Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:51:54 (3968560): wrapper (7.7.26015): starting
04:51:54 (3968560): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 04:51:54] Arguments: --nthreads 4
[2025-11-24 04:51:54] Threads: 4
[2025-11-24 04:51:54] Checking for CVMFS
[2025-11-24 04:51:54] No cvmfs_config command found, will try listing directly
[2025-11-24 04:51:54] CVMFS is ok
[2025-11-24 04:51:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 04:51:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 04:51:54] Further information can be found at the LHC@home message board.
[2025-11-24 04:51:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:51:54] Checking for apptainer binary...
[2025-11-24 04:51:54] which: no apptainer in ((null))
[2025-11-24 04:51:54] apptainer is not installed, using version from CVMFS
[2025-11-24 04:51:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:51:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-11-24 04:51:55] apptainer works
[2025-11-24 04:51:55] Set ATHENA_PROC_NUMBER=4
[2025-11-24 04:51:55] Set ATHENA_CORE_NUMBER=4
[2025-11-24 04:51:55] Starting ATLAS job with PandaID=6892537104
[2025-11-24 04:51:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:49:06]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:49:06] 2025-11-24 21:43:12,454 | INFO     | time since job start (64266s) is within the limit (172800.0s)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,112 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 22:49:06] 2025-11-24 21:43:13,122 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2806.5979999999986
[2025-11-24 22:49:06] 2025-11-24 21:43:13,135 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6892537104/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,135 | INFO     | extracted standard info from prmon json
[2025-11-24 22:49:06] 2025-11-24 21:43:13,136 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:49:06] 2025-11-24 21:43:13,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:49:06] 2025-11-24 21:43:13,154 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:49:06] 2025-11-24 21:43:13,156 | INFO     | sum of square deviations: 362042659597.077
[2025-11-24 22:49:06] 2025-11-24 21:43:13,178 | INFO     | sum of deviations: 1340869573720.36
[2025-11-24 22:49:06] 2025-11-24 21:43:13,178 | INFO     | mean x: 1763988441.068376
[2025-11-24 22:49:06] 2025-11-24 21:43:13,178 | INFO     | mean y: 2288200.6894586897
[2025-11-24 22:49:06] 2025-11-24 21:43:13,179 | INFO     | intersect: -6530860217.939858
[2025-11-24 22:49:06] 2025-11-24 21:43:13,180 | INFO     | chi2: 3.8867885218240183
[2025-11-24 22:49:06] 2025-11-24 21:43:13,181 | INFO     | sum of square deviations: 356909785317.0531
[2025-11-24 22:49:06] 2025-11-24 21:43:13,203 | INFO     | sum of deviations: 1552693641758.2983
[2025-11-24 22:49:06] 2025-11-24 21:43:13,203 | INFO     | mean x: 1763988288.5687022
[2025-11-24 22:49:06] 2025-11-24 21:43:13,203 | INFO     | mean y: 2294491.704198473
[2025-11-24 22:49:06] 2025-11-24 21:43:13,203 | INFO     | intersect: -7671727102.75462
[2025-11-24 22:49:06] 2025-11-24 21:43:13,205 | INFO     | chi2: 1.9164091169595387
[2025-11-24 22:49:06] 2025-11-24 21:43:13,205 | INFO     | current chi2=1.9164091169595387 (change=50.69427867765254 %)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,206 | INFO     | sum of square deviations: 351825656137.03
[2025-11-24 22:49:06] 2025-11-24 21:43:13,228 | INFO     | sum of deviations: 1566404410111.5193
[2025-11-24 22:49:06] 2025-11-24 21:43:13,228 | INFO     | mean x: 1763988136.0690317
