Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
22:47:19 (1622313): wrapper (7.7.26015): starting
22:47:19 (1622313): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 22:47:19] Arguments: --nthreads 12
[2025-11-25 22:47:19] Threads: 12
[2025-11-25 22:47:19] Checking for CVMFS
[2025-11-25 22:47:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:47:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:47:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:47:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:47:23] 2.13.0.0 2291514 10150 170176 153300 3 89 2417756 4096000 16925 130560 0 60965683 99.987 1023575 620 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-25 22:47:23] CVMFS is ok
[2025-11-25 22:47:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:47:23] Checking for apptainer binary...
[2025-11-25 22:47:23] apptainer is not installed, using version from CVMFS
[2025-11-25 22:47:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:47:57] epyc7v12
[2025-11-25 22:47:57] apptainer works
[2025-11-25 22:47:57] Set ATHENA_PROC_NUMBER=12
[2025-11-25 22:47:57] Set ATHENA_CORE_NUMBER=12
[2025-11-25 22:47:58] Starting ATLAS job with PandaID=6893873727
[2025-11-25 22:47:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31420/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:18:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:18:42] 2025-11-26 11:17:38,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:42] 2025-11-26 11:17:39,171 | INFO     | time since job start (44663s) is within the limit (172800.0s)
[2025-11-26 11:18:42] 2025-11-26 11:17:41,183 | INFO     | time since job start (44665s) is within the limit (172800.0s)
[2025-11-26 11:18:42] 2025-11-26 11:17:41,423 | INFO     | monitor loop #2724: job 0:6893873727 is in state 'finished'
[2025-11-26 11:18:42] 2025-11-26 11:17:41,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:42] 2025-11-26 11:17:43,191 | INFO     | time since job start (44667s) is within the limit (172800.0s)
[2025-11-26 11:18:42] 2025-11-26 11:17:43,935 | INFO     | monitor loop #2725: job 0:6893873727 is in state 'finished'
[2025-11-26 11:18:42] 2025-11-26 11:17:43,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:42] 2025-11-26 11:17:45,199 | INFO     | time since job start (44669s) is within the limit (172800.0s)
[2025-11-26 11:18:42] 2025-11-26 11:17:46,447 | INFO     | monitor loop #2726: job 0:6893873727 is in state 'finished'
[2025-11-26 11:18:42] 2025-11-26 11:17:46,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:42] 2025-11-26 11:17:47,958 | INFO     | PID=1638715 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 11:18:42] 2025-11-26 11:17:47,958 | INFO     | .. there are 20 such processes running
[2025-11-26 11:18:42] 2025-11-26 11:17:48,959 | INFO     | time since job start (44672s) is within the limit (172800.0s)
[2025-11-26 11:18:42] 2025-11-26 11:17:48,969 | INFO     | monitor loop #2727: job 0:6893873727 is in state 'finished'
[2025-11-26 11:18:42] 2025-11-26 11:17:48,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:18:42] 2025-11-26 11:17:49,255 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 11:18:42] 2025-11-26 11:17:49,327 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2400.3288203125
[2025-11-26 11:18:42] 2025-11-26 11:17:49,383 | INFO     | using path: /opt/boinc/instance_homes/boinc_31420/slots/0/PanDA_Pilot-6893873727/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:18:42] 2025-11-26 11:17:49,384 | INFO     | extracted standard info from prmon json
