Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:02:28 (819760): wrapper (7.7.26015): starting
05:02:28 (819760): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 05:02:28] Arguments: --nthreads 4
[2025-11-23 05:02:28] Threads: 4
[2025-11-23 05:02:28] Checking for CVMFS
[2025-11-23 05:02:28] No cvmfs_config command found, will try listing directly
[2025-11-23 05:02:28] CVMFS is ok
[2025-11-23 05:02:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 05:02:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 05:02:28] Further information can be found at the LHC@home message board.
[2025-11-23 05:02:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 05:02:28] Checking for apptainer binary...
[2025-11-23 05:02:28] which: no apptainer in ((null))
[2025-11-23 05:02:28] apptainer is not installed, using version from CVMFS
[2025-11-23 05:02:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 05:02:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-23 05:02:29] apptainer works
[2025-11-23 05:02:29] Set ATHENA_PROC_NUMBER=4
[2025-11-23 05:02:29] Set ATHENA_CORE_NUMBER=4
[2025-11-23 05:02:29] Starting ATLAS job with PandaID=6894259515
[2025-11-23 05:02:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:02:42]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:02:42] 2025-11-23 21:00:02,144 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 22:02:42] 2025-11-23 21:00:02,167 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2695.4011093750005
[2025-11-23 22:02:42] 2025-11-23 21:00:02,192 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6894259515/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,192 | INFO     | extracted standard info from prmon json
[2025-11-23 22:02:42] 2025-11-23 21:00:02,193 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:02:42] 2025-11-23 21:00:02,193 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:02:42] 2025-11-23 21:00:02,210 | INFO     | fitting pss+swap vs Time
[2025-11-23 22:02:42] 2025-11-23 21:00:02,212 | INFO     | sum of square deviations: 310082350944.5507
[2025-11-23 22:02:42] 2025-11-23 21:00:02,237 | INFO     | sum of deviations: 841706340602.8384
[2025-11-23 22:02:42] 2025-11-23 21:00:02,237 | INFO     | mean x: 1763901068.607
[2025-11-23 22:02:42] 2025-11-23 21:00:02,237 | INFO     | mean y: 2266415.109
[2025-11-23 22:02:42] 2025-11-23 21:00:02,237 | INFO     | intersect: -4785773630.124427
[2025-11-23 22:02:42] 2025-11-23 21:00:02,238 | INFO     | chi2: 4.531614399295158
[2025-11-23 22:02:42] 2025-11-23 21:00:02,240 | INFO     | sum of square deviations: 305454352619.49365
[2025-11-23 22:02:42] 2025-11-23 21:00:02,263 | INFO     | sum of deviations: 1063889693976.8823
[2025-11-23 22:02:42] 2025-11-23 21:00:02,264 | INFO     | mean x: 1763900916.1075377
[2025-11-23 22:02:42] 2025-11-23 21:00:02,264 | INFO     | mean y: 2273732.935678392
[2025-11-23 22:02:42] 2025-11-23 21:00:02,264 | INFO     | intersect: -6141348021.837212
[2025-11-23 22:02:42] 2025-11-23 21:00:02,265 | INFO     | chi2: 2.0116663613102657
[2025-11-23 22:02:42] 2025-11-23 21:00:02,265 | INFO     | current chi2=2.0116663613102657 (change=55.60817439314435 %)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,266 | INFO     | sum of square deviations: 300872634231.93445
[2025-11-23 22:02:42] 2025-11-23 21:00:02,291 | INFO     | sum of deviations: 1059848400042.8413
[2025-11-23 22:02:42] 2025-11-23 21:00:02,291 | INFO     | mean x: 1763900763.6080809
[2025-11-23 22:02:42] 2025-11-23 21:00:02,291 | INFO     | mean y: 2273597.66969697
[2025-11-23 22:02:42] 2025-11-23 21:00:02,291 | INFO     | intersect: -6211210745.686202
