 2025-11-22 17:52:18,399 | INFO     | overall cleanup function is called
[2025-11-22 12:52:50] 2025-11-22 17:52:19,410 | INFO     | --- collectZombieJob: --- 10, [15939]
[2025-11-22 12:52:50] 2025-11-22 17:52:19,411 | INFO     | zombie collector waiting for pid 15939
[2025-11-22 12:52:50] 2025-11-22 17:52:19,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 12:52:50] 2025-11-22 17:52:19,411 | INFO     | collected zombie processes
[2025-11-22 12:52:50] 2025-11-22 17:52:19,411 | INFO     | will attempt to kill all subprocesses of pid=15939
[2025-11-22 12:52:50] 2025-11-22 17:52:19,585 | INFO     | process IDs to be killed: [15939] (in reverse order)
[2025-11-22 12:52:50] 2025-11-22 17:52:19,650 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 12:52:50] 2025-11-22 17:52:19,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 12:52:50] 2025-11-22 17:52:19,656 | INFO     | did not find any defunct processes belonging to 15939
[2025-11-22 12:52:50] 2025-11-22 17:52:19,661 | INFO     | did not find any defunct processes belonging to 15939
[2025-11-22 12:52:50] 2025-11-22 17:52:19,663 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 12:52:50] 2025-11-22 17:52:19,663 | INFO     | ready for new job
[2025-11-22 12:52:50] 2025-11-22 17:52:19,663 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 12:52:50] 2025-11-22 17:52:19,669 | INFO     | ***************************************
[2025-11-22 12:52:50] 2025-11-22 17:52:19,669 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 12:52:50] 2025-11-22 17:52:19,669 | INFO     | ***************************************
[2025-11-22 12:52:50] 2025-11-22 17:52:19,669 | INFO     | 
[2025-11-22 12:52:50] 2025-11-22 17:52:19,671 | INFO     | architecture information:
[2025-11-22 12:52:50] 2025-11-22 17:52:19,671 | INFO     | executing command: cat /etc/os-release
[2025-11-22 12:52:50] 2025-11-22 17:52:19,686 | INFO     | cat /etc/os-release:
[2025-11-22 12:52:50] NAME="CentOS Linux"
[2025-11-22 12:52:50] VERSION="7 (Core)"
[2025-11-22 12:52:50] ID="centos"
[2025-11-22 12:52:50] ID_LIKE="rhel fedora"
[2025-11-22 12:52:50] VERSION_ID="7"
[2025-11-22 12:52:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 12:52:50] ANSI_COLOR="0;31"
[2025-11-22 12:52:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 12:52:50] HOME_URL="https://www.centos.org/"
[2025-11-22 12:52:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 12:52:50] 
[2025-11-22 12:52:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 12:52:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 12:52:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 12:52:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 12:52:50] 
[2025-11-22 12:52:50] 2025-11-22 17:52:19,687 | INFO     | ***************************************
[2025-11-22 12:52:50] 2025-11-22 17:52:20,190 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 12:52:50] 2025-11-22 17:52:20,204 | INFO     | sufficient remaining disk space (24605884416 B)
[2025-11-22 12:52:50] 2025-11-22 17:52:20,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 12:52:50] 2025-11-22 17:52:20,204 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 12:52:50] 2025-11-22 17:52:20,204 | INFO     | update_server=False
[2025-11-22 12:52:50] 2025-11-22 17:52:20,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 12:52:50] 2025-11-22 17:52:20,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:52:50] 2025-11-22 17:52:20,205 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 12:52:50] 2025-11-22 17:52:20,206 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 12:52:50] 2025-11-22 17:52:20,207 | INFO     | aborting loop
[2025-11-22 12:52:50] 2025-11-22 17:52:21,117 | INFO     | all data control threads have been joined
[2025-11-22 12:52:50] 2025-11-22 17:52:21,210 | INFO     | [job] retrieve thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:21,211 | INFO     | [job] queue monitor thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:21,212 | INFO     | [job] job monitor thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:21,341 | INFO     | [payload] validate_post thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:21,463 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:21,582 | INFO     | [payload] failed_post thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:21,628 | INFO     | all payload control threads have been joined
[2025-11-22 12:52:50] 2025-11-22 17:52:21,847 | INFO     | all job control threads have been joined
[2025-11-22 12:52:50] 2025-11-22 17:52:22,125 | INFO     | [data] control thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,211 | INFO     | [data] copytool_out thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,283 | INFO     | [job] validate thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,427 | INFO     | [data] copytool_in thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,431 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,434 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,603 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,634 | INFO     | [payload] control thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:22,672 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 12:52:50] 2025-11-22 17:52:22,853 | INFO     | [job] control thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:26,679 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 12:52:50] 2025-11-22 17:52:38,015 | INFO     | [monitor] cgroup control has ended
[2025-11-22 12:52:50] 2025-11-22 17:52:39,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154467960640)>', '<ExcThread(monitor, started 140153867708160)>']
[2025-11-22 12:52:50] 2025-11-22 17:52:44,535 | INFO     | all workflow threads have been joined
[2025-11-22 12:52:50] 2025-11-22 17:52:44,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 12:52:50] 2025-11-22 17:52:44,535 | INFO     | traces error code: 0
