Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:11:09 (8549): wrapper (7.7.26015): starting
10:11:09 (8549): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 10:11:09] Arguments: --nthreads 8
[2025-11-24 10:11:09] Threads: 8
[2025-11-24 10:11:09] Checking for CVMFS
[2025-11-24 10:11:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:11:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:11:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:11:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:11:09] 2.11.2.0 22848 282257 139116 153239 1 85 23822137 25165825 94 130560 10 144083784 99.886 77076472 2924 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 10:11:09] CVMFS is ok
[2025-11-24 10:11:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:11:09] Checking for apptainer binary...
[2025-11-24 10:11:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:11:09] Running /usr/bin/apptainer --version
[2025-11-24 10:11:09] apptainer version 1.3.2-1.el7
[2025-11-24 10:11:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:11:10] cg-vwn482.simple-grid.lan
[2025-11-24 10:11:10] apptainer works
[2025-11-24 10:11:10] Set ATHENA_PROC_NUMBER=8
[2025-11-24 10:11:10] Set ATHENA_CORE_NUMBER=8
[2025-11-24 10:11:10] Starting ATLAS job with PandaID=6894262091
[2025-11-24 10:11:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:13:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:13:39] 2025-11-25 05:12:47,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:13:39] 2025-11-25 05:12:48,399 | INFO     | time since job start (72083s) is within the limit (172800.0s)
[2025-11-25 06:13:39] 2025-11-25 05:12:49,860 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 06:13:39] 2025-11-25 05:12:49,863 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-25 06:13:39] 2025-11-25 05:12:49,866 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6894262091/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 06:13:39] 2025-11-25 05:12:49,866 | INFO     | extracted standard info from prmon json
[2025-11-25 06:13:39] 2025-11-25 05:12:49,867 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 06:13:39] 2025-11-25 05:12:49,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 06:13:39] 2025-11-25 05:12:49,888 | INFO     | fitting pss+swap vs Time
[2025-11-25 06:13:39] 2025-11-25 05:12:49,890 | INFO     | sum of square deviations: 510780423086.5072
[2025-11-25 06:13:39] 2025-11-25 05:12:49,927 | INFO     | sum of deviations: 1748368928823.134
[2025-11-25 06:13:39] 2025-11-25 05:12:49,927 | INFO     | mean x: 1764011506.964437
[2025-11-25 06:13:39] 2025-11-25 05:12:49,927 | INFO     | mean y: 2890923.050804403
[2025-11-25 06:13:39] 2025-11-25 05:12:49,927 | INFO     | intersect: -6035208364.753646
[2025-11-25 06:13:39] 2025-11-25 05:12:49,929 | INFO     | chi2: 6.731071632246857
[2025-11-25 06:13:39] 2025-11-25 05:12:49,931 | INFO     | sum of square deviations: 504320816796.83606
[2025-11-25 06:13:39] 2025-11-25 05:12:49,969 | INFO     | sum of deviations: 2148205764113.6108
[2025-11-25 06:13:39] 2025-11-25 05:12:49,969 | INFO     | mean x: 1764011354.4685373
[2025-11-25 06:13:39] 2025-11-25 05:12:49,970 | INFO     | mean y: 2900363.5705782315
[2025-11-25 06:13:39] 2025-11-25 05:12:49,970 | INFO     | intersect: -7511085245.23236
[2025-11-25 06:13:39] 2025-11-25 05:12:49,971 | INFO     | chi2: 3.6382673064050848
[2025-11-25 06:13:39] 2025-11-25 05:12:49,971 | INFO     | current chi2=3.6382673064050848 (change=45.94817132869202 %)
[2025-11-25 06:13:39] 2025-11-25 05:12:49,973 | INFO     | sum of square deviations: 497915909207.1259
[2025-11-25 06:13:39] 2025-11-25 05:12:50,011 | INFO     | sum of deviations: 2315000053268.0576
