Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:20:41 (885547): wrapper (7.7.26015): starting
08:20:41 (885547): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 08:20:41] Arguments: --nthreads 4
[2025-11-27 08:20:41] Threads: 4
[2025-11-27 08:20:41] Checking for CVMFS
[2025-11-27 08:20:41] No cvmfs_config command found, will try listing directly
[2025-11-27 08:20:41] CVMFS is ok
[2025-11-27 08:20:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:20:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:20:41] Further information can be found at the LHC@home message board.
[2025-11-27 08:20:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:20:41] Checking for apptainer binary...
[2025-11-27 08:20:41] which: no apptainer in ((null))
[2025-11-27 08:20:41] apptainer is not installed, using version from CVMFS
[2025-11-27 08:20:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:20:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-11-27 08:20:41] apptainer works
[2025-11-27 08:20:41] Set ATHENA_PROC_NUMBER=4
[2025-11-27 08:20:41] Set ATHENA_CORE_NUMBER=4
[2025-11-27 08:20:41] Starting ATLAS job with PandaID=6891104788
[2025-11-27 08:20:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 01:39:04]  *** The last 200 lines of the pilot log: ***
[2025-11-28 01:39:04] 2025-11-28 00:36:30,685 | INFO     | PID=889315 has CPU usage=22.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 01:39:04] 2025-11-28 00:36:30,685 | INFO     | .. there are 4 such processes running
[2025-11-28 01:39:04] 2025-11-28 00:36:31,589 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 01:39:04] 2025-11-28 00:36:31,598 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2555.59871875
[2025-11-28 01:39:04] 2025-11-28 00:36:31,610 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6891104788/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,611 | INFO     | extracted standard info from prmon json
[2025-11-28 01:39:04] 2025-11-28 00:36:31,611 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 01:39:04] 2025-11-28 00:36:31,611 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 01:39:04] 2025-11-28 00:36:31,628 | INFO     | fitting pss+swap vs Time
[2025-11-28 01:39:04] 2025-11-28 00:36:31,629 | INFO     | sum of square deviations: 328096070838.9519
[2025-11-28 01:39:04] 2025-11-28 00:36:31,655 | INFO     | sum of deviations: 819739273542.3043
[2025-11-28 01:39:04] 2025-11-28 00:36:31,656 | INFO     | mean x: 1764259129.0068696
[2025-11-28 01:39:04] 2025-11-28 00:36:31,656 | INFO     | mean y: 2293637.8135426887
[2025-11-28 01:39:04] 2025-11-28 00:36:31,656 | INFO     | intersect: -4405660694.142973
[2025-11-28 01:39:04] 2025-11-28 00:36:31,658 | INFO     | chi2: 4.623437822774492
[2025-11-28 01:39:04] 2025-11-28 00:36:31,659 | INFO     | sum of square deviations: 323290057281.45166
[2025-11-28 01:39:04] 2025-11-28 00:36:31,685 | INFO     | sum of deviations: 1072209653440.7411
[2025-11-28 01:39:04] 2025-11-28 00:36:31,685 | INFO     | mean x: 1764258976.5069034
[2025-11-28 01:39:04] 2025-11-28 00:36:31,685 | INFO     | mean y: 2301647.4654832347
[2025-11-28 01:39:04] 2025-11-28 00:36:31,685 | INFO     | intersect: -5848962451.675479
[2025-11-28 01:39:04] 2025-11-28 00:36:31,687 | INFO     | chi2: 1.9478699186990704
[2025-11-28 01:39:04] 2025-11-28 00:36:31,687 | INFO     | time since job start (62139s) is within the limit (172800.0s)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,687 | INFO     | current chi2=1.9478699186990704 (change=57.869663368152146 %)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,689 | INFO     | sum of square deviations: 318531207398.9514
[2025-11-28 01:39:04] 2025-11-28 00:36:31,710 | INFO     | sum of deviations: 1126643433375.9392