[2025-11-24 22:49:06] 2025-11-24 21:43:13,228 | INFO     | mean y: 2294901.4928092044
[2025-11-24 22:49:06] 2025-11-24 21:43:13,228 | INFO     | intersect: -7851364283.176608
[2025-11-24 22:49:06] 2025-11-24 21:43:13,229 | INFO     | chi2: 1.861812173687044
[2025-11-24 22:49:06] 2025-11-24 21:43:13,230 | INFO     | current chi2=1.861812173687044 (change=2.848918990696252 %)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,230 | INFO     | right removable region: 1042
[2025-11-24 22:49:06] 2025-11-24 21:43:13,231 | INFO     | sum of square deviations: 356909741397.05316
[2025-11-24 22:49:06] 2025-11-24 21:43:13,253 | INFO     | sum of deviations: 1146475374828.8008
[2025-11-24 22:49:06] 2025-11-24 21:43:13,253 | INFO     | mean x: 1763988593.5687022
[2025-11-24 22:49:06] 2025-11-24 21:43:13,254 | INFO     | mean y: 2293967.5305343512
[2025-11-24 22:49:06] 2025-11-24 21:43:13,254 | INFO     | intersect: -5664039139.795812
[2025-11-24 22:49:06] 2025-11-24 21:43:13,255 | INFO     | chi2: 2.121662073262961
[2025-11-24 22:49:06] 2025-11-24 21:43:13,255 | INFO     | current chi2=2.121662073262961 (change=45.41349339306752 %)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,257 | INFO     | sum of square deviations: 351825568297.0299
[2025-11-24 22:49:06] 2025-11-24 21:43:13,278 | INFO     | sum of deviations: 1110624798084.9653
[2025-11-24 22:49:06] 2025-11-24 21:43:13,279 | INFO     | mean x: 1763988746.0690317
[2025-11-24 22:49:06] 2025-11-24 21:43:13,279 | INFO     | mean y: 2295042.5282837967
[2025-11-24 22:49:06] 2025-11-24 21:43:13,279 | INFO     | intersect: -5566173600.64056
[2025-11-24 22:49:06] 2025-11-24 21:43:13,281 | INFO     | chi2: 2.107400943502537
[2025-11-24 22:49:06] 2025-11-24 21:43:13,281 | INFO     | current chi2=2.107400943502537 (change=0.6721678225831442 %)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,281 | INFO     | left removable region: 20
[2025-11-24 22:49:06] 2025-11-24 21:43:13,282 | INFO     | sum of square deviations: 330999248324.56757
[2025-11-24 22:49:06] 2025-11-24 21:43:13,303 | INFO     | sum of deviations: 1288747864750.5054
[2025-11-24 22:49:06] 2025-11-24 21:43:13,304 | INFO     | mean x: 1763988715.5694716
[2025-11-24 22:49:06] 2025-11-24 21:43:13,304 | INFO     | mean y: 2303145.7534246575
[2025-11-24 22:49:06] 2025-11-24 21:43:13,304 | INFO     | intersect: -6865799129.829328
[2025-11-24 22:49:06] 2025-11-24 21:43:13,305 | INFO     | chi2: 0.07427790902959218
[2025-11-24 22:49:06] 2025-11-24 21:43:13,305 | INFO     | current memory leak: 3.89 B/s (using 1022 data points, chi2=0.07)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | could have reported an average CPU frequency of 2686 MHz (39 samples)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | ..............................
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | . Timing measurements:
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | . get job = 0 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | . initial setup = 1 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | . payload setup = 6 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | . stage-in = 0 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | . payload execution = 64228 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,307 | INFO     | . stage-out = 2 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,308 | INFO     | . log creation = 0 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,308 | INFO     | ..............................
