Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:43:24 (643004): wrapper (7.7.26015): starting
16:43:24 (643004): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 16:43:24] Arguments: --nthreads 9
[2025-11-21 16:43:24] Threads: 9
[2025-11-21 16:43:24] Checking for CVMFS
[2025-11-21 16:43:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 16:43:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 16:43:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 16:43:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 16:43:26] 2.13.2.0 5664 27129 204528 153143 1 359 38617709 39288833 7393 16776704 0 18538488 99.637 12925887 27782 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 16:43:26] CVMFS is ok
[2025-11-21 16:43:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 16:43:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 16:43:26] Further information can be found at the LHC@home message board.
[2025-11-21 16:43:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 16:43:26] Checking for apptainer binary...
[2025-11-21 16:43:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 16:43:26] Running /usr/bin/apptainer --version
[2025-11-21 16:43:26] apptainer version 1.4.4-1.el9
[2025-11-21 16:43:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 16:43:26] c-210-30.aglt2.org
[2025-11-21 16:43:26] apptainer works
[2025-11-21 16:43:26] Set ATHENA_PROC_NUMBER=9
[2025-11-21 16:43:26] Set ATHENA_CORE_NUMBER=9
[2025-11-21 16:43:27] Starting ATLAS job with PandaID=6894267835
[2025-11-21 16:43:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 11:38:33]  *** The last 200 lines of the pilot log: ***
[2025-11-22 11:38:33] 2025-11-22 16:37:58,572 | INFO     | fitting pss+swap vs Time
[2025-11-22 11:38:33] 2025-11-22 16:37:58,574 | INFO     | sum of square deviations: 426370662148.3308
[2025-11-22 11:38:33] 2025-11-22 16:37:58,612 | INFO     | sum of deviations: 3405396373948.6353
[2025-11-22 11:38:33] 2025-11-22 16:37:58,614 | INFO     | mean x: 1763795498.118705
[2025-11-22 11:38:33] 2025-11-22 16:37:58,615 | INFO     | mean y: 3037939.6088129496
[2025-11-22 11:38:33] 2025-11-22 16:37:58,615 | INFO     | intersect: -14084288715.128939
[2025-11-22 11:38:33] 2025-11-22 16:37:58,616 | INFO     | chi2: 15.947293004440787
[2025-11-22 11:38:33] 2025-11-22 16:37:58,618 | INFO     | sum of square deviations: 420645559595.1707
[2025-11-22 11:38:33] 2025-11-22 16:37:58,649 | INFO     | sum of deviations: 3857819174614.649
[2025-11-22 11:38:33] 2025-11-22 16:37:58,650 | INFO     | mean x: 1763795345.6260164
[2025-11-22 11:38:33] 2025-11-22 16:37:58,650 | INFO     | mean y: 3049988.3107497743
[2025-11-22 11:38:33] 2025-11-22 16:37:58,650 | INFO     | intersect: -16173047320.313347
[2025-11-22 11:38:33] 2025-11-22 16:37:58,651 | INFO     | chi2: 11.82015037397731
[2025-11-22 11:38:33] 2025-11-22 16:37:58,652 | INFO     | current chi2=11.82015037397731 (change=25.879894658699797 %)
[2025-11-22 11:38:33] 2025-11-22 16:37:58,653 | INFO     | sum of square deviations: 414971946379.3914
[2025-11-22 11:38:33] 2025-11-22 16:37:58,688 | INFO     | sum of deviations: 4264687538011.966
[2025-11-22 11:38:33] 2025-11-22 16:37:58,689 | INFO     | mean x: 1763795193.1333938
[2025-11-22 11:38:33] 2025-11-22 16:37:58,689 | INFO     | mean y: 3060926.5444646096
