Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:46:57 (17034): wrapper (7.7.26015): starting
12:46:57 (17034): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 12:46:57] Arguments: --nthreads 8
[2025-11-24 12:46:57] Threads: 8
[2025-11-24 12:46:57] Checking for CVMFS
[2025-11-24 12:46:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:46:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:46:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:47:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:47:00] 2.11.2.0 9859 282305 137920 153244 1 87 23966620 25165824 1027 130560 12 146672824 99.888 85486494 3263 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 12:47:00] CVMFS is ok
[2025-11-24 12:47:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:47:00] Checking for apptainer binary...
[2025-11-24 12:47:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:47:00] Running /usr/bin/apptainer --version
[2025-11-24 12:47:01] apptainer version 1.3.2-1.el7
[2025-11-24 12:47:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:47:08] cg-vwn461.simple-grid.lan
[2025-11-24 12:47:08] apptainer works
[2025-11-24 12:47:08] Set ATHENA_PROC_NUMBER=8
[2025-11-24 12:47:08] Set ATHENA_CORE_NUMBER=8
[2025-11-24 12:47:08] Starting ATLAS job with PandaID=6893876488
[2025-11-24 12:47:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:38:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:38:19] 2025-11-25 11:37:08,178 | INFO     | executing command: lscpu
[2025-11-25 12:38:19] 2025-11-25 11:37:08,205 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 12:38:19] 2025-11-25 11:37:09,207 | INFO     | time since job start (85526s) is within the limit (172800.0s)
[2025-11-25 12:38:19] 2025-11-25 11:37:10,308 | INFO     | monitor loop #5788: job 0:6893876488 is in state 'finished'
[2025-11-25 12:38:19] 2025-11-25 11:37:10,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:19] 2025-11-25 11:37:11,213 | INFO     | time since job start (85528s) is within the limit (172800.0s)
[2025-11-25 12:38:19] 2025-11-25 11:37:12,811 | INFO     | monitor loop #5789: job 0:6893876488 is in state 'finished'
[2025-11-25 12:38:19] 2025-11-25 11:37:12,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:19] 2025-11-25 11:37:13,222 | INFO     | time since job start (85530s) is within the limit (172800.0s)
[2025-11-25 12:38:19] 2025-11-25 11:37:15,229 | INFO     | time since job start (85532s) is within the limit (172800.0s)
[2025-11-25 12:38:19] 2025-11-25 11:37:15,315 | INFO     | monitor loop #5790: job 0:6893876488 is in state 'finished'
[2025-11-25 12:38:19] 2025-11-25 11:37:15,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:19] 2025-11-25 11:37:17,235 | INFO     | time since job start (85534s) is within the limit (172800.0s)
[2025-11-25 12:38:19] 2025-11-25 11:37:17,789 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 12:38:19] 2025-11-25 11:37:17,792 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-25 12:38:19] 2025-11-25 11:37:17,794 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6893876488/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:38:19] 2025-11-25 11:37:17,795 | INFO     | extracted standard info from prmon json
[2025-11-25 12:38:19] 2025-11-25 11:37:17,795 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:38:19] 2025-11-25 11:37:17,795 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:38:19] 2025-11-25 11:37:17,821 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:38:19] 2025-11-25 11:37:17,824 | INFO     | sum of square deviations: 836366906135.3271
[2025-11-25 12:38:19] 2025-11-25 11:37:17,828 | INFO     | monitor loop #5791: job 0:6893876488 is in state 'finished'