[2025-11-25 06:13:39] 2025-11-25 05:12:50,011 | INFO     | mean x: 1764011201.972673
[2025-11-25 06:13:39] 2025-11-25 05:12:50,012 | INFO     | mean y: 2904333.251921435
[2025-11-25 06:13:39] 2025-11-25 05:12:50,012 | INFO     | intersect: -8198653301.319326
[2025-11-25 06:13:39] 2025-11-25 05:12:50,013 | INFO     | chi2: 2.9911400161063972
[2025-11-25 06:13:39] 2025-11-25 05:12:50,013 | INFO     | current chi2=2.9911400161063972 (change=17.786688986799707 %)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,013 | INFO     | right removable region: 1170
[2025-11-25 06:13:39] 2025-11-25 05:12:50,015 | INFO     | sum of square deviations: 504320193804.77295
[2025-11-25 06:13:39] 2025-11-25 05:12:50,052 | INFO     | sum of deviations: 1405777323888.9468
[2025-11-25 06:13:39] 2025-11-25 05:12:50,052 | INFO     | mean x: 1764011659.4676871
[2025-11-25 06:13:39] 2025-11-25 05:12:50,052 | INFO     | mean y: 2899002.3801020407
[2025-11-25 06:13:39] 2025-11-25 05:12:50,053 | INFO     | intersect: -4914230274.650875
[2025-11-25 06:13:39] 2025-11-25 05:12:50,054 | INFO     | chi2: 4.250602890983684
[2025-11-25 06:13:39] 2025-11-25 05:12:50,054 | INFO     | current chi2=4.250602890983684 (change=36.851022790782324 %)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,056 | INFO     | sum of square deviations: 497914807062.894
[2025-11-25 06:13:39] 2025-11-25 05:12:50,090 | INFO     | sum of deviations: 1310007140034.8643
[2025-11-25 06:13:39] 2025-11-25 05:12:50,090 | INFO     | mean x: 1764011811.969257
[2025-11-25 06:13:39] 2025-11-25 05:12:50,090 | INFO     | mean y: 2901281.8018787364
[2025-11-25 06:13:39] 2025-11-25 05:12:50,091 | INFO     | intersect: -4638189997.280465
[2025-11-25 06:13:39] 2025-11-25 05:12:50,092 | INFO     | chi2: 4.134875636992624
[2025-11-25 06:13:39] 2025-11-25 05:12:50,092 | INFO     | current chi2=4.134875636992624 (change=2.7226079913637387 %)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,092 | INFO     | left removable region: 20
[2025-11-25 06:13:39] 2025-11-25 05:12:50,094 | INFO     | sum of square deviations: 471605149375.11926
[2025-11-25 06:13:39] 2025-11-25 05:12:50,154 | INFO     | sum of deviations: 1756879285333.4397
[2025-11-25 06:13:39] 2025-11-25 05:12:50,154 | INFO     | mean x: 1764011781.481739
[2025-11-25 06:13:39] 2025-11-25 05:12:50,154 | INFO     | mean y: 2918560.7591304346
[2025-11-25 06:13:39] 2025-11-25 05:12:50,154 | INFO     | intersect: -6568586780.257211
[2025-11-25 06:13:39] 2025-11-25 05:12:50,156 | INFO     | chi2: 0.2643036167033338
[2025-11-25 06:13:39] 2025-11-25 05:12:50,156 | INFO     | current memory leak: 3.73 B/s (using 1150 data points, chi2=0.26)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,162 | INFO     | could have reported an average CPU frequency of 2249 MHz (40 samples)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,162 | INFO     | ..............................
[2025-11-25 06:13:39] 2025-11-25 05:12:50,163 | INFO     | . Timing measurements:
[2025-11-25 06:13:39] 2025-11-25 05:12:50,163 | INFO     | . get job = 0 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,163 | INFO     | . initial setup = 2 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,163 | INFO     | . payload setup = 7 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,163 | INFO     | . stage-in = 0 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,163 | INFO     | . payload execution = 72040 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,164 | INFO     | . stage-out = 5 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,164 | INFO     | . log creation = 0 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,164 | INFO     | ..............................