[2025-11-22 11:38:33] 2025-11-22 16:37:58,689 | INFO     | intersect: -18123550873.098278
[2025-11-22 11:38:33] 2025-11-22 16:37:58,690 | INFO     | chi2: 8.474077003425988
[2025-11-22 11:38:33] 2025-11-22 16:37:58,691 | INFO     | current chi2=8.474077003425988 (change=28.3082132179797 %)
[2025-11-22 11:38:33] 2025-11-22 16:37:58,692 | INFO     | sum of square deviations: 409349522962.77124
[2025-11-22 11:38:33] 2025-11-22 16:37:58,724 | INFO     | sum of deviations: 4443576297167.045
[2025-11-22 11:38:33] 2025-11-22 16:37:58,724 | INFO     | mean x: 1763795040.6399271
[2025-11-22 11:38:33] 2025-11-22 16:37:58,724 | INFO     | mean y: 3065775.592525068
[2025-11-22 11:38:33] 2025-11-22 16:37:58,724 | INFO     | intersect: -19143305225.213943
[2025-11-22 11:38:33] 2025-11-22 16:37:58,726 | INFO     | chi2: 7.599020213041317
[2025-11-22 11:38:33] 2025-11-22 16:37:58,726 | INFO     | current chi2=7.599020213041317 (change=10.326278484735193 %)
[2025-11-22 11:38:33] 2025-11-22 16:37:58,726 | INFO     | right removable region: 1096
[2025-11-22 11:38:33] 2025-11-22 16:37:58,728 | INFO     | sum of square deviations: 420644529307.4228
[2025-11-22 11:38:33] 2025-11-22 16:37:58,759 | INFO     | sum of deviations: 2940152533028.8066
[2025-11-22 11:38:33] 2025-11-22 16:37:58,760 | INFO     | mean x: 1763795650.625113
[2025-11-22 11:38:33] 2025-11-22 16:37:58,760 | INFO     | mean y: 3050328.56097561
[2025-11-22 11:38:33] 2025-11-22 16:37:58,760 | INFO     | intersect: -12325240873.677912
[2025-11-22 11:38:33] 2025-11-22 16:37:58,761 | INFO     | chi2: 11.929114188877852
[2025-11-22 11:38:33] 2025-11-22 16:37:58,762 | INFO     | current chi2=11.929114188877852 (change=25.196619980858237 %)
[2025-11-22 11:38:33] 2025-11-22 16:37:58,763 | INFO     | sum of square deviations: 414969818396.6576
[2025-11-22 11:38:33] 2025-11-22 16:37:58,802 | INFO     | sum of deviations: 2559203012119.552
[2025-11-22 11:38:33] 2025-11-22 16:37:58,803 | INFO     | mean x: 1763795803.1324863
[2025-11-22 11:38:33] 2025-11-22 16:37:58,803 | INFO     | mean y: 3060563.735934664
[2025-11-22 11:38:33] 2025-11-22 16:37:58,803 | INFO     | intersect: -10874625793.26501
[2025-11-22 11:38:33] 2025-11-22 16:37:58,807 | INFO     | chi2: 9.343613426191233
[2025-11-22 11:38:33] 2025-11-22 16:37:58,808 | INFO     | current chi2=9.343613426191233 (change=21.673870513346408 %)
[2025-11-22 11:38:33] 2025-11-22 16:37:58,808 | INFO     | left removable region: 20
[2025-11-22 11:38:33] 2025-11-22 16:37:58,809 | INFO     | sum of square deviations: 386286971022.39026
[2025-11-22 11:38:33] 2025-11-22 16:37:58,866 | INFO     | sum of deviations: 3369479519823.143
[2025-11-22 11:38:33] 2025-11-22 16:37:58,867 | INFO     | mean x: 1763795620.1542752
[2025-11-22 11:38:33] 2025-11-22 16:37:58,867 | INFO     | mean y: 3096068.8485130114
[2025-11-22 11:38:33] 2025-11-22 16:37:58,867 | INFO     | intersect: -15382028631.407333
[2025-11-22 11:38:33] 2025-11-22 16:37:58,869 | INFO     | chi2: 0.32786054171118434
[2025-11-22 11:38:33] 2025-11-22 16:37:58,869 | INFO     | current memory leak: 8.72 B/s (using 1076 data points, chi2=0.33)
[2025-11-22 11:38:33] 2025-11-22 16:37:58,870 | INFO     | could have reported an average CPU frequency of 2599 MHz (40 samples)
[2025-11-22 11:38:33] 2025-11-22 16:37:58,870 | INFO     | ..............................