[2025-11-25 12:38:19] 2025-11-25 11:37:17,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:38:19] 2025-11-25 11:37:17,879 | INFO     | sum of deviations: 5253286776324.428
[2025-11-25 12:38:19] 2025-11-25 11:37:17,879 | INFO     | mean x: 1764028139.5438218
[2025-11-25 12:38:19] 2025-11-25 11:37:17,879 | INFO     | mean y: 2844482.7880747127
[2025-11-25 12:38:19] 2025-11-25 11:37:17,879 | INFO     | intersect: -11077155969.824665
[2025-11-25 12:38:19] 2025-11-25 11:37:17,881 | INFO     | chi2: 21.387659632294977
[2025-11-25 12:38:19] 2025-11-25 11:37:17,883 | INFO     | sum of square deviations: 827387125104.8595
[2025-11-25 12:38:19] 2025-11-25 11:37:17,940 | INFO     | sum of deviations: 5714636699887.856
[2025-11-25 12:38:19] 2025-11-25 11:37:17,941 | INFO     | mean x: 1764027987.0475848
[2025-11-25 12:38:19] 2025-11-25 11:37:17,941 | INFO     | mean y: 2852319.2292718096
[2025-11-25 12:38:19] 2025-11-25 11:37:17,941 | INFO     | intersect: -12181019980.129791
[2025-11-25 12:38:19] 2025-11-25 11:37:17,943 | INFO     | chi2: 18.37147752860056
[2025-11-25 12:38:19] 2025-11-25 11:37:17,943 | INFO     | current chi2=18.37147752860056 (change=14.102441106459517 %)
[2025-11-25 12:38:19] 2025-11-25 11:37:17,943 | INFO     | right removable region: 1386
[2025-11-25 12:38:19] 2025-11-25 11:37:17,945 | INFO     | sum of square deviations: 827386238774.8589
[2025-11-25 12:38:19] 2025-11-25 11:37:18,001 | INFO     | sum of deviations: 4664256666441.043
[2025-11-25 12:38:19] 2025-11-25 11:37:18,001 | INFO     | mean x: 1764028292.0475848
[2025-11-25 12:38:19] 2025-11-25 11:37:18,001 | INFO     | mean y: 2854484.817591925
[2025-11-25 12:38:19] 2025-11-25 11:37:18,001 | INFO     | intersect: -9941570906.106094
[2025-11-25 12:38:19] 2025-11-25 11:37:18,003 | INFO     | chi2: 16.354476860310005
[2025-11-25 12:38:19] 2025-11-25 11:37:18,003 | INFO     | current chi2=16.354476860310005 (change=23.533116098336247 %)
[2025-11-25 12:38:19] 2025-11-25 11:37:18,004 | INFO     | left removable region: 10
[2025-11-25 12:38:19] 2025-11-25 11:37:18,005 | INFO     | sum of square deviations: 807856591917.6896
[2025-11-25 12:38:19] 2025-11-25 11:37:18,058 | INFO     | sum of deviations: 4612777500241.824
[2025-11-25 12:38:19] 2025-11-25 11:37:18,059 | INFO     | mean x: 1764028261.5559592
[2025-11-25 12:38:19] 2025-11-25 11:37:18,059 | INFO     | mean y: 2872588.125726744
[2025-11-25 12:38:19] 2025-11-25 11:37:18,059 | INFO     | intersect: -10069546150.675743
[2025-11-25 12:38:19] 2025-11-25 11:37:18,061 | INFO     | chi2: 8.826416503128463
[2025-11-25 12:38:19] 2025-11-25 11:37:18,061 | INFO     | current memory leak: 5.71 B/s (using 1376 data points, chi2=8.83)
[2025-11-25 12:38:19] 2025-11-25 11:37:18,063 | INFO     | could have reported an average CPU frequency of 2250 MHz (47 samples)
[2025-11-25 12:38:19] 2025-11-25 11:37:18,063 | INFO     | ..............................
[2025-11-25 12:38:19] 2025-11-25 11:37:18,063 | INFO     | . Timing measurements:
[2025-11-25 12:38:19] 2025-11-25 11:37:18,063 | INFO     | . get job = 0 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,063 | INFO     | . initial setup = 13 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,064 | INFO     | . payload setup = 210 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,064 | INFO     | . stage-in = 0 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,064 | INFO     | . payload execution = 85069 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,064 | INFO     | . stage-out = 3 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,064 | INFO     | . log creation = 1 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,064 | INFO     | ..............................