[2025-11-24 22:49:06] 2025-11-24 21:43:13,406 | INFO     | 
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | job summary report
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | --------------------------------------------------
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | PanDA job id: 6892537104
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | task id: 47493029
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | errors: (none)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | pilot state: finished 
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | transexitcode: 0
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | exeerrorcode: 0
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | exeerrordiag: 
[2025-11-24 22:49:06] 2025-11-24 21:43:13,407 | INFO     | exitcode: 0
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | exitmsg: OK
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | cpuconsumptiontime: 248616 s
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | nevents: 1000
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | neventsw: 0
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | pid: 3989827
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | pgrp: 3989827
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | corecount: 4
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | event service: False
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | sizes: {0: 2298636, 1: 2298835, 6: 2299097, 12: 2299125, 64239: 2354016, 64240: 2354015, 64242: 2364006, 64243: 2364062, 64252: 2364308}
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | --------------------------------------------------
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | 
[2025-11-24 22:49:06] 2025-11-24 21:43:13,408 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-11-24 22:49:06] 2025-11-24 21:43:13,431 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,431 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,431 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,431 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,432 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,433 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,433 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,433 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:49:06] 2025-11-24 21:43:13,433 | INFO     | job 6892537104 has completed (purged errors)
[2025-11-24 22:49:06] 2025-11-24 21:43:13,433 | INFO     | overall cleanup function is called
[2025-11-24 22:49:06] 2025-11-24 21:43:13,967 | INFO     | PID=3975986 has CPU usage=20.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 22:49:06] 2025-11-24 21:43:13,967 | INFO     | .. there are 4 such processes running
[2025-11-24 22:49:06] 2025-11-24 21:43:14,447 | INFO     | --- collectZombieJob: --- 10, [3989827]
[2025-11-24 22:49:06] 2025-11-24 21:43:14,447 | INFO     | zombie collector waiting for pid 3989827
[2025-11-24 22:49:06] 2025-11-24 21:43:14,447 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:49:06] 2025-11-24 21:43:14,447 | INFO     | collected zombie processes
[2025-11-24 22:49:06] 2025-11-24 21:43:14,447 | INFO     | will attempt to kill all subprocesses of pid=3989827
[2025-11-24 22:49:06] 2025-11-24 21:43:14,760 | INFO     | process IDs to be killed: [3989827] (in reverse order)
[2025-11-24 22:49:06] 2025-11-24 21:43:14,843 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:49:06] 2025-11-24 21:43:14,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:49:06] 2025-11-24 21:43:14,854 | INFO     | did not find any defunct processes belonging to 3989827
[2025-11-24 22:49:06] 2025-11-24 21:43:14,863 | INFO     | did not find any defunct processes belonging to 3989827
[2025-11-24 22:49:06] 2025-11-24 21:43:14,864 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:49:06] 2025-11-24 21:43:14,864 | INFO     | ready for new job
[2025-11-24 22:49:06] 2025-11-24 21:43:14,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:49:06] 2025-11-24 21:43:14,869 | INFO     | ***************************************
[2025-11-24 22:49:06] 2025-11-24 21:43:14,869 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:49:06] 2025-11-24 21:43:14,869 | INFO     | ***************************************
[2025-11-24 22:49:06] 2025-11-24 21:43:14,869 | INFO     | 
[2025-11-24 22:49:06] 2025-11-24 21:43:14,871 | INFO     | architecture information:
[2025-11-24 22:49:06] 2025-11-24 21:43:14,872 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:49:06] 2025-11-24 21:43:14,884 | INFO     | cat /etc/os-release:
[2025-11-24 22:49:06] NAME="CentOS Linux"
[2025-11-24 22:49:06] VERSION="7 (Core)"