[2025-11-22 11:38:33] 2025-11-22 16:37:58,870 | INFO     | . Timing measurements:
[2025-11-22 11:38:33] 2025-11-22 16:37:58,874 | INFO     | . get job = 0 s
[2025-11-22 11:38:33] 2025-11-22 16:37:58,874 | INFO     | . initial setup = 5 s
[2025-11-22 11:38:33] 2025-11-22 16:37:58,874 | INFO     | . payload setup = 47 s
[2025-11-22 11:38:33] 2025-11-22 16:37:58,875 | INFO     | . stage-in = 0 s
[2025-11-22 11:38:33] 2025-11-22 16:37:58,875 | INFO     | . payload execution = 67855 s
[2025-11-22 11:38:33] 2025-11-22 16:37:58,875 | INFO     | . stage-out = 7 s
[2025-11-22 11:38:33] 2025-11-22 16:37:58,875 | INFO     | . log creation = 2 s
[2025-11-22 11:38:33] 2025-11-22 16:37:58,875 | INFO     | ..............................
[2025-11-22 11:38:33] 2025-11-22 16:37:59,487 | INFO     | 
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | job summary report
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | --------------------------------------------------
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | PanDA job id: 6894267835
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | task id: 47533967
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | errors: (none)
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | pilot state: finished 
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | transexitcode: 0
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | exeerrorcode: 0
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | exeerrordiag: 
[2025-11-22 11:38:33] 2025-11-22 16:37:59,488 | INFO     | exitcode: 0
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | exitmsg: OK
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | cpuconsumptiontime: 299161 s
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | nevents: 1000
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | neventsw: 0
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | pid: 655415
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | pgrp: 655415
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | corecount: 9
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | event service: False
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | sizes: {0: 2298636, 1: 2298664, 2: 2298835, 13: 2298863, 24: 2298919, 32: 2299209, 35: 2299365, 67907: 2357438, 67916: 2366432, 67917: 2366488, 67949: 2366734}
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | --------------------------------------------------
[2025-11-22 11:38:33] 2025-11-22 16:37:59,489 | INFO     | 
[2025-11-22 11:38:33] 2025-11-22 16:37:59,490 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-22 11:38:33] 2025-11-22 16:37:59,579 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,579 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,581 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 11:38:33] 2025-11-22 16:37:59,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,581 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 11:38:33] 2025-11-22 16:37:59,581 | INFO     | job 6894267835 has completed (purged errors)
[2025-11-22 11:38:33] 2025-11-22 16:37:59,581 | INFO     | overall cleanup function is called
[2025-11-22 11:38:33] 2025-11-22 16:38:00,610 | INFO     | --- collectZombieJob: --- 10, [655415]
[2025-11-22 11:38:33] 2025-11-22 16:38:00,611 | INFO     | zombie collector waiting for pid 655415
[2025-11-22 11:38:33] 2025-11-22 16:38:00,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 11:38:33] 2025-11-22 16:38:00,611 | INFO     | collected zombie processes
[2025-11-22 11:38:33] 2025-11-22 16:38:00,611 | INFO     | will attempt to kill all subprocesses of pid=655415
[2025-11-22 11:38:33] 2025-11-22 16:38:01,161 | INFO     | process IDs to be killed: [655415] (in reverse order)
[2025-11-22 11:38:33] 2025-11-22 16:38:01,340 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 11:38:33] 2025-11-22 16:38:01,341 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 11:38:33] 2025-11-22 16:38:01,351 | INFO     | did not find any defunct processes belonging to 655415
[2025-11-22 11:38:33] 2025-11-22 16:38:01,360 | INFO     | did not find any defunct processes belonging to 655415
[2025-11-22 11:38:33] 2025-11-22 16:38:01,363 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 11:38:33] 2025-11-22 16:38:01,363 | INFO     | ready for new job
[2025-11-22 11:38:33] 2025-11-22 16:38:01,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 11:38:33] 2025-11-22 16:38:01,368 | INFO     | ***************************************
[2025-11-22 11:38:33] 2025-11-22 16:38:01,369 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 11:38:33] 2025-11-22 16:38:01,369 | INFO     | ***************************************
[2025-11-22 11:38:33] 2025-11-22 16:38:01,369 | INFO     | 
[2025-11-22 11:38:33] 2025-11-22 16:38:01,372 | INFO     | architecture information:
[2025-11-22 11:38:33] 2025-11-22 16:38:01,372 | INFO     | executing command: cat /etc/os-release
[2025-11-22 11:38:33] 2025-11-22 16:38:01,403 | INFO     | cat /etc/os-release:
[2025-11-22 11:38:33] NAME="CentOS Linux"