[2025-11-25 12:38:19] 2025-11-25 11:37:18,678 | INFO     | 
[2025-11-25 12:38:19] 2025-11-25 11:37:18,678 | INFO     | job summary report
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | --------------------------------------------------
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | PanDA job id: 6893876488
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | task id: 47523449
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | errors: (none)
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | pilot state: finished 
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | transexitcode: 0
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | exeerrorcode: 0
[2025-11-25 12:38:19] 2025-11-25 11:37:18,679 | INFO     | exeerrordiag: 
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | exitcode: 0
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | exitmsg: OK
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | cpuconsumptiontime: 333162 s
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | nevents: 1000
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | neventsw: 0
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | pid: 27505
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | pgrp: 27505
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | corecount: 8
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | event service: False
[2025-11-25 12:38:19] 2025-11-25 11:37:18,680 | INFO     | sizes: {0: 2284089, 1: 2284288, 12: 2284288, 23: 2284316, 33: 2284344, 44: 2284400, 55: 2284556, 65: 2284584, 76: 2284612, 87: 2284668, 98: 2284696, 108: 2285004, 
[2025-11-25 12:38:19] 2025-11-25 11:37:18,681 | INFO     | --------------------------------------------------
[2025-11-25 12:38:19] 2025-11-25 11:37:18,681 | INFO     | 
[2025-11-25 12:38:19] 2025-11-25 11:37:18,681 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-25 12:38:19] 2025-11-25 11:37:18,750 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,750 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,750 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,751 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,752 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,752 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,752 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:38:19] 2025-11-25 11:37:18,752 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,752 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:38:19] 2025-11-25 11:37:18,752 | INFO     | job 6893876488 has completed (purged errors)
[2025-11-25 12:38:19] 2025-11-25 11:37:18,752 | INFO     | overall cleanup function is called
[2025-11-25 12:38:19] 2025-11-25 11:37:19,767 | INFO     | --- collectZombieJob: --- 10, [27505]
[2025-11-25 12:38:19] 2025-11-25 11:37:19,767 | INFO     | zombie collector waiting for pid 27505
[2025-11-25 12:38:19] 2025-11-25 11:37:19,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:38:19] 2025-11-25 11:37:19,768 | INFO     | collected zombie processes
[2025-11-25 12:38:19] 2025-11-25 11:37:19,768 | INFO     | will attempt to kill all subprocesses of pid=27505
[2025-11-25 12:38:19] 2025-11-25 11:37:19,856 | INFO     | process IDs to be killed: [27505] (in reverse order)
[2025-11-25 12:38:19] 2025-11-25 11:37:19,912 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:38:19] 2025-11-25 11:37:19,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:38:19] 2025-11-25 11:37:19,916 | INFO     | did not find any defunct processes belonging to 27505
[2025-11-25 12:38:19] 2025-11-25 11:37:19,919 | INFO     | did not find any defunct processes belonging to 27505
[2025-11-25 12:38:19] 2025-11-25 11:37:19,922 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:38:19] 2025-11-25 11:37:19,922 | INFO     | ready for new job
[2025-11-25 12:38:19] 2025-11-25 11:37:19,922 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:38:19] 2025-11-25 11:37:19,928 | INFO     | ***************************************
[2025-11-25 12:38:19] 2025-11-25 11:37:19,928 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:38:19] 2025-11-25 11:37:19,929 | INFO     | ***************************************
[2025-11-25 12:38:19] 2025-11-25 11:37:19,929 | INFO     | 
[2025-11-25 12:38:19] 2025-11-25 11:37:19,929 | INFO     | pilot is running in a VM
[2025-11-25 12:38:19] 2025-11-25 11:37:19,929 | INFO     | architecture information:
[2025-11-25 12:38:19] 2025-11-25 11:37:19,930 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:38:19] 2025-11-25 11:37:19,949 | INFO     | cat /etc/os-release:
[2025-11-25 12:38:19] NAME="CentOS Linux"
[2025-11-25 12:38:19] VERSION="7 (Core)"
[2025-11-25 12:38:19] ID="centos"
[2025-11-25 12:38:19] ID_LIKE="rhel fedora"