[2025-11-25 06:13:39] 2025-11-25 05:12:50,298 | INFO     | 
[2025-11-25 06:13:39] 2025-11-25 05:12:50,298 | INFO     | job summary report
[2025-11-25 06:13:39] 2025-11-25 05:12:50,298 | INFO     | --------------------------------------------------
[2025-11-25 06:13:39] 2025-11-25 05:12:50,298 | INFO     | PanDA job id: 6894262091
[2025-11-25 06:13:39] 2025-11-25 05:12:50,298 | INFO     | task id: 47533967
[2025-11-25 06:13:39] 2025-11-25 05:12:50,298 | INFO     | errors: (none)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,298 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:13:39] 2025-11-25 05:12:50,299 | INFO     | pilot state: finished 
[2025-11-25 06:13:39] 2025-11-25 05:12:50,299 | INFO     | transexitcode: 0
[2025-11-25 06:13:39] 2025-11-25 05:12:50,299 | INFO     | exeerrorcode: 0
[2025-11-25 06:13:39] 2025-11-25 05:12:50,299 | INFO     | exeerrordiag: 
[2025-11-25 06:13:39] 2025-11-25 05:12:50,299 | INFO     | exitcode: 0
[2025-11-25 06:13:39] 2025-11-25 05:12:50,299 | INFO     | exitmsg: OK
[2025-11-25 06:13:39] 2025-11-25 05:12:50,299 | INFO     | cpuconsumptiontime: 312730 s
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | nevents: 1000
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | neventsw: 0
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | pid: 18694
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | pgrp: 18694
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | corecount: 8
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | event service: False
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | sizes: {0: 2297978, 1: 2298834, 6: 2299096, 12: 2299124, 72051: 2354804, 72058: 2364589, 72059: 2364773, 72069: 2365019}
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | --------------------------------------------------
[2025-11-25 06:13:39] 2025-11-25 05:12:50,300 | INFO     | 
[2025-11-25 06:13:39] 2025-11-25 05:12:50,301 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-25 06:13:39] 2025-11-25 05:12:50,400 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,400 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,400 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,400 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,400 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,400 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,402 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,402 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,402 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,402 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:13:39] 2025-11-25 05:12:50,402 | INFO     | job 6894262091 has completed (purged errors)
[2025-11-25 06:13:39] 2025-11-25 05:12:50,402 | INFO     | overall cleanup function is called
[2025-11-25 06:13:39] 2025-11-25 05:12:51,419 | INFO     | --- collectZombieJob: --- 10, [18694]
[2025-11-25 06:13:39] 2025-11-25 05:12:51,420 | INFO     | zombie collector waiting for pid 18694
[2025-11-25 06:13:39] 2025-11-25 05:12:51,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:13:39] 2025-11-25 05:12:51,420 | INFO     | collected zombie processes
[2025-11-25 06:13:39] 2025-11-25 05:12:51,420 | INFO     | will attempt to kill all subprocesses of pid=18694
[2025-11-25 06:13:39] 2025-11-25 05:12:51,520 | INFO     | process IDs to be killed: [18694] (in reverse order)
[2025-11-25 06:13:39] 2025-11-25 05:12:51,592 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:13:39] 2025-11-25 05:12:51,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:13:39] 2025-11-25 05:12:51,596 | INFO     | did not find any defunct processes belonging to 18694
[2025-11-25 06:13:39] 2025-11-25 05:12:51,599 | INFO     | did not find any defunct processes belonging to 18694
[2025-11-25 06:13:39] 2025-11-25 05:12:51,601 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:13:39] 2025-11-25 05:12:51,601 | INFO     | ready for new job
[2025-11-25 06:13:39] 2025-11-25 05:12:51,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:13:39] 2025-11-25 05:12:51,607 | INFO     | ***************************************
[2025-11-25 06:13:39] 2025-11-25 05:12:51,607 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:13:39] 2025-11-25 05:12:51,607 | INFO     | ***************************************
[2025-11-25 06:13:39] 2025-11-25 05:12:51,607 | INFO     | 
[2025-11-25 06:13:39] 2025-11-25 05:12:51,608 | INFO     | pilot is running in a VM
[2025-11-25 06:13:39] 2025-11-25 05:12:51,608 | INFO     | architecture information:
[2025-11-25 06:13:39] 2025-11-25 05:12:51,608 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:13:39] 2025-11-25 05:12:51,645 | INFO     | cat /etc/os-release:
