Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:40:20 (165901): wrapper (7.7.26015): starting
15:40:20 (165901): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 15:40:20] Arguments: --nthreads 4
[2025-11-24 15:40:20] Threads: 4
[2025-11-24 15:40:20] Checking for CVMFS
[2025-11-24 15:40:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 15:40:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 15:40:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 15:40:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 15:40:20] 2.9.2.0 3127036 8589 85732 153248 2 81 34205908 36864000 0 130560 0 3424462 99.927 465550 6617 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 15:40:20] CVMFS is ok
[2025-11-24 15:40:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 15:40:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 15:40:20] Further information can be found at the LHC@home message board.
[2025-11-24 15:40:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 15:40:20] Checking for apptainer binary...
[2025-11-24 15:40:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 15:40:20] Running /usr/bin/apptainer --version
[2025-11-24 15:40:20] apptainer version 1.4.1-1.1
[2025-11-24 15:40:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 15:40:20] thA334
[2025-11-24 15:40:20] apptainer works
[2025-11-24 15:40:20] Set ATHENA_PROC_NUMBER=4
[2025-11-24 15:40:20] Set ATHENA_CORE_NUMBER=4
[2025-11-24 15:40:20] Starting ATLAS job with PandaID=6894261686
[2025-11-24 15:40:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:24:28]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:24:28] 2025-11-24 21:23:57,911 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 22:24:28] 2025-11-24 21:23:57,911 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 22:24:28] 2025-11-24 21:23:57,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:24:28] 2025-11-24 21:23:57,912 | INFO     | will abort loop
[2025-11-24 22:24:28] 2025-11-24 21:23:58,117 | INFO     | all payload control threads have been joined
[2025-11-24 22:24:28] 2025-11-24 21:23:58,531 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:58,531 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:58,552 | INFO     | all job control threads have been joined
[2025-11-24 22:24:28] 2025-11-24 21:23:58,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:24:28] 2025-11-24 21:23:58,738 | INFO     | [data] control thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:58,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:58,917 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,110 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,122 | INFO     | [payload] control thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,172 | INFO     | [job] validate thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,269 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,453 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,558 | INFO     | [job] control thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,613 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,781 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:23:59,787 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:24:28] 2025-11-24 21:24:00,058 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:24:00,592 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:24:01,532 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:24:28] 2025-11-24 21:24:02,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635033106240)>', '<ExcThread(monitor, started 139633790797568)>']
[2025-11-24 22:24:28] 2025-11-24 21:24:07,930 | INFO     | all workflow threads have been joined
[2025-11-24 22:24:28] 2025-11-24 21:24:07,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:24:28] 2025-11-24 21:24:07,931 | INFO     | traces error code: 0
[2025-11-24 22:24:28] 2025-11-24 21:24:07,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:24:28] 2025-11-24 21:24:27,851 | INFO     | PID=169711 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 22:24:28] 2025-11-24 21:24:27,851 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:24:28] 2025-11-24 21:24:27,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:24:28] 2025-11-24 21:24:27,851 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:24:28] 2025-11-24 21:24:27,851 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:24:28] 2025-11-24 21:24:27,851 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 22:24:28] 2025-11-24 21:24:27,851 | INFO     | [monitor] control thread has ended
[2025-11-24 22:24:28] 2025-11-24 21:24:27,915 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:24:28] 2025-11-24 21:24:27,919 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:24:28] 2025-11-24 21:24:27,923 [wrapper] pilotpid: 169711