[2025-11-28 01:39:04] 2025-11-28 00:36:31,711 | INFO     | mean x: 1764258824.0069375
[2025-11-28 01:39:04] 2025-11-28 00:36:31,711 | INFO     | mean y: 2303389.2943508425
[2025-11-28 01:39:04] 2025-11-28 00:36:31,711 | INFO     | intersect: -6237872055.598388
[2025-11-28 01:39:04] 2025-11-28 00:36:31,712 | INFO     | chi2: 1.7322044372986345
[2025-11-28 01:39:04] 2025-11-28 00:36:31,712 | INFO     | current chi2=1.7322044372986345 (change=11.071862619269417 %)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,712 | INFO     | right removable region: 1008
[2025-11-28 01:39:04] 2025-11-28 00:36:31,714 | INFO     | sum of square deviations: 323290053011.4517
[2025-11-28 01:39:04] 2025-11-28 00:36:31,735 | INFO     | sum of deviations: 645614719257.5636
[2025-11-28 01:39:04] 2025-11-28 00:36:31,735 | INFO     | mean x: 1764259281.5069034
[2025-11-28 01:39:04] 2025-11-28 00:36:31,735 | INFO     | mean y: 2299153.205128205
[2025-11-28 01:39:04] 2025-11-28 00:36:31,736 | INFO     | intersect: -3520951098.7513804
[2025-11-28 01:39:04] 2025-11-28 00:36:31,737 | INFO     | chi2: 2.986350655409284
[2025-11-28 01:39:04] 2025-11-28 00:36:31,737 | INFO     | current chi2=2.986350655409284 (change=35.40843913377868 %)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,738 | INFO     | sum of square deviations: 318531198858.95135
[2025-11-28 01:39:04] 2025-11-28 00:36:31,760 | INFO     | sum of deviations: 635972362552.5958
[2025-11-28 01:39:04] 2025-11-28 00:36:31,761 | INFO     | mean x: 1764259434.0069375
[2025-11-28 01:39:04] 2025-11-28 00:36:31,761 | INFO     | mean y: 2299461.629335976
[2025-11-28 01:39:04] 2025-11-28 00:36:31,761 | INFO     | intersect: -3520181992.056897
[2025-11-28 01:39:04] 2025-11-28 00:36:31,762 | INFO     | chi2: 2.9846414508937706
[2025-11-28 01:39:04] 2025-11-28 00:36:31,763 | INFO     | current chi2=2.9846414508937706 (change=0.057233885525714484 %)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,763 | INFO     | left removable region: 20
[2025-11-28 01:39:04] 2025-11-28 00:36:31,764 | INFO     | sum of square deviations: 299053799672.9504
[2025-11-28 01:39:04] 2025-11-28 00:36:31,786 | INFO     | sum of deviations: 915047339589.3934
[2025-11-28 01:39:04] 2025-11-28 00:36:31,786 | INFO     | mean x: 1764259403.507085
[2025-11-28 01:39:04] 2025-11-28 00:36:31,786 | INFO     | mean y: 2310044.6578947366
[2025-11-28 01:39:04] 2025-11-28 00:36:31,786 | INFO     | intersect: -5395985764.6253805
[2025-11-28 01:39:04] 2025-11-28 00:36:31,788 | INFO     | chi2: 0.06411209375590605
[2025-11-28 01:39:04] 2025-11-28 00:36:31,788 | INFO     | current memory leak: 3.06 B/s (using 988 data points, chi2=0.06)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,789 | INFO     | could have reported an average CPU frequency of 2603 MHz (38 samples)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,789 | INFO     | ..............................
[2025-11-28 01:39:04] 2025-11-28 00:36:31,789 | INFO     | . Timing measurements:
[2025-11-28 01:39:04] 2025-11-28 00:36:31,789 | INFO     | . get job = 0 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,789 | INFO     | . initial setup = 1 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,790 | INFO     | . payload setup = 6 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,790 | INFO     | . stage-in = 0 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,790 | INFO     | . payload execution = 62103 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,790 | INFO     | . stage-out = 3 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,790 | INFO     | . log creation = 0 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,790 | INFO     | ..............................
