Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:37:44 (3468458): wrapper (7.7.26015): starting
20:37:44 (3468458): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 20:37:44] Arguments: --nthreads 3
[2025-11-21 20:37:44] Threads: 3
[2025-11-21 20:37:44] Checking for CVMFS
[2025-11-21 20:37:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 20:37:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 20:37:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 20:37:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 20:37:45] 2.9.2.0 16720 1844 77376 153141 3 88 34551405 36864001 0 130560 0 22959051 99.999 45607 1855 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 20:37:45] CVMFS is ok
[2025-11-21 20:37:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 20:37:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 20:37:45] Further information can be found at the LHC@home message board.
[2025-11-21 20:37:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 20:37:45] Checking for apptainer binary...
[2025-11-21 20:37:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 20:37:45] Running /usr/bin/apptainer --version
[2025-11-21 20:37:45] apptainer version 1.4.1-1.1
[2025-11-21 20:37:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 20:37:45] thA335
[2025-11-21 20:37:45] apptainer works
[2025-11-21 20:37:45] Set ATHENA_PROC_NUMBER=3
[2025-11-21 20:37:45] Set ATHENA_CORE_NUMBER=3
[2025-11-21 20:37:45] Starting ATLAS job with PandaID=6894262120
[2025-11-21 20:37:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 20:42:03]  *** The last 200 lines of the pilot log: ***
[2025-11-21 20:42:03] 2025-11-21 19:41:15,366 | INFO     | update_server=False
[2025-11-21 20:42:03] 2025-11-21 19:41:15,366 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 20:42:03] 2025-11-21 19:41:15,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:42:03] 2025-11-21 19:41:15,366 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:42:03] 2025-11-21 19:41:15,366 | INFO     | aborting loop
[2025-11-21 20:42:03] 2025-11-21 19:41:16,175 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 20:42:03] 2025-11-21 19:41:16,268 | INFO     | all job control threads have been joined
[2025-11-21 20:42:03] 2025-11-21 19:41:16,372 | INFO     | [job] retrieve thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:16,373 | INFO     | [job] queue monitor thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:16,373 | INFO     | [job] job monitor thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:16,405 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:16,430 | INFO     | all data control threads have been joined
[2025-11-21 20:42:03] 2025-11-21 19:41:16,530 | INFO     | [data] copytool_in thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:16,603 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:16,858 | INFO     | all payload control threads have been joined
[2025-11-21 20:42:03] 2025-11-21 19:41:17,274 | INFO     | [job] control thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:17,275 | INFO     | [payload] failed_post thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:17,437 | INFO     | [data] control thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:17,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:17,724 | INFO     | [payload] validate_post thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:17,770 | INFO     | [job] validate thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:17,860 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:17,863 | INFO     | [payload] control thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:18,182 | INFO     | [data] copytool_out thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:18,480 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 20:42:03] 2025-11-21 19:41:22,487 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 20:42:03] 2025-11-21 19:41:45,658 | INFO     | PID=3472189 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 20:42:03] 2025-11-21 19:41:45,658 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 20:42:03] 2025-11-21 19:41:45,658 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 20:42:03] 2025-11-21 19:41:45,658 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 20:42:03] 2025-11-21 19:41:56,595 | INFO     | [monitor] cgroup control has ended
[2025-11-21 20:42:03] 2025-11-21 19:41:58,354 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140023129335616)>', '<ExcThread(monitor, started 140022502123264)>']
[2025-11-21 20:42:03] 2025-11-21 19:41:58,724 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 20:42:03] 2025-11-21 19:41:58,724 | INFO     | [monitor] control thread has ended
[2025-11-21 20:42:03] 2025-11-21 19:42:03,380 | INFO     | all workflow threads have been joined
[2025-11-21 20:42:03] 2025-11-21 19:42:03,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 20:42:03] 2025-11-21 19:42:03,380 | INFO     | traces error code: 0