[2025-11-22 12:52:50] 2025-11-22 17:52:44,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 12:52:50] 2025-11-22 17:52:50,523 | INFO     | PID=9559 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 12:52:50] 2025-11-22 17:52:50,524 | INFO     | .. there are 3 such processes running
[2025-11-22 12:52:50] 2025-11-22 17:52:50,524 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 12:52:50] 2025-11-22 17:52:50,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 12:52:50] 2025-11-22 17:52:50,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 12:52:50] 2025-11-22 17:52:50,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 12:52:50] 2025-11-22 17:52:50,525 | CRITICAL | thread 'MainThread' is not alive
[2025-11-22 12:52:50] 2025-11-22 17:52:50,525 | INFO     | [monitor] control thread has ended
[2025-11-22 12:52:50] 2025-11-22 17:52:50,653 [wrapper] ==== pilot stdout END ====
[2025-11-22 12:52:50] 2025-11-22 17:52:50,655 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 12:52:50] 2025-11-22 17:52:50,658 [wrapper] pilotpid: 9559
[2025-11-22 12:52:50] 2025-11-22 17:52:50,660 [wrapper] Pilot exit status: 0
[2025-11-22 12:52:50] 2025-11-22 17:52:50,669 [wrapper] pandaids: 6893874345
[2025-11-22 12:52:50] 2025-11-22 17:52:50,697 [wrapper] cleanup supervisor_pilot   532 9560
[2025-11-22 12:52:50] 2025-11-22 17:52:50,700 [wrapper] Test setup, not cleaning
[2025-11-22 12:52:50] 2025-11-22 17:52:50,708 [wrapper] apfmon messages muted
[2025-11-22 12:52:50] 2025-11-22 17:52:50,711 [wrapper] ==== wrapper stdout END ====
[2025-11-22 12:52:50] 2025-11-22 17:52:50,713 [wrapper] ==== wrapper stderr END ====
[2025-11-22 12:52:50]  *** Error codes and diagnostics ***
[2025-11-22 12:52:50]     "exeErrorCode": 0,
[2025-11-22 12:52:50]     "exeErrorDiag": "",
[2025-11-22 12:52:50]     "pilotErrorCode": 0,
[2025-11-22 12:52:50]     "pilotErrorDiag": "",
[2025-11-22 12:52:50]  *** Listing of results directory ***
[2025-11-22 12:52:50] total 1313476
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 11:00 pilot3.tar.gz
[2025-11-22 12:52:50] -rwx------ 1 boincer umatlas     36292 Nov 20 11:04 runpilot2-wrapper.sh
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 11:04 queuedata.json
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas       100 Nov 21 17:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 12:52:50] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 17:09 run_atlas
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas       105 Nov 21 17:09 job.xml
[2025-11-22 12:52:50] -rw-r--r-- 2 boincer umatlas 408865033 Nov 21 17:09 EVNT.47493127._000714.pool.root.1
[2025-11-22 12:52:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 17:09 start_atlas.sh
[2025-11-22 12:52:50] drwxrwx--x 2 boincer umatlas      4096 Nov 21 17:09 shared
[2025-11-22 12:52:50] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 17:09 input.tar.gz
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas         0 Nov 21 17:09 boinc_lockfile
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas      2785 Nov 21 17:09 pandaJob.out
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas        57 Nov 21 17:09 setup.sh.local
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas    989798 Nov 21 17:09 agis_schedconf.cvmfs.json
[2025-11-22 12:52:50] drwx------ 5 boincer umatlas      4096 Nov 21 17:09 pilot3
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas       533 Nov 22 12:33 boinc_task_state.xml
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas      5954 Nov 22 12:47 init_data.xml
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas 907960583 Nov 22 12:51 HITS.47523449._007138.pool.root.1
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas      1069 Nov 22 12:52 memory_monitor_summary.json
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas   1526164 Nov 22 12:52 agis_ddmendpoints.agis.ALL.json
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas   2326787 Nov 22 12:52 log.47523449._007138.job.log.tgz.1
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas      8664 Nov 22 12:52 heartbeat.json
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 12:52 boinc_mmap_file
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas        29 Nov 22 12:52 wrapper_checkpoint.txt
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas        95 Nov 22 12:52 pilot_heartbeat.json
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas       889 Nov 22 12:52 pilotlog.txt
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas   9798789 Nov 22 12:52 log.47523449._007138.job.log.1
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas       353 Nov 22 12:52 output.list
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas       620 Nov 22 12:52 runtime_log
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas  12144640 Nov 22 12:52 result.tar.gz
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas      9343 Nov 22 12:52 runtime_log.err
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas       668 Nov 22 12:52 fJxNDmkJMg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfsGKDmpitecm.diag
[2025-11-22 12:52:50] -rw-r--r-- 1 boincer umatlas     21263 Nov 22 12:52 stderr.txt
[2025-11-22 12:52:50] HITS file was successfully produced:
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas 907960583 Nov 22 12:51 shared/HITS.pool.root.1
[2025-11-22 12:52:50]  *** Contents of shared directory: ***
[2025-11-22 12:52:50] total 1298428
[2025-11-22 12:52:50] -rw-r--r-- 2 boincer umatlas 408865033 Nov 21 17:09 ATLAS.root_0
[2025-11-22 12:52:50] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 17:09 start_atlas.sh
[2025-11-22 12:52:50] -rw-r--r-- 2 boincer umatlas    590099 Nov 21 17:09 input.tar.gz
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas 907960583 Nov 22 12:51 HITS.pool.root.1
[2025-11-22 12:52:50] -rw------- 1 boincer umatlas  12144640 Nov 22 12:52 result.tar.gz
12:52:52 (5825): run_atlas exited; CPU time 541063.316875
12:52:52 (5825): called boinc_finish(0)

</stderr_txt>
]]>

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