[2025-11-28 01:39:04] 2025-11-28 00:36:31,894 | INFO     | 
[2025-11-28 01:39:04] 2025-11-28 00:36:31,894 | INFO     | job summary report
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | --------------------------------------------------
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | PanDA job id: 6891104788
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | task id: 47483661
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | errors: (none)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | pilot state: finished 
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | transexitcode: 0
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | exeerrorcode: 0
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | exeerrordiag: 
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | exitcode: 0
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | exitmsg: OK
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | cpuconsumptiontime: 245670 s
[2025-11-28 01:39:04] 2025-11-28 00:36:31,895 | INFO     | nevents: 1000
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | neventsw: 0
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | pid: 896257
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | pgrp: 896257
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | corecount: 4
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | event service: False
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | sizes: {0: 2284309, 5: 2284571, 11: 2284627, 62114: 2337542, 62115: 2337541, 62118: 2346641, 62119: 2346825, 62124: 2347071}
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | --------------------------------------------------
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | 
[2025-11-28 01:39:04] 2025-11-28 00:36:31,896 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-11-28 01:39:04] 2025-11-28 00:36:31,916 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 01:39:04] 2025-11-28 00:36:31,918 | INFO     | job 6891104788 has completed (purged errors)
[2025-11-28 01:39:04] 2025-11-28 00:36:31,919 | INFO     | overall cleanup function is called
[2025-11-28 01:39:04] 2025-11-28 00:36:32,931 | INFO     | --- collectZombieJob: --- 10, [896257]
[2025-11-28 01:39:04] 2025-11-28 00:36:32,931 | INFO     | zombie collector waiting for pid 896257
[2025-11-28 01:39:04] 2025-11-28 00:36:32,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 01:39:04] 2025-11-28 00:36:32,931 | INFO     | collected zombie processes
[2025-11-28 01:39:04] 2025-11-28 00:36:32,931 | INFO     | will attempt to kill all subprocesses of pid=896257
[2025-11-28 01:39:04] 2025-11-28 00:36:33,358 | INFO     | process IDs to be killed: [896257] (in reverse order)
[2025-11-28 01:39:04] 2025-11-28 00:36:33,483 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 01:39:04] 2025-11-28 00:36:33,484 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 01:39:04] 2025-11-28 00:36:33,499 | INFO     | did not find any defunct processes belonging to 896257
[2025-11-28 01:39:04] 2025-11-28 00:36:33,514 | INFO     | did not find any defunct processes belonging to 896257
[2025-11-28 01:39:04] 2025-11-28 00:36:33,516 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 01:39:04] 2025-11-28 00:36:33,516 | INFO     | ready for new job
[2025-11-28 01:39:04] 2025-11-28 00:36:33,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 01:39:04] 2025-11-28 00:36:33,521 | INFO     | ***************************************
[2025-11-28 01:39:04] 2025-11-28 00:36:33,522 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 01:39:04] 2025-11-28 00:36:33,522 | INFO     | ***************************************
[2025-11-28 01:39:04] 2025-11-28 00:36:33,522 | INFO     | 
[2025-11-28 01:39:04] 2025-11-28 00:36:33,526 | INFO     | architecture information:
[2025-11-28 01:39:04] 2025-11-28 00:36:33,526 | INFO     | executing command: cat /etc/os-release
[2025-11-28 01:39:04] 2025-11-28 00:36:33,540 | INFO     | cat /etc/os-release:
[2025-11-28 01:39:04] NAME="CentOS Linux"
[2025-11-28 01:39:04] VERSION="7 (Core)"
[2025-11-28 01:39:04] ID="centos"
[2025-11-28 01:39:04] ID_LIKE="rhel fedora"
[2025-11-28 01:39:04] VERSION_ID="7"
[2025-11-28 01:39:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 01:39:04] ANSI_COLOR="0;31"
[2025-11-28 01:39:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 01:39:04] HOME_URL="https://www.centos.org/"
[2025-11-28 01:39:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 01:39:04] 
