Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:17:11 (527742): wrapper (7.7.26015): starting
13:17:11 (527742): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 13:17:11] Arguments: --nthreads 3
[2025-11-24 13:17:11] Threads: 3
[2025-11-24 13:17:11] Checking for CVMFS
[2025-11-24 13:17:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:17:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:17:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:17:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:17:11] 2.9.2.0 3581133 8456 95724 153246 1 56 27688137 36864001 0 130560 0 3143431 99.828 565900 6815 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 13:17:11] CVMFS is ok
[2025-11-24 13:17:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:17:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:17:11] Further information can be found at the LHC@home message board.
[2025-11-24 13:17:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:17:11] Checking for apptainer binary...
[2025-11-24 13:17:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:17:11] Running /usr/bin/apptainer --version
[2025-11-24 13:17:12] apptainer version 1.4.1-1.1
[2025-11-24 13:17:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:17:12] magicA250a
[2025-11-24 13:17:12] apptainer works
[2025-11-24 13:17:12] Set ATHENA_PROC_NUMBER=3
[2025-11-24 13:17:12] Set ATHENA_CORE_NUMBER=3
[2025-11-24 13:17:12] Starting ATLAS job with PandaID=6894268441
[2025-11-24 13:17:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:23:39]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | job 6894268441 has completed (purged errors)
[2025-11-24 21:23:39] 2025-11-24 20:22:43,337 | INFO     | overall cleanup function is called
[2025-11-24 21:23:39] 2025-11-24 20:22:44,346 | INFO     | --- collectZombieJob: --- 10, [537905]
[2025-11-24 21:23:39] 2025-11-24 20:22:44,346 | INFO     | zombie collector waiting for pid 537905
[2025-11-24 21:23:39] 2025-11-24 20:22:44,346 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:23:39] 2025-11-24 20:22:44,346 | INFO     | collected zombie processes
[2025-11-24 21:23:39] 2025-11-24 20:22:44,347 | INFO     | will attempt to kill all subprocesses of pid=537905
[2025-11-24 21:23:39] 2025-11-24 20:22:44,389 | INFO     | process IDs to be killed: [537905] (in reverse order)
[2025-11-24 21:23:39] 2025-11-24 20:22:44,412 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:23:39] 2025-11-24 20:22:44,413 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:23:39] 2025-11-24 20:22:44,414 | INFO     | did not find any defunct processes belonging to 537905
[2025-11-24 21:23:39] 2025-11-24 20:22:44,415 | INFO     | did not find any defunct processes belonging to 537905
[2025-11-24 21:23:39] 2025-11-24 20:22:44,416 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:23:39] 2025-11-24 20:22:44,416 | INFO     | ready for new job
[2025-11-24 21:23:39] 2025-11-24 20:22:44,416 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:23:39] 2025-11-24 20:22:44,417 | INFO     | ***************************************
[2025-11-24 21:23:39] 2025-11-24 20:22:44,417 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:23:39] 2025-11-24 20:22:44,417 | INFO     | ***************************************
[2025-11-24 21:23:39] 2025-11-24 20:22:44,417 | INFO     | 
[2025-11-24 21:23:39] 2025-11-24 20:22:44,417 | INFO     | architecture information:
[2025-11-24 21:23:39] 2025-11-24 20:22:44,418 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:23:39] 2025-11-24 20:22:44,426 | INFO     | cat /etc/os-release:
[2025-11-24 21:23:39] NAME="CentOS Linux"
[2025-11-24 21:23:39] VERSION="7 (Core)"
[2025-11-24 21:23:39] ID="centos"
[2025-11-24 21:23:39] ID_LIKE="rhel fedora"
[2025-11-24 21:23:39] VERSION_ID="7"
[2025-11-24 21:23:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:23:39] ANSI_COLOR="0;31"
[2025-11-24 21:23:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:23:39] HOME_URL="https://www.centos.org/"
[2025-11-24 21:23:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:23:39] 
[2025-11-24 21:23:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:23:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:23:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:23:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:23:39] 