[2025-11-23 22:02:42] 2025-11-23 21:00:02,293 | INFO     | chi2: 2.0020677044854147
[2025-11-23 22:02:42] 2025-11-23 21:00:02,293 | INFO     | current chi2=2.0020677044854147 (change=0.477149541765913 %)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,293 | INFO     | right removable region: 989
[2025-11-23 22:02:42] 2025-11-23 21:00:02,294 | INFO     | sum of square deviations: 305454287349.4937
[2025-11-23 22:02:42] 2025-11-23 21:00:02,318 | INFO     | sum of deviations: 658180531866.2332
[2025-11-23 22:02:42] 2025-11-23 21:00:02,318 | INFO     | mean x: 1763901221.1075377
[2025-11-23 22:02:42] 2025-11-23 21:00:02,318 | INFO     | mean y: 2272452.3155778893
[2025-11-23 22:02:42] 2025-11-23 21:00:02,318 | INFO     | intersect: -3798510486.244743
[2025-11-23 22:02:42] 2025-11-23 21:00:02,319 | INFO     | chi2: 2.6649824555477086
[2025-11-23 22:02:42] 2025-11-23 21:00:02,319 | INFO     | current chi2=2.6649824555477086 (change=41.19132342852876 %)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,320 | INFO     | sum of square deviations: 300872564386.1505
[2025-11-23 22:02:42] 2025-11-23 21:00:02,345 | INFO     | sum of deviations: 630117980242.636
[2025-11-23 22:02:42] 2025-11-23 21:00:02,346 | INFO     | mean x: 1763901373.6070707
[2025-11-23 22:02:42] 2025-11-23 21:00:02,346 | INFO     | mean y: 2273386.423232323
[2025-11-23 22:02:42] 2025-11-23 21:00:02,346 | INFO     | intersect: -3691868594.0931563
[2025-11-23 22:02:42] 2025-11-23 21:00:02,347 | INFO     | chi2: 2.6518540401861443
[2025-11-23 22:02:42] 2025-11-23 21:00:02,347 | INFO     | current chi2=2.6518540401861443 (change=0.4926267088263485 %)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,347 | INFO     | left removable region: 20
[2025-11-23 22:02:42] 2025-11-23 21:00:02,348 | INFO     | sum of square deviations: 282129345004.40375
[2025-11-23 22:02:42] 2025-11-23 21:00:02,373 | INFO     | sum of deviations: 789857101355.7661
[2025-11-23 22:02:42] 2025-11-23 21:00:02,373 | INFO     | mean x: 1763901343.1093912
[2025-11-23 22:02:42] 2025-11-23 21:00:02,373 | INFO     | mean y: 2282616.926728586
[2025-11-23 22:02:42] 2025-11-23 21:00:02,374 | INFO     | intersect: -4935984268.867019
[2025-11-23 22:02:42] 2025-11-23 21:00:02,375 | INFO     | chi2: 0.0859350634019259
[2025-11-23 22:02:42] 2025-11-23 21:00:02,375 | INFO     | current memory leak: 2.80 B/s (using 969 data points, chi2=0.09)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,376 | INFO     | could have reported an average CPU frequency of 2678 MHz (37 samples)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,376 | INFO     | ..............................
[2025-11-23 22:02:42] 2025-11-23 21:00:02,376 | INFO     | . Timing measurements:
[2025-11-23 22:02:42] 2025-11-23 21:00:02,376 | INFO     | . get job = 0 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,376 | INFO     | . initial setup = 1 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,377 | INFO     | . payload setup = 9 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,377 | INFO     | time since job start (61039s) is within the limit (172800.0s)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,377 | INFO     | . stage-in = 0 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,377 | INFO     | . payload execution = 60995 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,377 | INFO     | . stage-out = 2 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,378 | INFO     | . log creation = 0 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,378 | INFO     | ..............................
