Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:31:58 (3718349): wrapper (7.7.26015): starting
21:31:58 (3718349): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 21:31:58] Arguments: --nthreads 3
[2025-11-21 21:31:58] Threads: 3
[2025-11-21 21:31:58] Checking for CVMFS
[2025-11-21 21:31:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:31:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:31:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:31:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:31:59] 2.9.2.0 16720 1898 77804 153142 1 88 34556949 36864001 0 130560 0 23710576 99.999 46908 1904 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 21:31:59] CVMFS is ok
[2025-11-21 21:31:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:31:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 21:31:59] Further information can be found at the LHC@home message board.
[2025-11-21 21:31:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:31:59] Checking for apptainer binary...
[2025-11-21 21:31:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:31:59] Running /usr/bin/apptainer --version
[2025-11-21 21:31:59] apptainer version 1.4.1-1.1
[2025-11-21 21:31:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:31:59] thA335
[2025-11-21 21:31:59] apptainer works
[2025-11-21 21:31:59] Set ATHENA_PROC_NUMBER=3
[2025-11-21 21:31:59] Set ATHENA_CORE_NUMBER=3
[2025-11-21 21:31:59] Starting ATLAS job with PandaID=6893886568
[2025-11-21 21:31:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:36:17]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:36:17] 2025-11-21 20:35:28,985 | INFO     | update_server=False
[2025-11-21 21:36:17] 2025-11-21 20:35:28,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:36:17] 2025-11-21 20:35:28,985 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:36:17] 2025-11-21 20:35:28,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:36:17] 2025-11-21 20:35:28,985 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:36:17] 2025-11-21 20:35:29,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:36:17] 2025-11-21 20:35:29,527 | INFO     | aborting loop
[2025-11-21 21:36:17] 2025-11-21 20:35:29,628 | INFO     | all data control threads have been joined
[2025-11-21 21:36:17] 2025-11-21 20:35:29,631 | INFO     | all payload control threads have been joined
[2025-11-21 21:36:17] 2025-11-21 20:35:29,990 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:29,991 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,409 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,454 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,533 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,604 | INFO     | [job] validate thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,605 | INFO     | all job control threads have been joined
[2025-11-21 21:36:17] 2025-11-21 20:35:30,634 | INFO     | [data] control thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,636 | INFO     | [payload] control thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,692 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,738 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,988 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:30,991 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:31,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:31,483 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:31,611 | INFO     | [job] control thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:32,992 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:36:17] 2025-11-21 20:35:59,985 | INFO     | PID=3722082 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 21:36:17] 2025-11-21 20:35:59,985 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:36:17] 2025-11-21 20:35:59,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:36:17] 2025-11-21 20:35:59,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:36:17] 2025-11-21 20:36:10,827 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:36:17] 2025-11-21 20:36:12,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777233733440)>', '<ExcThread(monitor, started 139776598460160)>']
[2025-11-21 21:36:17] 2025-11-21 20:36:13,054 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:36:17] 2025-11-21 20:36:13,055 | INFO     | [monitor] control thread has ended
[2025-11-21 21:36:17] 2025-11-21 20:36:17,551 | INFO     | all workflow threads have been joined
[2025-11-21 21:36:17] 2025-11-21 20:36:17,551 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:36:17] 2025-11-21 20:36:17,552 | INFO     | traces error code: 0
[2025-11-21 21:36:17] 2025-11-21 20:36:17,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:36:17] 2025-11-21 20:36:17,598 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:36:17] 2025-11-21 20:36:17,602 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:36:17] 2025-11-21 20:36:17,605 [wrapper] pilotpid: 3722082