[2025-11-25 06:13:39] NAME="CentOS Linux"
[2025-11-25 06:13:39] VERSION="7 (Core)"
[2025-11-25 06:13:39] ID="centos"
[2025-11-25 06:13:39] ID_LIKE="rhel fedora"
[2025-11-25 06:13:39] VERSION_ID="7"
[2025-11-25 06:13:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:13:39] ANSI_COLOR="0;31"
[2025-11-25 06:13:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:13:39] HOME_URL="https://www.centos.org/"
[2025-11-25 06:13:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:13:39] 
[2025-11-25 06:13:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:13:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:13:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:13:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:13:39] 
[2025-11-25 06:13:39] 2025-11-25 05:12:51,645 | INFO     | ***************************************
[2025-11-25 06:13:39] 2025-11-25 05:12:52,148 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-25 06:13:39] 2025-11-25 05:12:52,204 | INFO     | sufficient remaining disk space (495311650816 B)
[2025-11-25 06:13:39] 2025-11-25 05:12:52,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:13:39] 2025-11-25 05:12:52,204 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:13:39] 2025-11-25 05:12:52,204 | INFO     | update_server=False
[2025-11-25 06:13:39] 2025-11-25 05:12:52,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:13:39] 2025-11-25 05:12:52,205 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:13:39] 2025-11-25 05:12:52,205 | INFO     | aborting loop
[2025-11-25 06:13:39] 2025-11-25 05:12:52,205 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:13:39] 2025-11-25 05:12:52,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:13:39] 2025-11-25 05:12:52,311 | INFO     | all payload control threads have been joined
[2025-11-25 06:13:39] 2025-11-25 05:12:52,545 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:13:39] 2025-11-25 05:12:52,748 | INFO     | all data control threads have been joined
[2025-11-25 06:13:39] 2025-11-25 05:12:52,970 | INFO     | all job control threads have been joined
[2025-11-25 06:13:39] 2025-11-25 05:12:53,210 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,211 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,211 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,230 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,252 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,316 | INFO     | [payload] control thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,340 | INFO     | [job] validate thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,436 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,532 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,755 | INFO     | [data] control thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,835 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:53,976 | INFO     | [job] control thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:54,550 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:54,679 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:12:56,212 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:13:39] 2025-11-25 05:13:21,674 | INFO     | PID=12268 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 06:13:39] 2025-11-25 05:13:21,674 | INFO     | .. there are 9 such processes running
[2025-11-25 06:13:39] 2025-11-25 05:13:21,675 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:13:39] 2025-11-25 05:13:21,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:13:39] 2025-11-25 05:13:21,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:13:39] 2025-11-25 05:13:31,022 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:13:39] 2025-11-25 05:13:31,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654563833664)>', '<ExcThread(monitor, started 139653529196288)>']
[2025-11-25 06:13:39] 2025-11-25 05:13:31,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:13:39] 2025-11-25 05:13:31,734 | INFO     | [monitor] control thread has ended
[2025-11-25 06:13:39] 2025-11-25 05:13:36,532 | INFO     | all workflow threads have been joined
[2025-11-25 06:13:39] 2025-11-25 05:13:36,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:13:39] 2025-11-25 05:13:36,532 | INFO     | traces error code: 0
[2025-11-25 06:13:39] 2025-11-25 05:13:36,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:13:39] 2025-11-25 05:13:36,759 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:13:39] 2025-11-25 05:13:36,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:13:39] 2025-11-25 05:13:36,983 [wrapper] pilotpid: 12268
[2025-11-25 06:13:39] 2025-11-25 05:13:37,032 [wrapper] Pilot exit status: 0
[2025-11-25 06:13:39] 2025-11-25 05:13:37,083 [wrapper] pandaids: 6894262091