[2025-11-24 22:49:06] ID="centos"
[2025-11-24 22:49:06] ID_LIKE="rhel fedora"
[2025-11-24 22:49:06] VERSION_ID="7"
[2025-11-24 22:49:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:49:06] ANSI_COLOR="0;31"
[2025-11-24 22:49:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:49:06] HOME_URL="https://www.centos.org/"
[2025-11-24 22:49:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:49:06] 
[2025-11-24 22:49:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:49:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:49:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:49:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:49:06] 
[2025-11-24 22:49:06] 2025-11-24 21:43:14,884 | INFO     | ***************************************
[2025-11-24 22:49:06] 2025-11-24 21:43:15,386 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-11-24 22:49:06] 2025-11-24 21:43:15,403 | INFO     | sufficient remaining disk space (676901945344 B)
[2025-11-24 22:49:06] 2025-11-24 21:43:15,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:49:06] 2025-11-24 21:43:15,405 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:49:06] 2025-11-24 21:43:15,405 | INFO     | update_server=False
[2025-11-24 22:49:06] 2025-11-24 21:43:15,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:49:06] 2025-11-24 21:43:15,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:49:06] 2025-11-24 21:43:15,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:49:06] 2025-11-24 21:43:15,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:49:06] 2025-11-24 21:43:15,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:49:06] 2025-11-24 21:43:15,924 | INFO     | aborting loop
[2025-11-24 22:49:06] 2025-11-24 21:43:16,096 | INFO     | all payload control threads have been joined
[2025-11-24 22:49:06] 2025-11-24 21:43:16,396 | INFO     | all data control threads have been joined
[2025-11-24 22:49:06] 2025-11-24 21:43:16,410 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:16,412 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:16,474 | INFO     | all job control threads have been joined
[2025-11-24 22:49:06] 2025-11-24 21:43:16,529 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:16,798 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:16,832 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:16,915 | INFO     | [job] validate thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:16,927 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,101 | INFO     | [payload] control thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,104 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,390 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,400 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,401 | INFO     | [data] control thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,411 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,479 | INFO     | [job] control thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:17,880 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:19,413 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:49:06] 2025-11-24 21:43:46,459 | INFO     | PID=3975986 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 22:49:06] 2025-11-24 21:43:46,459 | INFO     | .. there are 4 such processes running
[2025-11-24 22:49:06] 2025-11-24 21:43:46,459 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:49:06] 2025-11-24 21:43:46,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:49:06] 2025-11-24 21:43:46,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:49:06] 2025-11-24 21:43:51,005 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:49:06] 2025-11-24 21:43:51,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22997703329600)>', '<ExcThread(monitor, started 22997259761408)>']
[2025-11-24 22:49:06] 2025-11-24 21:43:52,487 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:49:06] 2025-11-24 21:43:52,487 | INFO     | [monitor] control thread has ended
[2025-11-24 22:49:06] 2025-11-24 21:43:56,807 | INFO     | all workflow threads have been joined
[2025-11-24 22:49:06] 2025-11-24 21:43:56,807 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:49:06] 2025-11-24 21:43:56,807 | INFO     | traces error code: 0
[2025-11-24 22:49:06] 2025-11-24 21:43:56,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:49:06] 2025-11-24 21:43:56,991 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:49:06] 2025-11-24 21:43:56,994 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:49:06] 2025-11-24 21:43:56,997 [wrapper] pilotpid: 3975986
[2025-11-24 22:49:06] 2025-11-24 21:43:57,000 [wrapper] Pilot exit status: 0