[2025-11-22 11:38:33] VERSION="7 (Core)"
[2025-11-22 11:38:33] ID="centos"
[2025-11-22 11:38:33] ID_LIKE="rhel fedora"
[2025-11-22 11:38:33] VERSION_ID="7"
[2025-11-22 11:38:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 11:38:33] ANSI_COLOR="0;31"
[2025-11-22 11:38:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 11:38:33] HOME_URL="https://www.centos.org/"
[2025-11-22 11:38:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 11:38:33] 
[2025-11-22 11:38:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 11:38:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 11:38:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 11:38:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 11:38:33] 
[2025-11-22 11:38:33] 2025-11-22 16:38:01,404 | INFO     | ***************************************
[2025-11-22 11:38:33] 2025-11-22 16:38:01,908 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-22 11:38:33] 2025-11-22 16:38:01,962 | INFO     | sufficient remaining disk space (49031413760 B)
[2025-11-22 11:38:33] 2025-11-22 16:38:01,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 11:38:33] 2025-11-22 16:38:01,962 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 11:38:33] 2025-11-22 16:38:01,962 | INFO     | update_server=False
[2025-11-22 11:38:33] 2025-11-22 16:38:01,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 11:38:33] 2025-11-22 16:38:01,996 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 11:38:33] 2025-11-22 16:38:01,997 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 11:38:33] 2025-11-22 16:38:01,997 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:38:33] 2025-11-22 16:38:01,997 | INFO     | will abort loop
[2025-11-22 11:38:33] 2025-11-22 16:38:02,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 11:38:33] 2025-11-22 16:38:02,319 | INFO     | all data control threads have been joined
[2025-11-22 11:38:33] 2025-11-22 16:38:02,968 | INFO     | [job] retrieve thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,002 | INFO     | [job] job monitor thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,030 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,129 | INFO     | all payload control threads have been joined
[2025-11-22 11:38:33] 2025-11-22 16:38:03,190 | INFO     | [data] copytool_in thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,201 | INFO     | all job control threads have been joined
[2025-11-22 11:38:33] 2025-11-22 16:38:03,325 | INFO     | [data] control thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,480 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,481 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,842 | INFO     | [payload] failed_post thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,893 | INFO     | [job] validate thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:03,894 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:04,057 | INFO     | [payload] validate_post thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:04,137 | INFO     | [payload] control thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:04,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:38:33] 2025-11-22 16:38:04,207 | INFO     | [job] control thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:04,246 | INFO     | [data] copytool_out thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:04,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 11:38:33] 2025-11-22 16:38:05,182 | INFO     | [job] queue monitor thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:08,470 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 11:38:33] 2025-11-22 16:38:19,208 | INFO     | [monitor] cgroup control has ended
[2025-11-22 11:38:33] 2025-11-22 16:38:20,724 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140214832162624)>', '<ExcThread(monitor, started 140214475405056)>']
[2025-11-22 11:38:33] 2025-11-22 16:38:25,750 | INFO     | all workflow threads have been joined
[2025-11-22 11:38:33] 2025-11-22 16:38:25,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 11:38:33] 2025-11-22 16:38:25,751 | INFO     | traces error code: 0
[2025-11-22 11:38:33] 2025-11-22 16:38:25,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 11:38:33] 2025-11-22 16:38:31,899 | INFO     | PID=646852 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 11:38:33] 2025-11-22 16:38:31,900 | INFO     | .. there are 9 such processes running
[2025-11-22 11:38:33] 2025-11-22 16:38:31,900 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 11:38:33] 2025-11-22 16:38:31,900 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 11:38:33] 2025-11-22 16:38:31,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 11:38:33] 2025-11-22 16:38:31,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 11:38:33] 2025-11-22 16:38:31,902 | INFO     | [monitor] control thread has ended
[2025-11-22 11:38:33] 2025-11-22 16:38:32,108 [wrapper] ==== pilot stdout END ====
[2025-11-22 11:38:33] 2025-11-22 16:38:32,164 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 11:38:33] 2025-11-22 16:38:32,216 [wrapper] pilotpid: 646852