[2025-11-21 21:36:17] 2025-11-21 20:36:17,608 [wrapper] Pilot exit status: 0
[2025-11-21 21:36:17] 2025-11-21 20:36:17,615 [wrapper] pandaids: 6893886568
[2025-11-21 21:36:17] 2025-11-21 20:36:17,633 [wrapper] cleanup supervisor_pilot 3722088 3722083
[2025-11-21 21:36:17] 2025-11-21 20:36:17,636 [wrapper] Test setup, not cleaning
[2025-11-21 21:36:17] 2025-11-21 20:36:17,639 [wrapper] apfmon messages muted
[2025-11-21 21:36:17] 2025-11-21 20:36:17,641 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:36:17] 2025-11-21 20:36:17,644 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:36:17]  *** Error codes and diagnostics ***
[2025-11-21 21:36:17]     "exeErrorCode": 65,
[2025-11-21 21:36:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 21:36:17]     "pilotErrorCode": 1305,
[2025-11-21 21:36:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 21:36:17]  *** Listing of results directory ***
[2025-11-21 21:36:17] total 406460
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc    576529 Nov 20 23:26 pilot3.tar.gz
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc      5112 Nov 20 23:44 queuedata.json
[2025-11-21 21:36:17] -rwx------ 1 boinc boinc     36292 Nov 20 23:47 runpilot2-wrapper.sh
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc       100 Nov 21 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:36:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 21:31 run_atlas
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc       105 Nov 21 21:31 job.xml
[2025-11-21 21:36:17] -rw-r--r-- 2 boinc boinc 412012087 Nov 21 21:31 EVNT.47493127._000957.pool.root.1
[2025-11-21 21:36:17] -rw-r--r-- 2 boinc boinc    590102 Nov 21 21:31 input.tar.gz
[2025-11-21 21:36:17] -rw-r--r-- 2 boinc boinc     15847 Nov 21 21:31 start_atlas.sh
[2025-11-21 21:36:17] drwxrwx--x 2 boinc boinc      4096 Nov 21 21:31 shared
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc         0 Nov 21 21:31 boinc_setup_complete
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc      6194 Nov 21 21:31 init_data.xml
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc         0 Nov 21 21:31 boinc_lockfile
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc      2786 Nov 21 21:31 pandaJob.out
[2025-11-21 21:36:17] -rw------- 1 boinc boinc    989798 Nov 21 21:32 agis_schedconf.cvmfs.json
[2025-11-21 21:36:17] -rw------- 1 boinc boinc   1526164 Nov 21 21:32 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:36:17] drwx------ 5 boinc boinc      4096 Nov 21 21:32 pilot3
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc       524 Nov 21 21:33 boinc_task_state.xml
[2025-11-21 21:36:17] -rw------- 1 boinc boinc       965 Nov 21 21:33 memory_monitor_summary.json
[2025-11-21 21:36:17] -rw------- 1 boinc boinc     55635 Nov 21 21:33 log.47523449._009568.job.log.tgz.1
[2025-11-21 21:36:17] -rw------- 1 boinc boinc        95 Nov 21 21:35 pilot_heartbeat.json
[2025-11-21 21:36:17] -rw------- 1 boinc boinc      8408 Nov 21 21:35 heartbeat.json
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc      8192 Nov 21 21:36 boinc_mmap_file
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc        23 Nov 21 21:36 wrapper_checkpoint.txt
[2025-11-21 21:36:17] -rw------- 1 boinc boinc      4752 Nov 21 21:36 pilotlog.txt
[2025-11-21 21:36:17] -rw------- 1 boinc boinc     93814 Nov 21 21:36 log.47523449._009568.job.log.1
[2025-11-21 21:36:17] -rw------- 1 boinc boinc       186 Nov 21 21:36 output.list
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc       620 Nov 21 21:36 runtime_log
[2025-11-21 21:36:17] -rw------- 1 boinc boinc    174080 Nov 21 21:36 result.tar.gz
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc      8744 Nov 21 21:36 runtime_log.err
[2025-11-21 21:36:17] -rw------- 1 boinc boinc       649 Nov 21 21:36 cjcNDmJcSg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0dIKDmtUH8pm.diag
[2025-11-21 21:36:17] -rw-r--r-- 1 boinc boinc      7789 Nov 21 21:36 stderr.txt
[2025-11-21 21:36:17] No HITS result produced
[2025-11-21 21:36:17]  *** Contents of shared directory: ***
[2025-11-21 21:36:17] total 403128
[2025-11-21 21:36:17] -rw-r--r-- 2 boinc boinc 412012087 Nov 21 21:31 ATLAS.root_0
[2025-11-21 21:36:17] -rw-r--r-- 2 boinc boinc    590102 Nov 21 21:31 input.tar.gz
[2025-11-21 21:36:17] -rw-r--r-- 2 boinc boinc     15847 Nov 21 21:31 start_atlas.sh
[2025-11-21 21:36:17] -rw------- 1 boinc boinc    174080 Nov 21 21:36 result.tar.gz
21:36:19 (3718349): run_atlas exited; CPU time 31.751652
21:36:19 (3718349): called boinc_finish(0)

</stderr_txt>
]]>

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