Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 16:55:36 (113054): vboxwrapper version 26210
2025-11-23 16:55:36 (113054): BOINC client version: 8.2.2
2025-11-23 16:55:36 (113054): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-11-23 16:55:36 (113054): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 16:55:37 (113054): Create VM. (boinc_75048cf408aebf00, slot#0)
2025-11-23 16:55:37 (113054): Setting Memory Size for VM. (4400MB)
2025-11-23 16:55:37 (113054): Setting CPU Count for VM. (4)
2025-11-23 16:55:37 (113054): Setting Chipset Options for VM.
2025-11-23 16:55:37 (113054): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 16:55:37 (113054): Setting Boot Options for VM.
2025-11-23 16:55:37 (113054): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 16:55:37 (113054): Enabling VM Network Access.
2025-11-23 16:55:37 (113054): Disabling USB Support for VM.
2025-11-23 16:55:37 (113054): Disabling COM Port Support for VM.
2025-11-23 16:55:37 (113054): Disabling LPT Port Support for VM.
2025-11-23 16:55:37 (113054): Disabling Audio Support for VM.
2025-11-23 16:55:37 (113054): Disabling Clipboard Support for VM.
2025-11-23 16:55:37 (113054): Disabling Drag and Drop Support for VM.
2025-11-23 16:55:37 (113054): Adding storage controller(s) to VM.
2025-11-23 16:55:37 (113054): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 16:55:37 (113054): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 16:55:37 (113054): forwarding host port 35755 to guest port 80
2025-11-23 16:55:38 (113054): Enabling remote desktop for VM.
2025-11-23 16:55:38 (113054): Enabling shared directory for VM.
2025-11-23 16:55:38 (113054): Starting VM using VBoxManage interface. (boinc_75048cf408aebf00, slot#0)
2025-11-23 16:55:39 (113054): Successfully started VM. (PID = '113327')
2025-11-23 16:55:39 (113054): Reporting VM Process ID to BOINC.
2025-11-23 16:55:39 (113054): Guest Log: BIOS: VirtualBox 7.1.10
2025-11-23 16:55:39 (113054): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 16:55:39 (113054): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 16:55:39 (113054): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 16:55:39 (113054): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 16:55:39 (113054): Detected: Web Application Enabled (http://localhost:35755)
2025-11-23 16:55:39 (113054): Detected: Remote Desktop Enabled (localhost:41315)
2025-11-23 16:55:39 (113054): Preference change detected
2025-11-23 16:55:39 (113054): Setting CPU throttle for VM. (100%)
2025-11-23 16:55:39 (113054): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 16:55:41 (113054): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 16:55:41 (113054): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 16:55:44 (113054): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 16:55:44 (113054): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 16:55:44 (113054): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 16:55:53 (113054): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 16:55:53 (113054): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 16:56:01 (113054): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.000399 main     Log opened 2025-11-23T15:55:59.704913000Z
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.000618 main     OS Product: Linux
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.000690 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.000820 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.000883 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.000885 main     Process ID: 1309
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.000886 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 16:56:01 (113054): Guest Log: 00:00:00.003397 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 16:56:01 (113054): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 16:56:01 (113054): Guest Log: [INFO] Mounting shared directory
2025-11-23 16:56:02 (113054): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 16:56:09 (113054): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 16:56:09 (113054): Guest Log: [INFO] Detected branch: prod
2025-11-23 16:56:10 (113054): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 16:56:10 (113054): Guest Log: Copying input files
2025-11-23 16:56:12 (113054): Guest Log: Copied input files into RunAtlas.
2025-11-23 16:56:12 (113054): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 16:56:12 (113054): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 16:56:12 (113054): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 16:56:12 (113054): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 16:56:26 (113054): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 16:56:27 (113054): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 16:56:27 (113054): Guest Log: 2.6.3.0 1605 0 30184 153213 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 16:56:33 (113054): Guest Log: copied the webapp to /var/www
2025-11-23 16:56:33 (113054): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-23 16:56:33 (113054): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-23 16:56:33 (113054): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 16:56:33 (113054): Guest Log:  *** Starting ATLAS job. (PandaID=6894237919 taskID=47533967) ***
2025-11-23 18:34:39 (113054): Status Report: Elapsed Time: '6000.000000'
2025-11-23 18:34:39 (113054): Status Report: CPU Time: '22226.180000'
2025-11-23 20:13:40 (113054): Status Report: Elapsed Time: '12000.000000'
2025-11-23 20:13:40 (113054): Status Report: CPU Time: '45944.860000'
2025-11-23 21:52:40 (113054): Status Report: Elapsed Time: '18000.000000'
2025-11-23 21:52:40 (113054): Status Report: CPU Time: '69668.410000'
2025-11-23 23:31:41 (113054): Status Report: Elapsed Time: '24000.000000'
2025-11-23 23:31:41 (113054): Status Report: CPU Time: '93392.450000'
2025-11-24 01:10:41 (113054): Status Report: Elapsed Time: '30000.000000'
2025-11-24 01:10:41 (113054): Status Report: CPU Time: '117118.670000'
2025-11-24 02:49:41 (113054): Status Report: Elapsed Time: '36000.000000'
2025-11-24 02:49:41 (113054): Status Report: CPU Time: '140843.600000'
2025-11-24 04:28:42 (113054): Status Report: Elapsed Time: '42000.000000'
2025-11-24 04:28:42 (113054): Status Report: CPU Time: '164572.040000'
2025-11-24 06:07:42 (113054): Status Report: Elapsed Time: '48000.000000'
2025-11-24 06:07:42 (113054): Status Report: CPU Time: '188299.960000'