[2025-11-23 22:02:42] 2025-11-23 21:00:02,480 | INFO     | 
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | job summary report
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | --------------------------------------------------
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | PanDA job id: 6894259515
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | task id: 47533967
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | errors: (none)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | pilot state: finished 
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | transexitcode: 0
[2025-11-23 22:02:42] 2025-11-23 21:00:02,481 | INFO     | exeerrorcode: 0
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | exeerrordiag: 
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | exitcode: 0
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | exitmsg: OK
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | cpuconsumptiontime: 233600 s
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | nevents: 1000
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | neventsw: 0
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | pid: 832053
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | pgrp: 832053
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | corecount: 4
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | event service: False
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | sizes: {0: 2298818, 7: 2299080, 11: 2299108, 61009: 2354199, 61012: 2363217, 61014: 2363273, 61021: 2363647}
[2025-11-23 22:02:42] 2025-11-23 21:00:02,482 | INFO     | --------------------------------------------------
[2025-11-23 22:02:42] 2025-11-23 21:00:02,483 | INFO     | 
[2025-11-23 22:02:42] 2025-11-23 21:00:02,483 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-23 22:02:42] 2025-11-23 21:00:02,516 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:02:42] 2025-11-23 21:00:02,518 | INFO     | job 6894259515 has completed (purged errors)
[2025-11-23 22:02:42] 2025-11-23 21:00:02,519 | INFO     | overall cleanup function is called
[2025-11-23 22:02:42] 2025-11-23 21:00:03,536 | INFO     | --- collectZombieJob: --- 10, [832053]
[2025-11-23 22:02:42] 2025-11-23 21:00:03,536 | INFO     | zombie collector waiting for pid 832053
[2025-11-23 22:02:42] 2025-11-23 21:00:03,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:02:42] 2025-11-23 21:00:03,536 | INFO     | collected zombie processes
[2025-11-23 22:02:42] 2025-11-23 21:00:03,536 | INFO     | will attempt to kill all subprocesses of pid=832053
[2025-11-23 22:02:42] 2025-11-23 21:00:05,430 | INFO     | PID=824199 has CPU usage=27.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 22:02:42] 2025-11-23 21:00:05,431 | INFO     | .. there are 9 such processes running
[2025-11-23 22:02:42] 2025-11-23 21:00:05,458 | INFO     | process IDs to be killed: [832053] (in reverse order)
[2025-11-23 22:02:42] 2025-11-23 21:00:05,718 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:02:42] 2025-11-23 21:00:05,719 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:02:42] 2025-11-23 21:00:05,749 | INFO     | did not find any defunct processes belonging to 832053
[2025-11-23 22:02:42] 2025-11-23 21:00:05,781 | INFO     | did not find any defunct processes belonging to 832053
[2025-11-23 22:02:42] 2025-11-23 21:00:05,782 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:02:42] 2025-11-23 21:00:05,782 | INFO     | ready for new job
[2025-11-23 22:02:42] 2025-11-23 21:00:05,782 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:02:42] 2025-11-23 21:00:05,789 | INFO     | ***************************************
[2025-11-23 22:02:42] 2025-11-23 21:00:05,790 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:02:42] 2025-11-23 21:00:05,790 | INFO     | ***************************************
[2025-11-23 22:02:42] 2025-11-23 21:00:05,790 | INFO     | 
[2025-11-23 22:02:42] 2025-11-23 21:00:05,798 | INFO     | architecture information:
[2025-11-23 22:02:42] 2025-11-23 21:00:05,798 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:02:42] 2025-11-23 21:00:05,822 | INFO     | cat /etc/os-release:
[2025-11-23 22:02:42] NAME="CentOS Linux"
[2025-11-23 22:02:42] VERSION="7 (Core)"
[2025-11-23 22:02:42] ID="centos"
[2025-11-23 22:02:42] ID_LIKE="rhel fedora"
[2025-11-23 22:02:42] VERSION_ID="7"
[2025-11-23 22:02:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:02:42] ANSI_COLOR="0;31"
[2025-11-23 22:02:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:02:42] HOME_URL="https://www.centos.org/"