[2025-11-22 11:38:33] 2025-11-22 16:38:32,286 [wrapper] Pilot exit status: 0
[2025-11-22 11:38:33] 2025-11-22 16:38:32,452 [wrapper] pandaids: 6894267835
[2025-11-22 11:38:33] 2025-11-22 16:38:32,768 [wrapper] cleanup supervisor_pilot 2206069 646853
[2025-11-22 11:38:33] 2025-11-22 16:38:32,805 [wrapper] Test setup, not cleaning
[2025-11-22 11:38:33] 2025-11-22 16:38:32,849 [wrapper] apfmon messages muted
[2025-11-22 11:38:33] 2025-11-22 16:38:32,914 [wrapper] ==== wrapper stdout END ====
[2025-11-22 11:38:33] 2025-11-22 16:38:32,985 [wrapper] ==== wrapper stderr END ====
[2025-11-22 11:38:33]  *** Error codes and diagnostics ***
[2025-11-22 11:38:33]     "exeErrorCode": 0,
[2025-11-22 11:38:33]     "exeErrorDiag": "",
[2025-11-22 11:38:33]     "pilotErrorCode": 0,
[2025-11-22 11:38:33]     "pilotErrorDiag": "",
[2025-11-22 11:38:33]  *** Listing of results directory ***
[2025-11-22 11:38:33] total 1318916
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 00:09 pilot3.tar.gz
[2025-11-22 11:38:33] -rwx------. 1 boincer umatlas     36292 Nov 21 00:31 runpilot2-wrapper.sh
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 00:31 queuedata.json
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas       100 Nov 21 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 11:38:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 16:43 run_atlas
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas       105 Nov 21 16:43 job.xml
[2025-11-22 11:38:33] -rw-r--r--. 2 boincer umatlas 408891480 Nov 21 16:43 EVNT.47493127._002255.pool.root.1
[2025-11-22 11:38:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 16:43 start_atlas.sh
[2025-11-22 11:38:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 16:43 shared
[2025-11-22 11:38:33] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 16:43 input.tar.gz
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas         0 Nov 21 16:43 boinc_lockfile
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 16:43 pandaJob.out
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas        57 Nov 21 16:43 setup.sh.local
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas    989798 Nov 21 16:44 agis_schedconf.cvmfs.json
[2025-11-22 11:38:33] drwx------. 5 boincer umatlas      4096 Nov 21 16:44 pilot3
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas       533 Nov 22 11:17 boinc_task_state.xml
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas 914811058 Nov 22 11:33 HITS.47533967._002266.pool.root.1
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas      1053 Nov 22 11:37 memory_monitor_summary.json
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas   1526164 Nov 22 11:37 agis_ddmendpoints.agis.ALL.json
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas   2376852 Nov 22 11:37 log.47533967._002266.job.log.tgz.1
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas      6662 Nov 22 11:37 init_data.xml
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas        95 Nov 22 11:37 pilot_heartbeat.json
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas      8619 Nov 22 11:37 heartbeat.json
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas        29 Nov 22 11:38 wrapper_checkpoint.txt
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 11:38 boinc_mmap_file
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas       821 Nov 22 11:38 pilotlog.txt
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas   9095944 Nov 22 11:38 log.47533967._002266.job.log.1
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas       353 Nov 22 11:38 output.list
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas       620 Nov 22 11:38 runtime_log
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas  11489280 Nov 22 11:38 result.tar.gz
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas      9343 Nov 22 11:38 runtime_log.err
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas       660 Nov 22 11:38 jTSKDmOvYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA7IKDm3PicSo.diag
[2025-11-22 11:38:33] -rw-r--r--. 1 boincer umatlas     21181 Nov 22 11:38 stderr.txt
[2025-11-22 11:38:33] HITS file was successfully produced:
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas 914811058 Nov 22 11:33 shared/HITS.pool.root.1
[2025-11-22 11:38:33]  *** Contents of shared directory: ***
[2025-11-22 11:38:33] total 1304508
[2025-11-22 11:38:33] -rw-r--r--. 2 boincer umatlas 408891480 Nov 21 16:43 ATLAS.root_0
[2025-11-22 11:38:33] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 16:43 start_atlas.sh
[2025-11-22 11:38:33] -rw-r--r--. 2 boincer umatlas    590099 Nov 21 16:43 input.tar.gz
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas 914811058 Nov 22 11:33 HITS.pool.root.1
[2025-11-22 11:38:33] -rw-------. 1 boincer umatlas  11489280 Nov 22 11:38 result.tar.gz
11:38:35 (643004): run_atlas exited; CPU time 300016.539676
11:38:35 (643004): called boinc_finish(0)

</stderr_txt>
]]>

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