[2025-11-26 11:18:42] 2025-11-26 11:17:49,384 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:18:42] 2025-11-26 11:17:49,384 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:18:42] 2025-11-26 11:17:49,401 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:18:42] 2025-11-26 11:17:49,402 | INFO     | sum of square deviations: 115258248364.99315
[2025-11-26 11:18:42] 2025-11-26 11:17:49,423 | INFO     | sum of deviations: 815149829667.9045
[2025-11-26 11:18:42] 2025-11-26 11:17:49,424 | INFO     | mean x: 1764133790.9165509
[2025-11-26 11:18:42] 2025-11-26 11:17:49,424 | INFO     | mean y: 3147580.8650904032
[2025-11-26 11:18:42] 2025-11-26 11:17:49,424 | INFO     | intersect: -12473472353.728573
[2025-11-26 11:18:42] 2025-11-26 11:17:49,425 | INFO     | chi2: 66.98499682152753
[2025-11-26 11:18:42] 2025-11-26 11:17:49,426 | INFO     | sum of square deviations: 112870837818.99838
[2025-11-26 11:18:42] 2025-11-26 11:17:49,456 | INFO     | sum of deviations: 1087930501113.6687
[2025-11-26 11:18:42] 2025-11-26 11:17:49,456 | INFO     | mean x: 1764133638.429972
[2025-11-26 11:18:42] 2025-11-26 11:17:49,457 | INFO     | mean y: 3164999.043417367
[2025-11-26 11:18:42] 2025-11-26 11:17:49,457 | INFO     | intersect: -17000826734.998188
[2025-11-26 11:18:42] 2025-11-26 11:17:49,457 | INFO     | chi2: 62.81856217580658
[2025-11-26 11:18:42] 2025-11-26 11:17:49,458 | INFO     | current chi2=62.81856217580658 (change=6.219951994357556 %)
[2025-11-26 11:18:42] 2025-11-26 11:17:49,458 | INFO     | right removable region: 713
[2025-11-26 11:18:42] 2025-11-26 11:17:49,463 | INFO     | sum of square deviations: 112869997238.9986
[2025-11-26 11:18:42] 2025-11-26 11:17:49,498 | INFO     | sum of deviations: 470881933068.44946
[2025-11-26 11:18:42] 2025-11-26 11:17:49,515 | INFO     | mean x: 1764133943.429972
[2025-11-26 11:18:42] 2025-11-26 11:17:49,515 | INFO     | mean y: 3169565.9789915965
[2025-11-26 11:18:42] 2025-11-26 11:17:49,515 | INFO     | intersect: -7356614449.209684
[2025-11-26 11:18:42] 2025-11-26 11:17:49,516 | INFO     | chi2: 61.468290973846464
[2025-11-26 11:18:42] 2025-11-26 11:17:49,516 | INFO     | current chi2=61.468290973846464 (change=8.235733536540405 %)
[2025-11-26 11:18:42] 2025-11-26 11:17:49,516 | INFO     | left removable region: 10
[2025-11-26 11:18:42] 2025-11-26 11:17:49,517 | INFO     | sum of square deviations: 107733424944.88472
[2025-11-26 11:18:42] 2025-11-26 11:17:49,560 | INFO     | sum of deviations: 469978560861.6199
[2025-11-26 11:18:42] 2025-11-26 11:17:49,560 | INFO     | mean x: 1764133912.9601707
[2025-11-26 11:18:42] 2025-11-26 11:17:49,560 | INFO     | mean y: 3212801.1650071125
[2025-11-26 11:18:42] 2025-11-26 11:17:49,560 | INFO     | intersect: -7692682117.281712
[2025-11-26 11:18:42] 2025-11-26 11:17:49,561 | INFO     | chi2: 51.39784498606164
[2025-11-26 11:18:42] 2025-11-26 11:17:49,561 | INFO     | current memory leak: 4.36 B/s (using 703 data points, chi2=51.40)
[2025-11-26 11:18:42] 2025-11-26 11:17:49,562 | INFO     | could have reported an average CPU frequency of 2398 MHz (26 samples)
[2025-11-26 11:18:42] 2025-11-26 11:17:49,562 | INFO     | ..............................
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . Timing measurements:
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . get job = 0 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . initial setup = 10 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . payload setup = 194 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . stage-in = 0 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . payload execution = 44012 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . stage-out = 8 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | . log creation = 2 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,567 | INFO     | ..............................