[2025-11-24 21:23:39] 2025-11-24 20:22:44,426 | INFO     | ***************************************
[2025-11-24 21:23:39] 2025-11-24 20:22:44,929 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 21:23:39] 2025-11-24 20:22:44,940 | INFO     | sufficient remaining disk space (329080897536 B)
[2025-11-24 21:23:39] 2025-11-24 20:22:44,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:23:39] 2025-11-24 20:22:44,941 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:23:39] 2025-11-24 20:22:44,941 | INFO     | update_server=False
[2025-11-24 21:23:39] 2025-11-24 20:22:44,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:23:39] 2025-11-24 20:22:44,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:23:39] 2025-11-24 20:22:44,941 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:23:39] 2025-11-24 20:22:44,941 | INFO     | aborting loop
[2025-11-24 21:23:39] 2025-11-24 20:22:45,615 | INFO     | all data control threads have been joined
[2025-11-24 21:23:39] 2025-11-24 20:22:45,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:23:39] 2025-11-24 20:22:45,922 | INFO     | all job control threads have been joined
[2025-11-24 21:23:39] 2025-11-24 20:22:45,946 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:45,946 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:45,947 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:46,158 | INFO     | [job] validate thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:46,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:23:39] 2025-11-24 20:22:46,235 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:46,385 | INFO     | all payload control threads have been joined
[2025-11-24 21:23:39] 2025-11-24 20:22:46,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:46,621 | INFO     | [data] control thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:46,821 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:46,924 | INFO     | [job] control thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:47,055 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:47,109 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:47,332 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:47,390 | INFO     | [payload] control thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:47,404 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:48,179 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:22:49,692 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:23:39] 2025-11-24 20:23:15,753 | INFO     | PID=531465 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 21:23:39] 2025-11-24 20:23:15,753 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:23:39] 2025-11-24 20:23:15,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:23:39] 2025-11-24 20:23:15,753 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:23:39] 2025-11-24 20:23:32,729 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:23:39] 2025-11-24 20:23:34,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140225479485248)>', '<ExcThread(monitor, started 140225206523648)>']
[2025-11-24 21:23:39] 2025-11-24 20:23:34,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:23:39] 2025-11-24 20:23:34,842 | INFO     | [monitor] control thread has ended
[2025-11-24 21:23:39] 2025-11-24 20:23:39,590 | INFO     | all workflow threads have been joined
[2025-11-24 21:23:39] 2025-11-24 20:23:39,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:23:39] 2025-11-24 20:23:39,591 | INFO     | traces error code: 0
[2025-11-24 21:23:39] 2025-11-24 20:23:39,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:23:39] 2025-11-24 20:23:39,643 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:23:39] 2025-11-24 20:23:39,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:23:39] 2025-11-24 20:23:39,648 [wrapper] pilotpid: 531465
[2025-11-24 21:23:39] 2025-11-24 20:23:39,650 [wrapper] Pilot exit status: 0
[2025-11-24 21:23:39] 2025-11-24 20:23:39,658 [wrapper] pandaids: 6894268441
[2025-11-24 21:23:39] 2025-11-24 20:23:39,674 [wrapper] cleanup supervisor_pilot  587606 531466
[2025-11-24 21:23:39] 2025-11-24 20:23:39,677 [wrapper] Test setup, not cleaning
[2025-11-24 21:23:39] 2025-11-24 20:23:39,679 [wrapper] apfmon messages muted
