Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:56:18 (4138183): wrapper (7.7.26015): starting
10:56:18 (4138183): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 10:56:18] Arguments: --nthreads 12
[2025-11-21 10:56:18] Threads: 12
[2025-11-21 10:56:18] Checking for CVMFS
[2025-11-21 10:56:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 10:56:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 10:56:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 10:56:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 10:56:18] 2.11.5.0 3591329 21522 235752 153139 2 462 30646734 45568000 21311 130560 0 187512134 99.757 138279699 26404 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-21 10:56:18] CVMFS is ok
[2025-11-21 10:56:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 10:56:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 10:56:18] Further information can be found at the LHC@home message board.
[2025-11-21 10:56:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 10:56:18] Checking for apptainer binary...
[2025-11-21 10:56:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 10:56:18] Running /usr/bin/apptainer --version
[2025-11-21 10:56:18] apptainer version 1.4.1-1.el9
[2025-11-21 10:56:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 10:56:18] wns0096.triumf.lcg
[2025-11-21 10:56:18] apptainer works
[2025-11-21 10:56:18] Set ATHENA_PROC_NUMBER=12
[2025-11-21 10:56:18] Set ATHENA_CORE_NUMBER=12
[2025-11-21 10:56:18] Starting ATLAS job with PandaID=6894289667
[2025-11-21 10:56:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:00:35]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 11:00:35] 2025-11-21 18:59:46,996 | WARNING  | wrong length of table data, x=[1763751413.0], y=[2396.0] (must be same and length>=4)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | could have reported an average CPU frequency of 2682 MHz (4 samples)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | ..............................
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . Timing measurements:
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . get job = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . initial setup = 3 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . payload setup = 5 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . stage-in = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . payload execution = 51 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . stage-out = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . log creation = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | ..............................
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894289667/pilotlog.txt
[2025-11-21 11:00:35] 2025-11-21 18:59:47,009 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 11:00:35] - Log from pilotlog.txt -
[2025-11-21 11:00:35] 2025-11-21 18:59:46,993 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894289667/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | INFO     | extracted standard info from prmon json
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 11:00:35] 2025-11-21 18:59:46,996 | WARNING  | wrong length of table data, x=[1763751413.0], y=[2396.0] (must be same and length>=4)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | could have reported an average CPU frequency of 2682 MHz (4 samples)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | ..............................
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . Timing measurements:
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . get job = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . initial setup = 3 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . payload setup = 5 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . stage-in = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . payload execution = 51 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . stage-out = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . log creation = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | ..............................
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894289667/pilotlog.txt
[2025-11-21 11:00:35] 2025-11-21 18:59:47,009 | WARNING  | 
[2025-11-21 11:00:35] [begin log extracts]
[2025-11-21 11:00:35] - Log from pilotlog.txt -
[2025-11-21 11:00:35] 2025-11-21 18:59:46,993 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6894289667/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | INFO     | extracted standard info from prmon json
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 11:00:35] 2025-11-21 18:59:46,995 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 11:00:35] 2025-11-21 18:59:46,996 | WARNING  | wrong length of table data, x=[1763751413.0], y=[2396.0] (must be same and length>=4)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | could have reported an average CPU frequency of 2682 MHz (4 samples)
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | ..............................
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . Timing measurements:
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . get job = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . initial setup = 3 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,997 | INFO     | . payload setup = 5 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . stage-in = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . payload execution = 51 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . stage-out = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | . log creation = 0 s
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | ..............................
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 11:00:35] 2025-11-21 18:59:46,998 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6894289667/pilotlog.txt
[2025-11-21 11:00:35] [end log extracts]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,010 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 11:00:35] 2025-11-21 18:59:47,010 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | 
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | job summary report
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | --------------------------------------------------
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | PanDA job id: 6894289667
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | task id: 47533967