2025-11-24 07:46:43 (113054): Status Report: Elapsed Time: '54000.000000'
2025-11-24 07:46:43 (113054): Status Report: CPU Time: '212027.390000'
2025-11-24 09:25:43 (113054): Status Report: Elapsed Time: '60000.000000'
2025-11-24 09:25:43 (113054): Status Report: CPU Time: '235754.990000'
2025-11-24 10:12:50 (113054): Guest Log:  *** Job finished ***
2025-11-24 10:12:50 (113054): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:14,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:14,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:40,025 | INFO     | [monitor] cgroup control has ended
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:40,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809139734336)>', '<ExcThread(monitor, started 139807896368896)>']
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:41,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:41,241 | INFO     | [monitor] control thread has ended
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,545 | INFO     | all workflow threads have been joined
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,546 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,546 | INFO     | traces error code: 0
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,827 [wrapper] ==== pilot stdout END ====
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,840 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,853 [wrapper] pilotpid: 6007
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,865 [wrapper] Pilot exit status: 0
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,905 [wrapper] pandaids: 6894237919
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:45,989 [wrapper] cleanup supervisor_pilot 17449 6008
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:46,003 [wrapper] Test setup, not cleaning
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:46,015 [wrapper] apfmon messages muted
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:46,028 [wrapper] ==== wrapper stdout END ====
2025-11-24 10:12:50 (113054): Guest Log: 2025-11-24 09:12:46,041 [wrapper] ==== wrapper stderr END ====
2025-11-24 10:12:50 (113054): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 10:12:50 (113054): Guest Log:     "exeErrorCode": 0,
2025-11-24 10:12:50 (113054): Guest Log:     "exeErrorDiag": "",
2025-11-24 10:12:50 (113054): Guest Log:     "pilotErrorCode": 0,
2025-11-24 10:12:50 (113054): Guest Log:     "pilotErrorDiag": "",
2025-11-24 10:12:50 (113054): Guest Log:  *** Listing of results directory ***
2025-11-24 10:12:50 (113054): Guest Log: total 936928
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 00:06 pilot3.tar.gz
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 00:13 queuedata.json
2025-11-24 10:12:50 (113054): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 00:14 runpilot2-wrapper.sh
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas      5962 Nov 23 15:56 init_data.xml
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Nov 23 15:56 start_atlas.sh
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas    590103 Nov 23 15:56 input.tar.gz
2025-11-24 10:12:50 (113054): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 15:56 EVNT.47493127._002037.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas      2783 Nov 23 15:56 pandaJob.out
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas    989785 Nov 23 15:57 agis_schedconf.cvmfs.json
2025-11-24 10:12:50 (113054): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 15:57 pilot3
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas 936709092 Nov 24 09:10 HITS.47533967._000083.pool.root.1
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 24 09:11 memory_monitor_summary.json
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 24 09:11 agis_ddmendpoints.agis.ALL.json
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas   1703295 Nov 24 09:11 log.47533967._000083.job.log.tgz.1
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas      8621 Nov 24 09:11 heartbeat.json
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 09:12 pilot_heartbeat.json
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 24 09:12 pilotlog.txt
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas   7723665 Nov 24 09:12 log.47533967._000083.job.log.1
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 09:12 output.list
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 09:12 runtime_log
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas   9451520 Nov 24 09:12 result.tar.gz
2025-11-24 10:12:50 (113054): Guest Log: -rw-r--r--. 1 atlas atlas      8716 Nov 24 09:12 runtime_log.err
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas       655 Nov 24 09:12 5tMMDmMyTg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXiIKDmhOcUyn.diag
2025-11-24 10:12:50 (113054): Guest Log: Looking for outputfile HITS.47533967._000083.pool.root.1
2025-11-24 10:12:50 (113054): Guest Log: HITS file was successfully produced
2025-11-24 10:12:50 (113054): Guest Log: -rw-------. 1 atlas atlas 936709092 Nov 24 09:10 /home/atlas/RunAtlas/HITS.47533967._000083.pool.root.1
2025-11-24 10:12:50 (113054): Guest Log: Successfully finished the ATLAS job!
2025-11-24 10:12:50 (113054): Guest Log: Copying the results back to the shared directory!
2025-11-24 10:12:51 (113054): Guest Log:  *** Contents of shared directory: ***
2025-11-24 10:12:51 (113054): Guest Log: total 410980
2025-11-24 10:12:51 (113054): Guest Log: -rw-r--r--. 1 root root 410764303 Nov 23 15:55 ATLAS.root_0
2025-11-24 10:12:51 (113054): Guest Log: -rw-r--r--. 1 root root      5962 Nov 23 15:55 init_data.xml
2025-11-24 10:12:51 (113054): Guest Log: -rw-r--r--. 1 root root    590103 Nov 23 15:55 input.tar.gz
2025-11-24 10:12:51 (113054): Guest Log: -rw-r--r--. 1 root root   9451520 Nov 24 09:12 result.tar.gz
2025-11-24 10:12:51 (113054): Guest Log: -rw-r--r--. 1 root root     15847 Nov 23 15:55 start_atlas.sh
2025-11-24 10:12:51 (113054): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 10:12:51 (113054): VM Completion File Detected.
2025-11-24 10:12:51 (113054): Powering off VM.
2025-11-24 10:12:51 (113054): Successfully stopped VM.
2025-11-24 10:12:51 (113054): Deregistering VM. (boinc_75048cf408aebf00, slot#0)
2025-11-24 10:12:51 (113054): Removing network bandwidth throttle group from VM.
2025-11-24 10:12:51 (113054): Removing VM from VirtualBox.
2025-11-24 10:12:56 (113054): called boinc_finish(0)

</stderr_txt>
]]>

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