[2025-11-25 12:38:19] VERSION_ID="7"
[2025-11-25 12:38:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:38:19] ANSI_COLOR="0;31"
[2025-11-25 12:38:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:38:19] HOME_URL="https://www.centos.org/"
[2025-11-25 12:38:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:38:19] 
[2025-11-25 12:38:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:38:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:38:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:38:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:38:19] 
[2025-11-25 12:38:19] 2025-11-25 11:37:19,949 | INFO     | ***************************************
[2025-11-25 12:38:19] 2025-11-25 11:37:20,452 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-25 12:38:19] 2025-11-25 11:37:20,479 | INFO     | sufficient remaining disk space (496123248640 B)
[2025-11-25 12:38:19] 2025-11-25 11:37:20,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:38:19] 2025-11-25 11:37:20,480 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:38:19] 2025-11-25 11:37:20,480 | INFO     | update_server=False
[2025-11-25 12:38:19] 2025-11-25 11:37:20,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:38:19] 2025-11-25 11:37:20,771 | INFO     | all payload control threads have been joined
[2025-11-25 12:38:19] 2025-11-25 11:37:20,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:38:19] 2025-11-25 11:37:20,942 | INFO     | all data control threads have been joined
[2025-11-25 12:38:19] 2025-11-25 11:37:20,969 | INFO     | all job control threads have been joined
[2025-11-25 12:38:19] 2025-11-25 11:37:21,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:38:19] 2025-11-25 11:37:21,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:38:19] 2025-11-25 11:37:21,339 | INFO     | aborting loop
[2025-11-25 12:38:19] 2025-11-25 11:37:21,486 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:21,499 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:21,714 | INFO     | [job] validate thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:21,777 | INFO     | [payload] control thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:21,947 | INFO     | [data] control thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:21,975 | INFO     | [job] control thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:22,223 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:22,260 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:22,344 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:22,405 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:22,644 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:22,770 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:22,844 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:23,192 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:38:19] 2025-11-25 11:37:23,296 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:24,197 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:24,907 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:38:19] 2025-11-25 11:37:48,244 [wrapper] supervise_pilot (15 min periods counter: 96)
[2025-11-25 12:38:19] 2025-11-25 11:37:50,468 | INFO     | PID=21043 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 12:38:19] 2025-11-25 11:37:50,468 | INFO     | .. there are 9 such processes running
[2025-11-25 12:38:19] 2025-11-25 11:37:50,468 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:38:19] 2025-11-25 11:37:50,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:38:19] 2025-11-25 11:37:50,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:38:19] 2025-11-25 11:38:11,872 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:38:19] 2025-11-25 11:38:12,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139925988464448)>', '<ExcThread(monitor, started 139925689177856)>']
[2025-11-25 12:38:19] 2025-11-25 11:38:12,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:38:19] 2025-11-25 11:38:12,590 | INFO     | [monitor] control thread has ended
[2025-11-25 12:38:19] 2025-11-25 11:38:17,074 | INFO     | all workflow threads have been joined
[2025-11-25 12:38:19] 2025-11-25 11:38:17,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:38:19] 2025-11-25 11:38:17,074 | INFO     | traces error code: 0
[2025-11-25 12:38:19] 2025-11-25 11:38:17,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:38:19] 2025-11-25 11:38:17,296 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:38:19] 2025-11-25 11:38:17,347 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:38:19] 2025-11-25 11:38:17,363 [wrapper] pilotpid: 21043
[2025-11-25 12:38:19] 2025-11-25 11:38:17,432 [wrapper] Pilot exit status: 0
[2025-11-25 12:38:19] 2025-11-25 11:38:17,589 [wrapper] pandaids: 6893876488