[2025-11-28 01:39:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 01:39:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 01:39:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 01:39:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 01:39:04] 
[2025-11-28 01:39:04] 2025-11-28 00:36:33,541 | INFO     | ***************************************
[2025-11-28 01:39:04] 2025-11-28 00:36:34,043 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-11-28 01:39:04] 2025-11-28 00:36:34,058 | INFO     | sufficient remaining disk space (654658502656 B)
[2025-11-28 01:39:04] 2025-11-28 00:36:34,059 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 01:39:04] 2025-11-28 00:36:34,059 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 01:39:04] 2025-11-28 00:36:34,059 | INFO     | update_server=False
[2025-11-28 01:39:04] 2025-11-28 00:36:34,059 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 01:39:04] 2025-11-28 00:36:34,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:39:04] 2025-11-28 00:36:34,060 | INFO     | aborting loop
[2025-11-28 01:39:04] 2025-11-28 00:36:34,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 01:39:04] 2025-11-28 00:36:34,516 | INFO     | all data control threads have been joined
[2025-11-28 01:39:04] 2025-11-28 00:36:34,799 | INFO     | all payload control threads have been joined
[2025-11-28 01:39:04] 2025-11-28 00:36:35,062 | INFO     | [job] job monitor thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,064 | INFO     | [job] retrieve thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,071 | INFO     | [payload] validate_post thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,326 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,344 | INFO     | [data] copytool_in thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,409 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,521 | INFO     | [data] control thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,720 | INFO     | all job control threads have been joined
[2025-11-28 01:39:04] 2025-11-28 00:36:35,793 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:35,805 | INFO     | [payload] control thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:36,061 | INFO     | [job] validate thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:36,267 | INFO     | [payload] failed_post thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:36,314 | INFO     | [data] copytool_out thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:36,501 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:36,725 | INFO     | [job] control thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:36,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 01:39:04] 2025-11-28 00:36:37,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 01:39:04] 2025-11-28 00:36:37,909 | INFO     | [job] queue monitor thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:36:41,431 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 01:39:04] 2025-11-28 00:37:05,341 | INFO     | PID=889315 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 01:39:04] 2025-11-28 00:37:05,341 | INFO     | .. there are 4 such processes running
[2025-11-28 01:39:04] 2025-11-28 00:37:05,342 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 01:39:04] 2025-11-28 00:37:05,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 01:39:04] 2025-11-28 00:37:05,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 01:39:04] 2025-11-28 00:37:33,142 | INFO     | [monitor] cgroup control has ended
[2025-11-28 01:39:04] 2025-11-28 00:37:35,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22496450631488)>', '<ExcThread(monitor, started 22496203978496)>']
[2025-11-28 01:39:04] 2025-11-28 00:37:35,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 01:39:04] 2025-11-28 00:37:35,490 | INFO     | [monitor] control thread has ended
[2025-11-28 01:39:04] 2025-11-28 00:37:40,264 | INFO     | all workflow threads have been joined
[2025-11-28 01:39:04] 2025-11-28 00:37:40,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 01:39:04] 2025-11-28 00:37:40,265 | INFO     | traces error code: 0
[2025-11-28 01:39:04] 2025-11-28 00:37:40,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 01:39:04] 2025-11-28 00:37:40,481 [wrapper] ==== pilot stdout END ====
[2025-11-28 01:39:04] 2025-11-28 00:37:40,486 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 01:39:04] 2025-11-28 00:37:40,490 [wrapper] pilotpid: 889315
[2025-11-28 01:39:04] 2025-11-28 00:37:40,493 [wrapper] Pilot exit status: 0
[2025-11-28 01:39:04] 2025-11-28 00:37:40,509 [wrapper] pandaids: 6891104788
[2025-11-28 01:39:04] 2025-11-28 00:37:40,590 [wrapper] cleanup supervisor_pilot 1690056 889316