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | 
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | job summary report
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | --------------------------------------------------
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | PanDA job id: 6893873727
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | task id: 47523449
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | errors: (none)
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:18:42] 2025-11-26 11:17:49,831 | INFO     | pilot state: finished 
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | transexitcode: 0
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | exeerrorcode: 0
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | exeerrordiag: 
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | exitcode: 0
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | exitmsg: OK
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | cpuconsumptiontime: 264294 s
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | nevents: 1000
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | neventsw: 0
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | pid: 1670723
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | pgrp: 1670723
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | corecount: 12
[2025-11-26 11:18:42] 2025-11-26 11:17:49,832 | INFO     | event service: False
[2025-11-26 11:18:42] 2025-11-26 11:17:49,833 | INFO     | sizes: {0: 2283486, 1: 2284365, 12: 2284365, 23: 2284393, 34: 2284421, 45: 2284449, 55: 2284605, 66: 2284633, 77: 2284661, 88: 2284717, 98: 2284745, 109: 2285053, 
[2025-11-26 11:18:42] 2025-11-26 11:17:49,833 | INFO     | --------------------------------------------------
[2025-11-26 11:18:42] 2025-11-26 11:17:49,833 | INFO     | 
[2025-11-26 11:18:42] 2025-11-26 11:17:49,833 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31420/slots/0
[2025-11-26 11:18:42] 2025-11-26 11:17:50,967 | INFO     | time since job start (44674s) is within the limit (172800.0s)
[2025-11-26 11:18:42] 2025-11-26 11:17:51,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:18:42] 2025-11-26 11:17:51,029 | INFO     | job 6893873727 has completed (purged errors)
[2025-11-26 11:18:42] 2025-11-26 11:17:51,030 | INFO     | overall cleanup function is called
[2025-11-26 11:18:42] 2025-11-26 11:17:52,079 | INFO     | --- collectZombieJob: --- 10, [1670723]
[2025-11-26 11:18:42] 2025-11-26 11:17:52,079 | INFO     | zombie collector waiting for pid 1670723
[2025-11-26 11:18:42] 2025-11-26 11:17:52,079 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:18:42] 2025-11-26 11:17:52,079 | INFO     | collected zombie processes
[2025-11-26 11:18:42] 2025-11-26 11:17:52,079 | INFO     | will attempt to kill all subprocesses of pid=1670723
[2025-11-26 11:18:42] 2025-11-26 11:17:53,428 | INFO     | process IDs to be killed: [1670723] (in reverse order)
[2025-11-26 11:18:42] 2025-11-26 11:18:02,744 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:18:42] 2025-11-26 11:18:02,744 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:18:42] 2025-11-26 11:18:02,816 | INFO     | did not find any defunct processes belonging to 1670723
[2025-11-26 11:18:42] 2025-11-26 11:18:02,877 | INFO     | did not find any defunct processes belonging to 1670723
[2025-11-26 11:18:42] 2025-11-26 11:18:02,963 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:18:42] 2025-11-26 11:18:02,963 | INFO     | ready for new job
[2025-11-26 11:18:42] 2025-11-26 11:18:02,963 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:18:42] 2025-11-26 11:18:02,968 | INFO     | ***************************************
[2025-11-26 11:18:42] 2025-11-26 11:18:02,969 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:18:42] 2025-11-26 11:18:02,969 | INFO     | ***************************************
[2025-11-26 11:18:42] 2025-11-26 11:18:02,969 | INFO     | 
[2025-11-26 11:18:42] 2025-11-26 11:18:02,991 | INFO     | architecture information:
[2025-11-26 11:18:42] 2025-11-26 11:18:03,011 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:18:42] 2025-11-26 11:18:03,572 | INFO     | cat /etc/os-release:
[2025-11-26 11:18:42] NAME="CentOS Linux"
[2025-11-26 11:18:42] VERSION="7 (Core)"
[2025-11-26 11:18:42] ID="centos"
[2025-11-26 11:18:42] ID_LIKE="rhel fedora"
[2025-11-26 11:18:42] VERSION_ID="7"
[2025-11-26 11:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:18:42] ANSI_COLOR="0;31"