[2025-11-25 12:38:19] 2025-11-25 11:38:17,896 [wrapper] cleanup supervisor_pilot 27924 21044
[2025-11-25 12:38:19] 2025-11-25 11:38:17,944 [wrapper] Test setup, not cleaning
[2025-11-25 12:38:19] 2025-11-25 11:38:18,002 [wrapper] apfmon messages muted
[2025-11-25 12:38:19] 2025-11-25 11:38:18,067 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:38:19] 2025-11-25 11:38:18,092 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:38:19]  *** Error codes and diagnostics ***
[2025-11-25 12:38:19]     "exeErrorCode": 0,
[2025-11-25 12:38:19]     "exeErrorDiag": "",
[2025-11-25 12:38:19]     "pilotErrorCode": 0,
[2025-11-25 12:38:19]     "pilotErrorDiag": "",
[2025-11-25 12:38:19]  *** Listing of results directory ***
[2025-11-25 12:38:19] total 1342128
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc    576529 Nov 20 18:01 pilot3.tar.gz
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc      5112 Nov 20 18:14 queuedata.json
[2025-11-25 12:38:19] -rwx------. 1 boinc boinc     36292 Nov 20 18:15 runpilot2-wrapper.sh
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc       100 Nov 24 12:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:38:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 12:46 run_atlas
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc       105 Nov 24 12:46 job.xml
[2025-11-25 12:38:19] -rw-r--r--. 2 boinc boinc 411383402 Nov 24 12:46 EVNT.47493127._000757.pool.root.1
[2025-11-25 12:38:19] -rw-r--r--. 2 boinc boinc     15847 Nov 24 12:46 start_atlas.sh
[2025-11-25 12:38:19] drwxrwx--x. 2 boinc boinc        68 Nov 24 12:46 shared
[2025-11-25 12:38:19] -rw-r--r--. 2 boinc boinc    590104 Nov 24 12:46 input.tar.gz
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc      6393 Nov 24 12:46 init_data.xml
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc         0 Nov 24 12:46 boinc_lockfile
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc      2785 Nov 24 12:47 pandaJob.out
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc    989803 Nov 24 12:51 agis_schedconf.cvmfs.json
[2025-11-25 12:38:19] drwx------. 5 boinc boinc      4096 Nov 24 12:51 pilot3
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc       533 Nov 25 12:25 boinc_task_state.xml
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc 931095665 Nov 25 12:36 HITS.47523449._007564.pool.root.1
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc      1032 Nov 25 12:36 memory_monitor_summary.json
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc   1516240 Nov 25 12:37 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc   2485668 Nov 25 12:37 log.47523449._007564.job.log.tgz.1
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc        95 Nov 25 12:37 pilot_heartbeat.json
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc      8626 Nov 25 12:37 heartbeat.json
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc      4885 Nov 25 12:38 pilotlog.txt
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc  11491797 Nov 25 12:38 log.47523449._007564.job.log.1
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc      8192 Nov 25 12:38 boinc_mmap_file
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc       353 Nov 25 12:38 output.list
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc        29 Nov 25 12:38 wrapper_checkpoint.txt
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc       620 Nov 25 12:38 runtime_log
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc  13998080 Nov 25 12:38 result.tar.gz
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc      8833 Nov 25 12:38 runtime_log.err
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc       662 Nov 25 12:38 188MDmpQNg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhLIKDmOYe0mm.diag
[2025-11-25 12:38:19] -rw-r--r--. 1 boinc boinc     21474 Nov 25 12:38 stderr.txt
[2025-11-25 12:38:19] HITS file was successfully produced:
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc 931095665 Nov 25 12:36 shared/HITS.pool.root.1
[2025-11-25 12:38:19]  *** Contents of shared directory: ***
[2025-11-25 12:38:19] total 1325288
[2025-11-25 12:38:19] -rw-r--r--. 2 boinc boinc 411383402 Nov 24 12:46 ATLAS.root_0
[2025-11-25 12:38:19] -rw-r--r--. 2 boinc boinc     15847 Nov 24 12:46 start_atlas.sh
[2025-11-25 12:38:19] -rw-r--r--. 2 boinc boinc    590104 Nov 24 12:46 input.tar.gz
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc 931095665 Nov 25 12:36 HITS.pool.root.1
[2025-11-25 12:38:19] -rw-------. 1 boinc boinc  13998080 Nov 25 12:38 result.tar.gz
12:38:21 (17034): run_atlas exited; CPU time 333442.204818
12:38:21 (17034): called boinc_finish(0)

</stderr_txt>
]]>

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