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 10:57:36,549 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | pilot state: failed 
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | transexitcode: 65
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | exeerrorcode: 65
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | exitcode: 65
[2025-11-21 11:00:35] 2025-11-21 18:59:47,319 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | cpuconsumptiontime: 43 s
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | nevents: 0
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | neventsw: 0
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | pid: 4148489
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | pgrp: 4148489
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | corecount: 12
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | event service: False
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | sizes: {0: 2298753, 4: 2299015, 11: 2299043, 59: 2324572, 60: 2324548, 61: 2328866, 63: 2329022, 183: 2329188}
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | --------------------------------------------------
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | 
[2025-11-21 11:00:35] 2025-11-21 18:59:47,320 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-21 11:00:35] 2025-11-21 18:59:47,336 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,336 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,336 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,336 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,336 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | job 6894289667 has completed (purged errors)
[2025-11-21 11:00:35] 2025-11-21 18:59:47,337 | INFO     | overall cleanup function is called
[2025-11-21 11:00:35] 2025-11-21 18:59:48,342 | INFO     | --- collectZombieJob: --- 10, [4148489]
[2025-11-21 11:00:35] 2025-11-21 18:59:48,343 | INFO     | zombie collector waiting for pid 4148489
[2025-11-21 11:00:35] 2025-11-21 18:59:48,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 11:00:35] 2025-11-21 18:59:48,343 | INFO     | collected zombie processes
[2025-11-21 11:00:35] 2025-11-21 18:59:48,343 | INFO     | will attempt to kill all subprocesses of pid=4148489
[2025-11-21 11:00:35] 2025-11-21 18:59:48,527 | INFO     | process IDs to be killed: [4148489] (in reverse order)
[2025-11-21 11:00:35] 2025-11-21 18:59:48,599 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 11:00:35] 2025-11-21 18:59:48,599 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 11:00:35] 2025-11-21 18:59:48,608 | INFO     | did not find any defunct processes belonging to 4148489
[2025-11-21 11:00:35] 2025-11-21 18:59:48,615 | INFO     | did not find any defunct processes belonging to 4148489
[2025-11-21 11:00:35] 2025-11-21 18:59:48,616 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:00:35] 2025-11-21 18:59:48,617 | INFO     | ready for new job
[2025-11-21 11:00:35] 2025-11-21 18:59:48,617 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 11:00:35] 2025-11-21 18:59:48,618 | INFO     | ***************************************
[2025-11-21 11:00:35] 2025-11-21 18:59:48,618 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 11:00:35] 2025-11-21 18:59:48,618 | INFO     | ***************************************
[2025-11-21 11:00:35] 2025-11-21 18:59:48,618 | INFO     | 
[2025-11-21 11:00:35] 2025-11-21 18:59:48,620 | INFO     | architecture information:
[2025-11-21 11:00:35] 2025-11-21 18:59:48,621 | INFO     | executing command: cat /etc/os-release
[2025-11-21 11:00:35] 2025-11-21 18:59:48,631 | INFO     | cat /etc/os-release:
[2025-11-21 11:00:35] NAME="CentOS Linux"
[2025-11-21 11:00:35] VERSION="7 (Core)"
[2025-11-21 11:00:35] ID="centos"
[2025-11-21 11:00:35] ID_LIKE="rhel fedora"
[2025-11-21 11:00:35] VERSION_ID="7"
[2025-11-21 11:00:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 11:00:35] ANSI_COLOR="0;31"
[2025-11-21 11:00:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 11:00:35] HOME_URL="https://www.centos.org/"
[2025-11-21 11:00:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 11:00:35] 
[2025-11-21 11:00:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 11:00:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 11:00:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 11:00:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 11:00:35] 
[2025-11-21 11:00:35] 2025-11-21 18:59:48,632 | INFO     | ***************************************
[2025-11-21 11:00:35] 2025-11-21 18:59:49,135 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-21 11:00:35] 2025-11-21 18:59:49,147 | INFO     | sufficient remaining disk space (2058225713152 B)
[2025-11-21 11:00:35] 2025-11-21 18:59:49,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:00:35] 2025-11-21 18:59:49,148 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:00:35] 2025-11-21 18:59:49,148 | INFO     | update_server=False
[2025-11-21 11:00:35] 2025-11-21 18:59:49,148 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:00:35] 2025-11-21 18:59:49,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:00:35] 2025-11-21 18:59:49,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:00:35] 2025-11-21 18:59:49,156 | INFO     | aborting loop
[2025-11-21 11:00:35] 2025-11-21 18:59:49,694 | INFO     | all data control threads have been joined
[2025-11-21 11:00:35] 2025-11-21 18:59:50,095 | INFO     | all job control threads have been joined
[2025-11-21 11:00:35] 2025-11-21 18:59:50,153 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:50,162 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:50,249 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:50,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:00:35] 2025-11-21 18:59:50,526 | INFO     | all payload control threads have been joined
[2025-11-21 11:00:35] 2025-11-21 18:59:50,702 | INFO     | [data] control thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:50,799 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:50,867 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:50,905 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:51,101 | INFO     | [job] control thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:51,153 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:51,322 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:51,413 | INFO     | [job] validate thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:51,531 | INFO     | [payload] control thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:51,538 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:51,615 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:52,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:00:35] 2025-11-21 18:59:53,085 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:00:35] 2025-11-21 18:59:54,477 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:00:35] 2025-11-21 19:00:18,987 | INFO     | PID=4141856 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 11:00:35] 2025-11-21 19:00:18,988 | INFO     | .. there are 28 such processes running