[2025-11-24 21:23:39] 2025-11-24 20:23:39,681 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:23:39] 2025-11-24 20:23:39,684 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:23:39]  *** Error codes and diagnostics ***
[2025-11-24 21:23:39]     "exeErrorCode": 0,
[2025-11-24 21:23:39]     "exeErrorDiag": "",
[2025-11-24 21:23:39]     "pilotErrorCode": 0,
[2025-11-24 21:23:39]     "pilotErrorDiag": "",
[2025-11-24 21:23:39]  *** Listing of results directory ***
[2025-11-24 21:23:39] total 1315972
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-24 21:23:39] -rwx------ 1 boinc boinc     36292 Nov 21 06:46 runpilot2-wrapper.sh
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:46 queuedata.json
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc       100 Nov 24 13:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:23:39] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 13:17 run_atlas
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc       105 Nov 24 13:17 job.xml
[2025-11-24 21:23:39] -rw-r--r-- 2 boinc boinc 409869056 Nov 24 13:17 EVNT.47493127._002266.pool.root.1
[2025-11-24 21:23:39] -rw-r--r-- 2 boinc boinc    590100 Nov 24 13:17 input.tar.gz
[2025-11-24 21:23:39] -rw-r--r-- 2 boinc boinc     15847 Nov 24 13:17 start_atlas.sh
[2025-11-24 21:23:39] drwxrwx--x 2 boinc boinc      4096 Nov 24 13:17 shared
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc         0 Nov 24 13:17 boinc_setup_complete
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc      6442 Nov 24 13:17 init_data.xml
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc         0 Nov 24 13:17 boinc_lockfile
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc      2785 Nov 24 13:17 pandaJob.out
[2025-11-24 21:23:39] -rw------- 1 boinc boinc    988279 Nov 24 13:17 agis_schedconf.cvmfs.json
[2025-11-24 21:23:39] drwx------ 5 boinc boinc      4096 Nov 24 13:17 pilot3
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc       531 Nov 24 21:20 boinc_task_state.xml
[2025-11-24 21:23:39] -rw------- 1 boinc boinc 923250650 Nov 24 21:22 HITS.47533967._002375.pool.root.1
[2025-11-24 21:23:39] -rw------- 1 boinc boinc      1028 Nov 24 21:22 memory_monitor_summary.json
[2025-11-24 21:23:39] -rw------- 1 boinc boinc   1516227 Nov 24 21:22 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:23:39] -rw------- 1 boinc boinc   1171607 Nov 24 21:22 log.47533967._002375.job.log.tgz.1
[2025-11-24 21:23:39] -rw------- 1 boinc boinc        95 Nov 24 21:22 pilot_heartbeat.json
[2025-11-24 21:23:39] -rw------- 1 boinc boinc      8575 Nov 24 21:22 heartbeat.json
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc        28 Nov 24 21:23 wrapper_checkpoint.txt
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc      8192 Nov 24 21:23 boinc_mmap_file
[2025-11-24 21:23:39] -rw------- 1 boinc boinc      4751 Nov 24 21:23 pilotlog.txt
[2025-11-24 21:23:39] -rw------- 1 boinc boinc   4094990 Nov 24 21:23 log.47533967._002375.job.log.1
[2025-11-24 21:23:39] -rw------- 1 boinc boinc       353 Nov 24 21:23 output.list
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc       620 Nov 24 21:23 runtime_log
[2025-11-24 21:23:39] -rw------- 1 boinc boinc   5283840 Nov 24 21:23 result.tar.gz
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc      8918 Nov 24 21:23 runtime_log.err
[2025-11-24 21:23:39] -rw------- 1 boinc boinc       669 Nov 24 21:23 DiGODmK9Yg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk8IKDmKepcDm.diag
[2025-11-24 21:23:39] -rw-r--r-- 1 boinc boinc     12464 Nov 24 21:23 stderr.txt
[2025-11-24 21:23:39] HITS file was successfully produced:
[2025-11-24 21:23:39] -rw------- 1 boinc boinc 923250650 Nov 24 21:22 shared/HITS.pool.root.1
[2025-11-24 21:23:39]  *** Contents of shared directory: ***
[2025-11-24 21:23:39] total 1307640
[2025-11-24 21:23:39] -rw-r--r-- 2 boinc boinc 409869056 Nov 24 13:17 ATLAS.root_0
[2025-11-24 21:23:39] -rw-r--r-- 2 boinc boinc    590100 Nov 24 13:17 input.tar.gz
[2025-11-24 21:23:39] -rw-r--r-- 2 boinc boinc     15847 Nov 24 13:17 start_atlas.sh
[2025-11-24 21:23:39] -rw------- 1 boinc boinc 923250650 Nov 24 21:22 HITS.pool.root.1
[2025-11-24 21:23:39] -rw------- 1 boinc boinc   5283840 Nov 24 21:23 result.tar.gz
21:23:41 (527742): run_atlas exited; CPU time 86102.486795
21:23:41 (527742): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN