Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:08:43 (906094): wrapper (7.7.26015): starting
15:08:43 (906094): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 15:08:43] Arguments: --nthreads 3
[2025-11-24 15:08:43] Threads: 3
[2025-11-24 15:08:43] Checking for CVMFS
[2025-11-24 15:08:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 15:08:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 15:08:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 15:08:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 15:08:43] 2.9.2.0 3958803 8385 90648 153247 0 81 33293904 36864001 0 130560 0 3103566 99.913 458304 6541 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 15:08:43] CVMFS is ok
[2025-11-24 15:08:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 15:08:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 15:08:43] Further information can be found at the LHC@home message board.
[2025-11-24 15:08:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 15:08:43] Checking for apptainer binary...
[2025-11-24 15:08:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 15:08:43] Running /usr/bin/apptainer --version
[2025-11-24 15:08:43] apptainer version 1.4.1-1.1
[2025-11-24 15:08:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 15:08:44] atlasA223b
[2025-11-24 15:08:44] apptainer works
[2025-11-24 15:08:44] Set ATHENA_PROC_NUMBER=3
[2025-11-24 15:08:44] Set ATHENA_CORE_NUMBER=3
[2025-11-24 15:08:44] Starting ATLAS job with PandaID=6894267619
[2025-11-24 15:08:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:20:30]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:20:30] 2025-11-24 22:19:54,240 | INFO     | did not find any defunct processes belonging to 916277
[2025-11-24 23:20:30] 2025-11-24 22:19:54,241 | INFO     | did not find any defunct processes belonging to 916277
[2025-11-24 23:20:30] 2025-11-24 22:19:54,242 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:20:30] 2025-11-24 22:19:54,242 | INFO     | ready for new job
[2025-11-24 23:20:30] 2025-11-24 22:19:54,242 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:20:30] 2025-11-24 22:19:54,243 | INFO     | ***************************************
[2025-11-24 23:20:30] 2025-11-24 22:19:54,243 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:20:30] 2025-11-24 22:19:54,243 | INFO     | ***************************************
[2025-11-24 23:20:30] 2025-11-24 22:19:54,243 | INFO     | 
[2025-11-24 23:20:30] 2025-11-24 22:19:54,244 | INFO     | architecture information:
[2025-11-24 23:20:30] 2025-11-24 22:19:54,244 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:20:30] 2025-11-24 22:19:54,253 | INFO     | cat /etc/os-release:
[2025-11-24 23:20:30] NAME="CentOS Linux"
[2025-11-24 23:20:30] VERSION="7 (Core)"
[2025-11-24 23:20:30] ID="centos"
[2025-11-24 23:20:30] ID_LIKE="rhel fedora"
[2025-11-24 23:20:30] VERSION_ID="7"
[2025-11-24 23:20:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:20:30] ANSI_COLOR="0;31"
[2025-11-24 23:20:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:20:30] HOME_URL="https://www.centos.org/"
[2025-11-24 23:20:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:20:30] 
[2025-11-24 23:20:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:20:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:20:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:20:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:20:30] 
[2025-11-24 23:20:30] 2025-11-24 22:19:54,254 | INFO     | ***************************************
[2025-11-24 23:20:30] 2025-11-24 22:19:54,757 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 23:20:30] 2025-11-24 22:19:54,770 | INFO     | sufficient remaining disk space (368191733760 B)
[2025-11-24 23:20:30] 2025-11-24 22:19:54,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:20:30] 2025-11-24 22:19:54,771 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:20:30] 2025-11-24 22:19:54,771 | INFO     | update_server=False
[2025-11-24 23:20:30] 2025-11-24 22:19:54,771 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:20:30] 2025-11-24 22:19:54,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:20:30] 2025-11-24 22:19:54,957 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:20:30] 2025-11-24 22:19:55,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:20:30] 2025-11-24 22:19:55,225 | INFO     | aborting loop
[2025-11-24 23:20:30] 2025-11-24 22:19:55,444 | INFO     | all data control threads have been joined
[2025-11-24 23:20:30] 2025-11-24 22:19:55,776 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:55,777 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:55,825 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:55,825 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:55,844 | INFO     | all payload control threads have been joined
[2025-11-24 23:20:30] 2025-11-24 22:19:56,230 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:56,359 | INFO     | all job control threads have been joined
[2025-11-24 23:20:30] 2025-11-24 22:19:56,449 | INFO     | [data] control thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:56,454 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:56,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:20:30] 2025-11-24 22:19:56,523 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:56,849 | INFO     | [payload] control thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:56,963 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:57,096 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:57,126 | INFO     | [job] validate thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:57,226 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:57,243 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:19:57,365 | INFO     | [job] control thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:20:00,471 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:20:30] 2025-11-24 22:20:23,918 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:20:30] 2025-11-24 22:20:25,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659727189824)>', '<ExcThread(monitor, started 139659074053888)>']
[2025-11-24 23:20:30] 2025-11-24 22:20:25,751 | INFO     | PID=909815 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 23:20:30] 2025-11-24 22:20:25,751 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:20:30] 2025-11-24 22:20:25,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:20:30] 2025-11-24 22:20:25,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:20:30] 2025-11-24 22:20:25,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:20:30] 2025-11-24 22:20:25,751 | INFO     | [monitor] control thread has ended
[2025-11-24 23:20:30] 2025-11-24 22:20:30,173 | INFO     | all workflow threads have been joined
[2025-11-24 23:20:30] 2025-11-24 22:20:30,174 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:20:30] 2025-11-24 22:20:30,174 | INFO     | traces error code: 0
[2025-11-24 23:20:30] 2025-11-24 22:20:30,174 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:20:30] 2025-11-24 22:20:30,225 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:20:30] 2025-11-24 22:20:30,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:20:30] 2025-11-24 22:20:30,230 [wrapper] pilotpid: 909815
[2025-11-24 23:20:30] 2025-11-24 22:20:30,233 [wrapper] Pilot exit status: 0
[2025-11-24 23:20:30] 2025-11-24 22:20:30,241 [wrapper] pandaids: 6894267619
[2025-11-24 23:20:30] 2025-11-24 22:20:30,261 [wrapper] cleanup supervisor_pilot  985135 909816
[2025-11-24 23:20:30] 2025-11-24 22:20:30,263 [wrapper] Test setup, not cleaning
[2025-11-24 23:20:30] 2025-11-24 22:20:30,266 [wrapper] apfmon messages muted
[2025-11-24 23:20:30] 2025-11-24 22:20:30,269 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:20:30] 2025-11-24 22:20:30,271 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:20:30]  *** Error codes and diagnostics ***
[2025-11-24 23:20:30]     "exeErrorCode": 0,
[2025-11-24 23:20:30]     "exeErrorDiag": "",
[2025-11-24 23:20:30]     "pilotErrorCode": 0,
[2025-11-24 23:20:30]     "pilotErrorDiag": "",
[2025-11-24 23:20:30]  *** Listing of results directory ***
[2025-11-24 23:20:30] total 1308000
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc    576529 Nov 21 06:09 pilot3.tar.gz
[2025-11-24 23:20:30] -rwx------ 1 boinc boinc     36292 Nov 21 06:22 runpilot2-wrapper.sh
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc      5112 Nov 21 06:22 queuedata.json
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc       100 Nov 24 15:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:20:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 15:08 run_atlas
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc       105 Nov 24 15:08 job.xml
[2025-11-24 23:20:30] -rw-r--r-- 2 boinc boinc 409672287 Nov 24 15:08 EVNT.47493127._002242.pool.root.1
[2025-11-24 23:20:30] -rw-r--r-- 2 boinc boinc    590100 Nov 24 15:08 input.tar.gz
[2025-11-24 23:20:30] -rw-r--r-- 2 boinc boinc     15847 Nov 24 15:08 start_atlas.sh
[2025-11-24 23:20:30] drwxrwx--x 2 boinc boinc      4096 Nov 24 15:08 shared
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc         0 Nov 24 15:08 boinc_setup_complete
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc      6449 Nov 24 15:08 init_data.xml
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc         0 Nov 24 15:08 boinc_lockfile
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc      2786 Nov 24 15:08 pandaJob.out
[2025-11-24 23:20:30] -rw------- 1 boinc boinc    988280 Nov 24 15:08 agis_schedconf.cvmfs.json
[2025-11-24 23:20:30] drwx------ 5 boinc boinc      4096 Nov 24 15:08 pilot3
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc       532 Nov 24 23:17 boinc_task_state.xml
[2025-11-24 23:20:30] -rw------- 1 boinc boinc 915182642 Nov 24 23:19 HITS.47533967._002139.pool.root.1
[2025-11-24 23:20:30] -rw------- 1 boinc boinc        95 Nov 24 23:19 pilot_heartbeat.json
[2025-11-24 23:20:30] -rw------- 1 boinc boinc      1022 Nov 24 23:19 memory_monitor_summary.json
[2025-11-24 23:20:30] -rw------- 1 boinc boinc   1516227 Nov 24 23:19 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:20:30] -rw------- 1 boinc boinc   1178365 Nov 24 23:19 log.47533967._002139.job.log.tgz.1
[2025-11-24 23:20:30] -rw------- 1 boinc boinc      8566 Nov 24 23:19 heartbeat.json
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc      8192 Nov 24 23:20 boinc_mmap_file
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc        28 Nov 24 23:20 wrapper_checkpoint.txt
[2025-11-24 23:20:30] -rw------- 1 boinc boinc      4751 Nov 24 23:20 pilotlog.txt
[2025-11-24 23:20:30] -rw------- 1 boinc boinc   4137675 Nov 24 23:20 log.47533967._002139.job.log.1
[2025-11-24 23:20:30] -rw------- 1 boinc boinc       353 Nov 24 23:20 output.list
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc       620 Nov 24 23:20 runtime_log
[2025-11-24 23:20:30] -rw------- 1 boinc boinc   5335040 Nov 24 23:20 result.tar.gz
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc      8918 Nov 24 23:20 runtime_log.err
[2025-11-24 23:20:30] -rw------- 1 boinc boinc       670 Nov 24 23:20 VJxMDmVmYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmI6IKDmvHLJTn.diag
[2025-11-24 23:20:30] -rw-r--r-- 1 boinc boinc      9977 Nov 24 23:20 stderr.txt
[2025-11-24 23:20:30] HITS file was successfully produced:
[2025-11-24 23:20:30] -rw------- 1 boinc boinc 915182642 Nov 24 23:19 shared/HITS.pool.root.1
[2025-11-24 23:20:30]  *** Contents of shared directory: ***
[2025-11-24 23:20:30] total 1299624
[2025-11-24 23:20:30] -rw-r--r-- 2 boinc boinc 409672287 Nov 24 15:08 ATLAS.root_0
[2025-11-24 23:20:30] -rw-r--r-- 2 boinc boinc    590100 Nov 24 15:08 input.tar.gz
[2025-11-24 23:20:30] -rw-r--r-- 2 boinc boinc     15847 Nov 24 15:08 start_atlas.sh
[2025-11-24 23:20:30] -rw------- 1 boinc boinc 915182642 Nov 24 23:19 HITS.pool.root.1
[2025-11-24 23:20:30] -rw------- 1 boinc boinc   5335040 Nov 24 23:20 result.tar.gz
23:20:32 (906094): run_atlas exited; CPU time 87150.027911
23:20:32 (906094): called boinc_finish(0)

</stderr_txt>
]]>

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