[2025-11-23 22:02:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:02:42] 
[2025-11-23 22:02:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:02:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:02:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:02:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:02:42] 
[2025-11-23 22:02:42] 2025-11-23 21:00:05,822 | INFO     | ***************************************
[2025-11-23 22:02:42] 2025-11-23 21:00:06,326 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-23 22:02:42] 2025-11-23 21:00:06,352 | INFO     | sufficient remaining disk space (3321606701056 B)
[2025-11-23 22:02:42] 2025-11-23 21:00:06,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:02:42] 2025-11-23 21:00:06,353 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:02:42] 2025-11-23 21:00:06,353 | INFO     | update_server=False
[2025-11-23 22:02:42] 2025-11-23 21:00:06,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:02:42] 2025-11-23 21:00:06,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:02:42] 2025-11-23 21:00:06,354 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 22:02:42] 2025-11-23 21:00:06,354 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:02:42] 2025-11-23 21:00:06,354 | INFO     | aborting loop
[2025-11-23 22:02:42] 2025-11-23 21:00:06,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:02:42] 2025-11-23 21:00:06,355 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:02:42] 2025-11-23 21:00:06,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:02:42] 2025-11-23 21:00:06,394 | INFO     | all data control threads have been joined
[2025-11-23 22:02:42] 2025-11-23 21:00:06,660 | INFO     | all job control threads have been joined
[2025-11-23 22:02:42] 2025-11-23 21:00:07,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:02:42] 2025-11-23 21:00:07,356 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:07,357 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:07,400 | INFO     | [data] control thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:07,492 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:02:42] 2025-11-23 21:00:07,662 | INFO     | [job] validate thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:07,665 | INFO     | [job] control thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:07,778 | INFO     | all payload control threads have been joined
[2025-11-23 22:02:42] 2025-11-23 21:00:07,929 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:08,175 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:08,377 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:08,387 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:08,497 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:08,558 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:08,643 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:08,783 | INFO     | [payload] control thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:09,262 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:10,362 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:17,375 | INFO     | job.realtimelogging is not enabled
[2025-11-23 22:02:42] 2025-11-23 21:00:18,375 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:02:42] 2025-11-23 21:00:26,407 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:02:42] 2025-11-23 21:00:27,411 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22384765069120)>', '<ExcThread(monitor, started 22384518051584)>']
[2025-11-23 22:02:42] 2025-11-23 21:00:27,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:02:42] 2025-11-23 21:00:27,460 | INFO     | [monitor] control thread has ended
[2025-11-23 22:02:42] 2025-11-23 21:00:32,437 | INFO     | all workflow threads have been joined
[2025-11-23 22:02:42] 2025-11-23 21:00:32,437 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:02:42] 2025-11-23 21:00:32,437 | INFO     | traces error code: 0
[2025-11-23 22:02:42] 2025-11-23 21:00:32,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:02:42] 2025-11-23 21:00:32,636 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:02:42] 2025-11-23 21:00:32,640 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:02:42] 2025-11-23 21:00:32,644 [wrapper] pilotpid: 824199
[2025-11-23 22:02:42] 2025-11-23 21:00:32,647 [wrapper] Pilot exit status: 0
[2025-11-23 22:02:42] 2025-11-23 21:00:32,661 [wrapper] pandaids: 6894259515
[2025-11-23 22:02:42] 2025-11-23 21:00:32,831 [wrapper] cleanup supervisor_pilot 2578993 824200