[2025-11-26 11:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:18:42] HOME_URL="https://www.centos.org/"
[2025-11-26 11:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:18:42] 
[2025-11-26 11:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:18:42] 
[2025-11-26 11:18:42] 2025-11-26 11:18:03,572 | INFO     | ***************************************
[2025-11-26 11:18:42] 2025-11-26 11:18:04,079 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31420/slots/0
[2025-11-26 11:18:42] 2025-11-26 11:18:04,583 | INFO     | sufficient remaining disk space (332375523328 B)
[2025-11-26 11:18:42] 2025-11-26 11:18:04,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:18:42] 2025-11-26 11:18:04,584 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:18:42] 2025-11-26 11:18:04,584 | INFO     | update_server=False
[2025-11-26 11:18:42] 2025-11-26 11:18:04,584 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:18:42] 2025-11-26 11:18:04,584 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:18:42] 2025-11-26 11:18:04,711 | INFO     | all payload control threads have been joined
[2025-11-26 11:18:42] 2025-11-26 11:18:04,931 | INFO     | all data control threads have been joined
[2025-11-26 11:18:42] 2025-11-26 11:18:05,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:18:42] 2025-11-26 11:18:05,051 | INFO     | aborting loop
[2025-11-26 11:18:42] 2025-11-26 11:18:05,591 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:05,715 | INFO     | all job control threads have been joined
[2025-11-26 11:18:42] 2025-11-26 11:18:05,719 | INFO     | [payload] control thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:05,855 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:05,919 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:05,935 | INFO     | [data] control thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,055 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,155 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:18:42] 2025-11-26 11:18:06,235 | INFO     | [job] validate thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,571 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,587 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,599 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,719 | INFO     | [job] control thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:06,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:18:42] 2025-11-26 11:18:07,003 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:07,915 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:10,251 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:18:42] 2025-11-26 11:18:25,611 | INFO     | PID=1638715 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 11:18:42] 2025-11-26 11:18:25,611 | INFO     | .. there are 20 such processes running
[2025-11-26 11:18:42] 2025-11-26 11:18:25,612 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:18:42] 2025-11-26 11:18:25,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:18:42] 2025-11-26 11:18:25,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:18:42] 2025-11-26 11:18:31,319 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:18:42] 2025-11-26 11:18:32,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614853961536)>', '<ExcThread(monitor, started 140614268086016)>']
[2025-11-26 11:18:42] 2025-11-26 11:18:33,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:18:42] 2025-11-26 11:18:33,663 | INFO     | [monitor] control thread has ended
[2025-11-26 11:18:42] 2025-11-26 11:18:37,995 | INFO     | all workflow threads have been joined
[2025-11-26 11:18:42] 2025-11-26 11:18:37,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:18:42] 2025-11-26 11:18:37,995 | INFO     | traces error code: 0
[2025-11-26 11:18:42] 2025-11-26 11:18:37,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:18:42] 2025-11-26 11:18:38,387 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:18:42] 2025-11-26 11:18:38,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:18:42] 2025-11-26 11:18:38,575 [wrapper] pilotpid: 1638715
[2025-11-26 11:18:42] 2025-11-26 11:18:38,679 [wrapper] Pilot exit status: 0
[2025-11-26 11:18:42] 2025-11-26 11:18:39,183 [wrapper] pandaids: 6893873727
[2025-11-26 11:18:42] 2025-11-26 11:18:39,775 [wrapper] cleanup supervisor_pilot 3202152 1638716
[2025-11-26 11:18:42] 2025-11-26 11:18:39,879 [wrapper] Test setup, not cleaning
[2025-11-26 11:18:42] 2025-11-26 11:18:39,979 [wrapper] apfmon messages muted