[2025-11-21 20:42:03] 2025-11-21 19:42:03,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 20:42:03] 2025-11-21 19:42:03,428 [wrapper] ==== pilot stdout END ====
[2025-11-21 20:42:03] 2025-11-21 19:42:03,431 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 20:42:03] 2025-11-21 19:42:03,434 [wrapper] pilotpid: 3472189
[2025-11-21 20:42:03] 2025-11-21 19:42:03,437 [wrapper] Pilot exit status: 0
[2025-11-21 20:42:03] 2025-11-21 19:42:03,444 [wrapper] pandaids: 6894262120
[2025-11-21 20:42:03] 2025-11-21 19:42:03,461 [wrapper] cleanup supervisor_pilot 3472195 3472190
[2025-11-21 20:42:03] 2025-11-21 19:42:03,464 [wrapper] Test setup, not cleaning
[2025-11-21 20:42:03] 2025-11-21 19:42:03,467 [wrapper] apfmon messages muted
[2025-11-21 20:42:03] 2025-11-21 19:42:03,469 [wrapper] ==== wrapper stdout END ====
[2025-11-21 20:42:03] 2025-11-21 19:42:03,472 [wrapper] ==== wrapper stderr END ====
[2025-11-21 20:42:03]  *** Error codes and diagnostics ***
[2025-11-21 20:42:03]     "exeErrorCode": 65,
[2025-11-21 20:42:03]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 20:42:03]     "pilotErrorCode": 1305,
[2025-11-21 20:42:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 20:42:03]  *** Listing of results directory ***
[2025-11-21 20:42:03] total 406536
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc      5112 Nov 21 05:51 queuedata.json
[2025-11-21 20:42:03] -rwx------ 1 boinc boinc     36292 Nov 21 05:51 runpilot2-wrapper.sh
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc       100 Nov 21 20:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 20:42:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 20:37 run_atlas
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc       105 Nov 21 20:37 job.xml
[2025-11-21 20:42:03] -rw-r--r-- 2 boinc boinc 412087694 Nov 21 20:37 EVNT.47493127._002199.pool.root.1
[2025-11-21 20:42:03] drwxrwx--x 2 boinc boinc      4096 Nov 21 20:37 shared
[2025-11-21 20:42:03] -rw-r--r-- 2 boinc boinc    590103 Nov 21 20:37 input.tar.gz
[2025-11-21 20:42:03] -rw-r--r-- 2 boinc boinc     15847 Nov 21 20:37 start_atlas.sh
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc         0 Nov 21 20:37 boinc_setup_complete
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc      6194 Nov 21 20:37 init_data.xml
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc         0 Nov 21 20:37 boinc_lockfile
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc      2786 Nov 21 20:37 pandaJob.out
[2025-11-21 20:42:03] -rw------- 1 boinc boinc    989798 Nov 21 20:37 agis_schedconf.cvmfs.json
[2025-11-21 20:42:03] -rw------- 1 boinc boinc   1526164 Nov 21 20:37 agis_ddmendpoints.agis.ALL.json
[2025-11-21 20:42:03] drwx------ 5 boinc boinc      4096 Nov 21 20:37 pilot3
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc       523 Nov 21 20:38 boinc_task_state.xml
[2025-11-21 20:42:03] -rw------- 1 boinc boinc       939 Nov 21 20:39 memory_monitor_summary.json
[2025-11-21 20:42:03] -rw------- 1 boinc boinc     55742 Nov 21 20:39 log.47533967._001707.job.log.tgz.1
[2025-11-21 20:42:03] -rw------- 1 boinc boinc        95 Nov 21 20:40 pilot_heartbeat.json
[2025-11-21 20:42:03] -rw------- 1 boinc boinc      8413 Nov 21 20:41 heartbeat.json
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc      8192 Nov 21 20:41 boinc_mmap_file
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc        23 Nov 21 20:41 wrapper_checkpoint.txt
[2025-11-21 20:42:03] -rw------- 1 boinc boinc      4752 Nov 21 20:42 pilotlog.txt
[2025-11-21 20:42:03] -rw------- 1 boinc boinc     93855 Nov 21 20:42 log.47533967._001707.job.log.1
[2025-11-21 20:42:03] -rw------- 1 boinc boinc       186 Nov 21 20:42 output.list
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc       620 Nov 21 20:42 runtime_log
[2025-11-21 20:42:03] -rw------- 1 boinc boinc    174080 Nov 21 20:42 result.tar.gz
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc      8744 Nov 21 20:42 runtime_log.err
[2025-11-21 20:42:03] -rw------- 1 boinc boinc       649 Nov 21 20:42 WdmMDmdIYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi2IKDmDKxPHn.diag
[2025-11-21 20:42:03] -rw-r--r-- 1 boinc boinc      7789 Nov 21 20:42 stderr.txt
[2025-11-21 20:42:03] No HITS result produced
[2025-11-21 20:42:03]  *** Contents of shared directory: ***
[2025-11-21 20:42:03] total 403204
[2025-11-21 20:42:03] -rw-r--r-- 2 boinc boinc 412087694 Nov 21 20:37 ATLAS.root_0
[2025-11-21 20:42:03] -rw-r--r-- 2 boinc boinc    590103 Nov 21 20:37 input.tar.gz
[2025-11-21 20:42:03] -rw-r--r-- 2 boinc boinc     15847 Nov 21 20:37 start_atlas.sh
[2025-11-21 20:42:03] -rw------- 1 boinc boinc    174080 Nov 21 20:42 result.tar.gz
20:42:05 (3468458): run_atlas exited; CPU time 31.663569
20:42:05 (3468458): called boinc_finish(0)

</stderr_txt>
]]>

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