[2025-11-21 11:00:35] 2025-11-21 19:00:18,988 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:00:35] 2025-11-21 19:00:18,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:00:35] 2025-11-21 19:00:18,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:00:35] 2025-11-21 19:00:28,617 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:00:35] 2025-11-21 19:00:30,430 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827600791360)>', '<ExcThread(monitor, started 139827072718592)>']
[2025-11-21 11:00:35] 2025-11-21 19:00:31,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:00:35] 2025-11-21 19:00:31,051 | INFO     | [monitor] control thread has ended
[2025-11-21 11:00:35] 2025-11-21 19:00:35,455 | INFO     | all workflow threads have been joined
[2025-11-21 11:00:35] 2025-11-21 19:00:35,455 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:00:35] 2025-11-21 19:00:35,455 | INFO     | traces error code: 0
[2025-11-21 11:00:35] 2025-11-21 19:00:35,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:00:35] 2025-11-21 19:00:35,575 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:00:35] 2025-11-21 19:00:35,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:00:35] 2025-11-21 19:00:35,579 [wrapper] pilotpid: 4141856
[2025-11-21 11:00:35] 2025-11-21 19:00:35,582 [wrapper] Pilot exit status: 0
[2025-11-21 11:00:35] 2025-11-21 19:00:35,590 [wrapper] pandaids: 6894289667
[2025-11-21 11:00:35] 2025-11-21 19:00:35,635 [wrapper] cleanup supervisor_pilot 4141863 4141857
[2025-11-21 11:00:35] 2025-11-21 19:00:35,637 [wrapper] Test setup, not cleaning
[2025-11-21 11:00:35] 2025-11-21 19:00:35,640 [wrapper] apfmon messages muted
[2025-11-21 11:00:35] 2025-11-21 19:00:35,642 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:00:35] 2025-11-21 19:00:35,644 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:00:35]  *** Error codes and diagnostics ***
[2025-11-21 11:00:35]     "exeErrorCode": 65,
[2025-11-21 11:00:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-21 11:00:35]     "pilotErrorCode": 1305,
[2025-11-21 11:00:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-21 11:00:35]  *** Listing of results directory ***
[2025-11-21 11:00:35] total 403644
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc    576529 Nov 21 03:23 pilot3.tar.gz
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc      5112 Nov 21 03:26 queuedata.json
[2025-11-21 11:00:35] -rwx------. 1 boinc boinc     36292 Nov 21 03:28 runpilot2-wrapper.sh
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc       100 Nov 21 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:00:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 10:56 run_atlas
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc       105 Nov 21 10:56 job.xml
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc      6595 Nov 21 10:56 init_data.xml
[2025-11-21 11:00:35] -rw-r--r--. 2 boinc boinc 409132678 Nov 21 10:56 EVNT.47493127._002409.pool.root.1
[2025-11-21 11:00:35] -rw-r--r--. 2 boinc boinc     15847 Nov 21 10:56 start_atlas.sh
[2025-11-21 11:00:35] drwxrwx--x. 2 boinc boinc      4096 Nov 21 10:56 shared
[2025-11-21 11:00:35] -rw-r--r--. 2 boinc boinc    590109 Nov 21 10:56 input.tar.gz
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc         0 Nov 21 10:56 boinc_lockfile
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc      2785 Nov 21 10:56 pandaJob.out
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc    989798 Nov 21 10:56 agis_schedconf.cvmfs.json
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc   1526164 Nov 21 10:56 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:00:35] drwx------. 5 boinc boinc      4096 Nov 21 10:56 pilot3
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc       523 Nov 21 10:57 boinc_task_state.xml
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc       956 Nov 21 10:57 memory_monitor_summary.json
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc     47945 Nov 21 10:57 log.47533967._003804.job.log.tgz.1
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc        95 Nov 21 10:59 pilot_heartbeat.json
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc     10327 Nov 21 10:59 heartbeat.json
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc      4823 Nov 21 11:00 pilotlog.txt
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc        23 Nov 21 11:00 wrapper_checkpoint.txt
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc      8192 Nov 21 11:00 boinc_mmap_file
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc     93601 Nov 21 11:00 log.47533967._003804.job.log.1
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc       186 Nov 21 11:00 output.list
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc       620 Nov 21 11:00 runtime_log
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc    163840 Nov 21 11:00 result.tar.gz
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc      8636 Nov 21 11:00 runtime_log.err
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc       645 Nov 21 11:00 MyqKDmfUeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpLJKDmPcb3Wm.diag
[2025-11-21 11:00:35] -rw-r--r--. 1 boinc boinc     22407 Nov 21 11:00 stderr.txt
[2025-11-21 11:00:35] No HITS result produced
[2025-11-21 11:00:35]  *** Contents of shared directory: ***
[2025-11-21 11:00:35] total 400304
[2025-11-21 11:00:35] -rw-r--r--. 2 boinc boinc 409132678 Nov 21 10:56 ATLAS.root_0
[2025-11-21 11:00:35] -rw-r--r--. 2 boinc boinc     15847 Nov 21 10:56 start_atlas.sh
[2025-11-21 11:00:35] -rw-r--r--. 2 boinc boinc    590109 Nov 21 10:56 input.tar.gz
[2025-11-21 11:00:35] -rw-------. 1 boinc boinc    163840 Nov 21 11:00 result.tar.gz
11:00:37 (4138183): run_atlas exited; CPU time 41.837741
11:00:37 (4138183): called boinc_finish(0)

</stderr_txt>
]]>

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