[2025-11-26 11:18:42] 2025-11-26 11:18:40,073 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:18:42] 2025-11-26 11:18:40,147 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:18:42]  *** Error codes and diagnostics ***
[2025-11-26 11:18:42]     "exeErrorCode": 0,
[2025-11-26 11:18:42]     "exeErrorDiag": "",
[2025-11-26 11:18:42]     "pilotErrorCode": 0,
[2025-11-26 11:18:42]     "pilotErrorDiag": "",
[2025-11-26 11:18:42]  *** Listing of results directory ***
[2025-11-26 11:18:42] total 1325944
[2025-11-26 11:18:42] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-26 11:18:42] -rwx------ 1 boinc boinc     36292 Nov 20 15:27 runpilot2-wrapper.sh
[2025-11-26 11:18:42] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:27 queuedata.json
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc       100 Nov 25 22:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:18:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 22:47 run_atlas
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc       105 Nov 25 22:47 job.xml
[2025-11-26 11:18:42] -rw-r--r-- 2 boinc boinc 410695380 Nov 25 22:47 EVNT.47493127._000695.pool.root.1
[2025-11-26 11:18:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:47 start_atlas.sh
[2025-11-26 11:18:42] drwxrwx--x 2 boinc boinc      4096 Nov 25 22:47 shared
[2025-11-26 11:18:42] -rw-r--r-- 2 boinc boinc    590095 Nov 25 22:47 input.tar.gz
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc      6592 Nov 25 22:47 init_data.xml
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc         0 Nov 25 22:47 boinc_setup_complete
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc         0 Nov 25 22:47 boinc_lockfile
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc      2785 Nov 25 22:47 pandaJob.out
[2025-11-26 11:18:42] -rw------- 1 boinc boinc    991877 Nov 25 22:53 agis_schedconf.cvmfs.json
[2025-11-26 11:18:42] drwx------ 5 boinc boinc      4096 Nov 25 22:53 pilot3
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc       533 Nov 26 10:25 boinc_task_state.xml
[2025-11-26 11:18:42] -rw------- 1 boinc boinc 927030034 Nov 26 11:13 HITS.47523449._006946.pool.root.1
[2025-11-26 11:18:42] -rw------- 1 boinc boinc      1039 Nov 26 11:15 memory_monitor_summary.json
[2025-11-26 11:18:42] -rw------- 1 boinc boinc   1516240 Nov 26 11:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:18:42] -rw------- 1 boinc boinc   2349538 Nov 26 11:15 log.47523449._006946.job.log.tgz.1
[2025-11-26 11:18:42] -rw------- 1 boinc boinc      8563 Nov 26 11:17 heartbeat.json
[2025-11-26 11:18:42] -rw------- 1 boinc boinc        95 Nov 26 11:18 pilot_heartbeat.json
[2025-11-26 11:18:42] -rw------- 1 boinc boinc      4848 Nov 26 11:18 pilotlog.txt
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc      8192 Nov 26 11:18 boinc_mmap_file
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc        29 Nov 26 11:18 wrapper_checkpoint.txt
[2025-11-26 11:18:42] -rw------- 1 boinc boinc   5710771 Nov 26 11:18 log.47523449._006946.job.log.1
[2025-11-26 11:18:42] -rw------- 1 boinc boinc       353 Nov 26 11:18 output.list
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc       620 Nov 26 11:18 runtime_log
[2025-11-26 11:18:42] -rw------- 1 boinc boinc   8079360 Nov 26 11:18 result.tar.gz
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc      9168 Nov 26 11:18 runtime_log.err
[2025-11-26 11:18:42] -rw------- 1 boinc boinc       660 Nov 26 11:18 n3IODm4jLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtrGKDm152xSn.diag
[2025-11-26 11:18:42] -rw-rw-r-- 1 boinc boinc     21693 Nov 26 11:18 stderr.txt
[2025-11-26 11:18:42] HITS file was successfully produced:
[2025-11-26 11:18:42] -rw------- 1 boinc boinc 927030034 Nov 26 11:13 shared/HITS.pool.root.1
[2025-11-26 11:18:42]  *** Contents of shared directory: ***
[2025-11-26 11:18:42] total 1314872
[2025-11-26 11:18:42] -rw-r--r-- 2 boinc boinc 410695380 Nov 25 22:47 ATLAS.root_0
[2025-11-26 11:18:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:47 start_atlas.sh
[2025-11-26 11:18:42] -rw-r--r-- 2 boinc boinc    590095 Nov 25 22:47 input.tar.gz
[2025-11-26 11:18:42] -rw------- 1 boinc boinc 927030034 Nov 26 11:13 HITS.pool.root.1
[2025-11-26 11:18:42] -rw------- 1 boinc boinc   8079360 Nov 26 11:18 result.tar.gz
11:18:44 (1622313): run_atlas exited; CPU time 265889.626082
11:18:44 (1622313): called boinc_finish(0)

</stderr_txt>
]]>

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