[2025-11-28 01:39:04] 2025-11-28 00:37:40,594 [wrapper] Test setup, not cleaning
[2025-11-28 01:39:04] 2025-11-28 00:37:40,598 [wrapper] apfmon messages muted
[2025-11-28 01:39:04] 2025-11-28 00:37:40,602 [wrapper] ==== wrapper stdout END ====
[2025-11-28 01:39:04] 2025-11-28 00:37:40,605 [wrapper] ==== wrapper stderr END ====
[2025-11-28 01:39:04]  *** Error codes and diagnostics ***
[2025-11-28 01:39:04]     "exeErrorCode": 0,
[2025-11-28 01:39:04]     "exeErrorDiag": "",
[2025-11-28 01:39:04]     "pilotErrorCode": 0,
[2025-11-28 01:39:04]     "pilotErrorDiag": "",
[2025-11-28 01:39:04]  *** Listing of results directory ***
[2025-11-28 01:39:04] total 1327936
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc    576529 Nov 18 07:54 pilot3.tar.gz
[2025-11-28 01:39:04] -rwx------ 1 boinc boinc     36292 Nov 18 07:56 runpilot2-wrapper.sh
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc      5112 Nov 18 07:56 queuedata.json
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc       100 Nov 27 08:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 01:39:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 08:20 run_atlas
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc       105 Nov 27 08:20 job.xml
[2025-11-28 01:39:04] -rw-r--r-- 2 boinc boinc 409392230 Nov 27 08:20 EVNT.47483658._000228.pool.root.1
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc      6635 Nov 27 08:20 init_data.xml
[2025-11-28 01:39:04] -rw-r--r-- 2 boinc boinc     15120 Nov 27 08:20 start_atlas.sh
[2025-11-28 01:39:04] drwxrwx--x 2 boinc boinc      4096 Nov 27 08:20 shared
[2025-11-28 01:39:04] -rw-r--r-- 2 boinc boinc    590104 Nov 27 08:20 input.tar.gz
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc         0 Nov 27 08:20 boinc_lockfile
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc      2770 Nov 27 08:20 pandaJob.out
[2025-11-28 01:39:04] -rw------- 1 boinc boinc    991570 Nov 27 08:20 agis_schedconf.cvmfs.json
[2025-11-28 01:39:04] drwx------ 5 boinc boinc      4096 Nov 27 08:20 pilot3
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc       532 Nov 28 01:27 boinc_task_state.xml
[2025-11-28 01:39:04] -rw------- 1 boinc boinc 925603810 Nov 28 01:35 HITS.47483661._001971.pool.root.1
[2025-11-28 01:39:04] -rw------- 1 boinc boinc      1046 Nov 28 01:36 memory_monitor_summary.json
[2025-11-28 01:39:04] -rw------- 1 boinc boinc   1516240 Nov 28 01:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 01:39:04] -rw------- 1 boinc boinc   1756923 Nov 28 01:36 log.47483661._001971.job.log.tgz.1
[2025-11-28 01:39:04] -rw------- 1 boinc boinc      8632 Nov 28 01:36 heartbeat.json
[2025-11-28 01:39:04] -rw------- 1 boinc boinc        95 Nov 28 01:37 pilot_heartbeat.json
[2025-11-28 01:39:04] -rw------- 1 boinc boinc      4832 Nov 28 01:37 pilotlog.txt
[2025-11-28 01:39:04] -rw------- 1 boinc boinc   8689378 Nov 28 01:37 log.47483661._001971.job.log.1
[2025-11-28 01:39:04] -rw------- 1 boinc boinc       353 Nov 28 01:37 output.list
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc       620 Nov 28 01:37 runtime_log
[2025-11-28 01:39:04] -rw------- 1 boinc boinc  10465280 Nov 28 01:37 result.tar.gz
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc      9070 Nov 28 01:37 runtime_log.err
[2025-11-28 01:39:04] -rw------- 1 boinc boinc       670 Nov 28 01:37 LoLODmLoUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmT6qMDmz2eDSm.diag
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc        28 Nov 28 01:39 wrapper_checkpoint.txt
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc      8192 Nov 28 01:39 boinc_mmap_file
[2025-11-28 01:39:04] -rw-r--r-- 1 boinc boinc     21179 Nov 28 01:39 stderr.txt
[2025-11-28 01:39:04] HITS file was successfully produced:
[2025-11-28 01:39:04] -rw------- 1 boinc boinc 925603810 Nov 28 01:35 shared/HITS.pool.root.1
[2025-11-28 01:39:04]  *** Contents of shared directory: ***
[2025-11-28 01:39:04] total 1314536
[2025-11-28 01:39:04] -rw-r--r-- 2 boinc boinc 409392230 Nov 27 08:20 ATLAS.root_0
[2025-11-28 01:39:04] -rw-r--r-- 2 boinc boinc     15120 Nov 27 08:20 start_atlas.sh
[2025-11-28 01:39:04] -rw-r--r-- 2 boinc boinc    590104 Nov 27 08:20 input.tar.gz
[2025-11-28 01:39:04] -rw------- 1 boinc boinc 925603810 Nov 28 01:35 HITS.pool.root.1
[2025-11-28 01:39:04] -rw------- 1 boinc boinc  10465280 Nov 28 01:37 result.tar.gz
01:39:06 (885547): run_atlas exited; CPU time 247972.109944
01:39:06 (885547): called boinc_finish(0)

</stderr_txt>
]]>

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