[2025-11-24 22:49:06] 2025-11-24 21:43:57,011 [wrapper] pandaids: 6892537104
[2025-11-24 22:49:06] 2025-11-24 21:43:57,089 [wrapper] cleanup supervisor_pilot  688616 3975987
[2025-11-24 22:49:06] 2025-11-24 21:43:57,092 [wrapper] Test setup, not cleaning
[2025-11-24 22:49:06] 2025-11-24 21:43:57,095 [wrapper] apfmon messages muted
[2025-11-24 22:49:06] 2025-11-24 21:43:57,098 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:49:06] 2025-11-24 21:43:57,101 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:49:06]  *** Error codes and diagnostics ***
[2025-11-24 22:49:06]     "exeErrorCode": 0,
[2025-11-24 22:49:06]     "exeErrorDiag": "",
[2025-11-24 22:49:06]     "pilotErrorCode": 0,
[2025-11-24 22:49:06]     "pilotErrorDiag": "",
[2025-11-24 22:49:06]  *** Listing of results directory ***
[2025-11-24 22:49:06] total 1320672
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:27 pilot3.tar.gz
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:30 queuedata.json
[2025-11-24 22:49:06] -rwx------ 1 boinc boinc     36292 Nov 19 08:30 runpilot2-wrapper.sh
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc       100 Nov 24 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:49:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 04:51 run_atlas
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc       105 Nov 24 04:51 job.xml
[2025-11-24 22:49:06] -rw-r--r-- 2 boinc boinc 408640484 Nov 24 04:51 EVNT.47493027._000206.pool.root.1
[2025-11-24 22:49:06] -rw-r--r-- 2 boinc boinc    590095 Nov 24 04:51 input.tar.gz
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc      6635 Nov 24 04:51 init_data.xml
[2025-11-24 22:49:06] -rw-r--r-- 2 boinc boinc     15120 Nov 24 04:51 start_atlas.sh
[2025-11-24 22:49:06] drwxrwx--x 2 boinc boinc      4096 Nov 24 04:51 shared
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc         0 Nov 24 04:51 boinc_lockfile
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc      2773 Nov 24 04:51 pandaJob.out
[2025-11-24 22:49:06] -rw------- 1 boinc boinc    989786 Nov 24 04:52 agis_schedconf.cvmfs.json
[2025-11-24 22:49:06] drwx------ 5 boinc boinc      4096 Nov 24 04:52 pilot3
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc       532 Nov 24 22:33 boinc_task_state.xml
[2025-11-24 22:49:06] -rw------- 1 boinc boinc 918305962 Nov 24 22:42 HITS.47493029._002012.pool.root.1
[2025-11-24 22:49:06] -rw------- 1 boinc boinc        95 Nov 24 22:42 pilot_heartbeat.json
[2025-11-24 22:49:06] -rw------- 1 boinc boinc      1046 Nov 24 22:42 memory_monitor_summary.json
[2025-11-24 22:49:06] -rw------- 1 boinc boinc   1516227 Nov 24 22:43 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:49:06] -rw------- 1 boinc boinc   1777842 Nov 24 22:43 log.47493029._002012.job.log.tgz.1
[2025-11-24 22:49:06] -rw------- 1 boinc boinc      8643 Nov 24 22:43 heartbeat.json
[2025-11-24 22:49:06] -rw------- 1 boinc boinc      4833 Nov 24 22:43 pilotlog.txt
[2025-11-24 22:49:06] -rw------- 1 boinc boinc   8976827 Nov 24 22:43 log.47493029._002012.job.log.1
[2025-11-24 22:49:06] -rw------- 1 boinc boinc       353 Nov 24 22:43 output.list
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc       620 Nov 24 22:43 runtime_log
[2025-11-24 22:49:06] -rw------- 1 boinc boinc  10772480 Nov 24 22:43 result.tar.gz
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc      9070 Nov 24 22:43 runtime_log.err
[2025-11-24 22:49:06] -rw------- 1 boinc boinc       671 Nov 24 22:43 AMAMDmOprf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmd1FKDmRXBo3m.diag
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc        28 Nov 24 22:49 wrapper_checkpoint.txt
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc      8192 Nov 24 22:49 boinc_mmap_file
[2025-11-24 22:49:06] -rw-r--r-- 1 boinc boinc     21198 Nov 24 22:49 stderr.txt
[2025-11-24 22:49:06] HITS file was successfully produced:
[2025-11-24 22:49:06] -rw------- 1 boinc boinc 918305962 Nov 24 22:42 shared/HITS.pool.root.1
[2025-11-24 22:49:06]  *** Contents of shared directory: ***
[2025-11-24 22:49:06] total 1306972
[2025-11-24 22:49:06] -rw-r--r-- 2 boinc boinc 408640484 Nov 24 04:51 ATLAS.root_0
[2025-11-24 22:49:06] -rw-r--r-- 2 boinc boinc    590095 Nov 24 04:51 input.tar.gz
[2025-11-24 22:49:06] -rw-r--r-- 2 boinc boinc     15120 Nov 24 04:51 start_atlas.sh
[2025-11-24 22:49:06] -rw------- 1 boinc boinc 918305962 Nov 24 22:42 HITS.pool.root.1
[2025-11-24 22:49:06] -rw------- 1 boinc boinc  10772480 Nov 24 22:43 result.tar.gz
22:49:07 (3968560): run_atlas exited; CPU time 251068.513987
22:49:07 (3968560): called boinc_finish(0)

</stderr_txt>
]]>

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