[2025-11-23 22:02:42] 2025-11-23 21:00:32,835 [wrapper] Test setup, not cleaning
[2025-11-23 22:02:42] 2025-11-23 21:00:32,838 [wrapper] apfmon messages muted
[2025-11-23 22:02:42] 2025-11-23 21:00:32,840 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:02:42] 2025-11-23 21:00:32,843 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:02:42]  *** Error codes and diagnostics ***
[2025-11-23 22:02:42]     "exeErrorCode": 0,
[2025-11-23 22:02:42]     "exeErrorDiag": "",
[2025-11-23 22:02:42]     "pilotErrorCode": 0,
[2025-11-23 22:02:42]     "pilotErrorDiag": "",
[2025-11-23 22:02:42]  *** Listing of results directory ***
[2025-11-23 22:02:42] total 1330388
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-23 22:02:42] -rwx------ 1 boinc boinc     36292 Nov 21 05:29 runpilot2-wrapper.sh
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc      5112 Nov 21 05:29 queuedata.json
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc       100 Nov 23 05:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:02:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 05:02 run_atlas
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc       105 Nov 23 05:02 job.xml
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc      6688 Nov 23 05:02 init_data.xml
[2025-11-23 22:02:42] -rw-r--r-- 2 boinc boinc 412854148 Nov 23 05:02 EVNT.47493127._002186.pool.root.1
[2025-11-23 22:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 23 05:02 start_atlas.sh
[2025-11-23 22:02:42] drwxrwx--x 2 boinc boinc      4096 Nov 23 05:02 shared
[2025-11-23 22:02:42] -rw-r--r-- 2 boinc boinc    590102 Nov 23 05:02 input.tar.gz
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc         0 Nov 23 05:02 boinc_lockfile
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc      2785 Nov 23 05:02 pandaJob.out
[2025-11-23 22:02:42] -rw------- 1 boinc boinc    989784 Nov 23 05:02 agis_schedconf.cvmfs.json
[2025-11-23 22:02:42] drwx------ 5 boinc boinc      4096 Nov 23 05:02 pilot3
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc       532 Nov 23 21:53 boinc_task_state.xml
[2025-11-23 22:02:42] -rw------- 1 boinc boinc 925650578 Nov 23 21:59 HITS.47533967._001578.pool.root.1
[2025-11-23 22:02:42] -rw------- 1 boinc boinc        95 Nov 23 21:59 pilot_heartbeat.json
[2025-11-23 22:02:42] -rw------- 1 boinc boinc      1039 Nov 23 21:59 memory_monitor_summary.json
[2025-11-23 22:02:42] -rw------- 1 boinc boinc   1526164 Nov 23 21:59 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:02:42] -rw------- 1 boinc boinc   1709627 Nov 23 21:59 log.47533967._001578.job.log.tgz.1
[2025-11-23 22:02:42] -rw------- 1 boinc boinc      8608 Nov 23 22:00 heartbeat.json
[2025-11-23 22:02:42] -rw------- 1 boinc boinc      4636 Nov 23 22:00 pilotlog.txt
[2025-11-23 22:02:42] -rw------- 1 boinc boinc   8236848 Nov 23 22:00 log.47533967._001578.job.log.1
[2025-11-23 22:02:42] -rw------- 1 boinc boinc       353 Nov 23 22:00 output.list
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:00 runtime_log
[2025-11-23 22:02:42] -rw------- 1 boinc boinc   9963520 Nov 23 22:00 result.tar.gz
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc      9223 Nov 23 22:00 runtime_log.err
[2025-11-23 22:02:42] -rw------- 1 boinc boinc       671 Nov 23 22:00 ca8NDmZxXg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5IHKDmi01zWo.diag
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc        28 Nov 23 22:02 wrapper_checkpoint.txt
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc      8192 Nov 23 22:02 boinc_mmap_file
[2025-11-23 22:02:42] -rw-r--r-- 1 boinc boinc     21075 Nov 23 22:02 stderr.txt
[2025-11-23 22:02:42] HITS file was successfully produced:
[2025-11-23 22:02:42] -rw------- 1 boinc boinc 925650578 Nov 23 21:59 shared/HITS.pool.root.1
[2025-11-23 22:02:42]  *** Contents of shared directory: ***
[2025-11-23 22:02:42] total 1317472
[2025-11-23 22:02:42] -rw-r--r-- 2 boinc boinc 412854148 Nov 23 05:02 ATLAS.root_0
[2025-11-23 22:02:42] -rw-r--r-- 2 boinc boinc     15847 Nov 23 05:02 start_atlas.sh
[2025-11-23 22:02:42] -rw-r--r-- 2 boinc boinc    590102 Nov 23 05:02 input.tar.gz
[2025-11-23 22:02:42] -rw------- 1 boinc boinc 925650578 Nov 23 21:59 HITS.pool.root.1
[2025-11-23 22:02:42] -rw------- 1 boinc boinc   9963520 Nov 23 22:00 result.tar.gz
22:02:43 (819760): run_atlas exited; CPU time 236359.591848
22:02:43 (819760): called boinc_finish(0)

</stderr_txt>
]]>

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