[2025-11-24 22:24:28] 2025-11-24 21:24:27,926 [wrapper] Pilot exit status: 0
[2025-11-24 22:24:28] 2025-11-24 21:24:27,937 [wrapper] pandaids: 6894261686
[2025-11-24 22:24:28] 2025-11-24 21:24:27,958 [wrapper] cleanup supervisor_pilot  218845 169712
[2025-11-24 22:24:28] 2025-11-24 21:24:27,962 [wrapper] Test setup, not cleaning
[2025-11-24 22:24:28] 2025-11-24 21:24:27,965 [wrapper] apfmon messages muted
[2025-11-24 22:24:28] 2025-11-24 21:24:27,969 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:24:28] 2025-11-24 21:24:27,973 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:24:28]  *** Error codes and diagnostics ***
[2025-11-24 22:24:28]     "exeErrorCode": 0,
[2025-11-24 22:24:28]     "exeErrorDiag": "",
[2025-11-24 22:24:28]     "pilotErrorCode": 0,
[2025-11-24 22:24:28]     "pilotErrorDiag": "",
[2025-11-24 22:24:28]  *** Listing of results directory ***
[2025-11-24 22:24:28] total 1304676
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc      5112 Nov 21 05:36 queuedata.json
[2025-11-24 22:24:28] -rwx------ 1 boinc boinc     36292 Nov 21 05:39 runpilot2-wrapper.sh
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc       100 Nov 24 15:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:24:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 15:40 run_atlas
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc       105 Nov 24 15:40 job.xml
[2025-11-24 22:24:28] -rw-r--r-- 2 boinc boinc 408303466 Nov 24 15:40 EVNT.47493127._002195.pool.root.1
[2025-11-24 22:24:28] -rw-r--r-- 2 boinc boinc    590103 Nov 24 15:40 input.tar.gz
[2025-11-24 22:24:28] -rw-r--r-- 2 boinc boinc     15847 Nov 24 15:40 start_atlas.sh
[2025-11-24 22:24:28] drwxrwx--x 2 boinc boinc      4096 Nov 24 15:40 shared
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc         0 Nov 24 15:40 boinc_setup_complete
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc      6368 Nov 24 15:40 init_data.xml
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc         0 Nov 24 15:40 boinc_lockfile
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc      2785 Nov 24 15:40 pandaJob.out
[2025-11-24 22:24:28] -rw------- 1 boinc boinc    988283 Nov 24 15:40 agis_schedconf.cvmfs.json
[2025-11-24 22:24:28] drwx------ 5 boinc boinc      4096 Nov 24 15:40 pilot3
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc       532 Nov 24 22:20 boinc_task_state.xml
[2025-11-24 22:24:28] -rw------- 1 boinc boinc 914470303 Nov 24 22:23 HITS.47533967._001662.pool.root.1
[2025-11-24 22:24:28] -rw------- 1 boinc boinc        95 Nov 24 22:23 pilot_heartbeat.json
[2025-11-24 22:24:28] -rw------- 1 boinc boinc      1028 Nov 24 22:23 memory_monitor_summary.json
[2025-11-24 22:24:28] -rw------- 1 boinc boinc   1516227 Nov 24 22:23 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:24:28] -rw------- 1 boinc boinc   1246080 Nov 24 22:23 log.47533967._001662.job.log.tgz.1
[2025-11-24 22:24:28] -rw------- 1 boinc boinc      8583 Nov 24 22:23 heartbeat.json
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc      8192 Nov 24 22:24 boinc_mmap_file
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc        28 Nov 24 22:24 wrapper_checkpoint.txt
[2025-11-24 22:24:28] -rw------- 1 boinc boinc       816 Nov 24 22:24 pilotlog.txt
[2025-11-24 22:24:28] -rw------- 1 boinc boinc   3411720 Nov 24 22:24 log.47533967._001662.job.log.1
[2025-11-24 22:24:28] -rw------- 1 boinc boinc       353 Nov 24 22:24 output.list
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc       620 Nov 24 22:24 runtime_log
[2025-11-24 22:24:28] -rw------- 1 boinc boinc   4679680 Nov 24 22:24 result.tar.gz
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc      8898 Nov 24 22:24 runtime_log.err
[2025-11-24 22:24:28] -rw------- 1 boinc boinc       665 Nov 24 22:24 CxMKDmX6Xg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm31IKDmegJztn.diag
[2025-11-24 22:24:28] -rw-r--r-- 1 boinc boinc      7150 Nov 24 22:24 stderr.txt
[2025-11-24 22:24:28] HITS file was successfully produced:
[2025-11-24 22:24:28] -rw------- 1 boinc boinc 914470303 Nov 24 22:23 shared/HITS.pool.root.1
[2025-11-24 22:24:28]  *** Contents of shared directory: ***
[2025-11-24 22:24:28] total 1296952
[2025-11-24 22:24:28] -rw-r--r-- 2 boinc boinc 408303466 Nov 24 15:40 ATLAS.root_0
[2025-11-24 22:24:28] -rw-r--r-- 2 boinc boinc    590103 Nov 24 15:40 input.tar.gz
[2025-11-24 22:24:28] -rw-r--r-- 2 boinc boinc     15847 Nov 24 15:40 start_atlas.sh
[2025-11-24 22:24:28] -rw------- 1 boinc boinc 914470303 Nov 24 22:23 HITS.pool.root.1
[2025-11-24 22:24:28] -rw------- 1 boinc boinc   4679680 Nov 24 22:24 result.tar.gz
22:24:29 (165901): run_atlas exited; CPU time 94827.513709
22:24:29 (165901): called boinc_finish(0)

</stderr_txt>
]]>

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