[2025-11-25 06:13:39] 2025-11-25 05:13:37,125 [wrapper] cleanup supervisor_pilot 30218 12269
[2025-11-25 06:13:39] 2025-11-25 05:13:37,199 [wrapper] Test setup, not cleaning
[2025-11-25 06:13:39] 2025-11-25 05:13:37,247 [wrapper] apfmon messages muted
[2025-11-25 06:13:39] 2025-11-25 05:13:37,290 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:13:39] 2025-11-25 05:13:37,301 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:13:39]  *** Error codes and diagnostics ***
[2025-11-25 06:13:39]     "exeErrorCode": 0,
[2025-11-25 06:13:39]     "exeErrorDiag": "",
[2025-11-25 06:13:39]     "pilotErrorCode": 0,
[2025-11-25 06:13:39]     "pilotErrorDiag": "",
[2025-11-25 06:13:39]  *** Listing of results directory ***
[2025-11-25 06:13:39] total 1317392
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-25 06:13:39] -rwx------. 1 boinc boinc     36292 Nov 21 05:43 runpilot2-wrapper.sh
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc      5112 Nov 21 05:43 queuedata.json
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc       100 Nov 24 10:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:13:39] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 10:11 run_atlas
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc       105 Nov 24 10:11 job.xml
[2025-11-25 06:13:39] -rw-r--r--. 2 boinc boinc 407791617 Nov 24 10:11 EVNT.47493127._002196.pool.root.1
[2025-11-25 06:13:39] -rw-r--r--. 2 boinc boinc    590096 Nov 24 10:11 input.tar.gz
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc      6392 Nov 24 10:11 init_data.xml
[2025-11-25 06:13:39] -rw-r--r--. 2 boinc boinc     15847 Nov 24 10:11 start_atlas.sh
[2025-11-25 06:13:39] drwxrwx--x. 2 boinc boinc        68 Nov 24 10:11 shared
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc         0 Nov 24 10:11 boinc_lockfile
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc      2785 Nov 24 10:11 pandaJob.out
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc    989794 Nov 24 10:11 agis_schedconf.cvmfs.json
[2025-11-25 06:13:39] drwx------. 5 boinc boinc      4096 Nov 24 10:11 pilot3
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc       533 Nov 25 05:57 boinc_task_state.xml
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc 913438363 Nov 25 06:11 HITS.47533967._001678.pool.root.1
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc      1034 Nov 25 06:12 memory_monitor_summary.json
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc   1516227 Nov 25 06:12 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc   2318151 Nov 25 06:12 log.47533967._001678.job.log.tgz.1
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc      8627 Nov 25 06:12 heartbeat.json
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc        95 Nov 25 06:13 pilot_heartbeat.json
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc      8192 Nov 25 06:13 boinc_mmap_file
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc        29 Nov 25 06:13 wrapper_checkpoint.txt
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc      4884 Nov 25 06:13 pilotlog.txt
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc   9622678 Nov 25 06:13 log.47533967._001678.job.log.1
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc       353 Nov 25 06:13 output.list
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc       620 Nov 25 06:13 runtime_log
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc  11960320 Nov 25 06:13 result.tar.gz
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc      8817 Nov 25 06:13 runtime_log.err
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc       661 Nov 25 06:13 rSNKDmXAYg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmC2IKDma1zotn.diag
[2025-11-25 06:13:39] -rw-r--r--. 1 boinc boinc     20964 Nov 25 06:13 stderr.txt
[2025-11-25 06:13:39] HITS file was successfully produced:
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc 913438363 Nov 25 06:11 shared/HITS.pool.root.1
[2025-11-25 06:13:39]  *** Contents of shared directory: ***
[2025-11-25 06:13:39] total 1302544
[2025-11-25 06:13:39] -rw-r--r--. 2 boinc boinc 407791617 Nov 24 10:11 ATLAS.root_0
[2025-11-25 06:13:39] -rw-r--r--. 2 boinc boinc    590096 Nov 24 10:11 input.tar.gz
[2025-11-25 06:13:39] -rw-r--r--. 2 boinc boinc     15847 Nov 24 10:11 start_atlas.sh
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc 913438363 Nov 25 06:11 HITS.pool.root.1
[2025-11-25 06:13:39] -rw-------. 1 boinc boinc  11960320 Nov 25 06:13 result.tar.gz
06:13:40 (8549): run_atlas exited; CPU time 313157.878533
06:13:40 (8549): called boinc_finish(0)

</stderr_txt>
]]>

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