Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:41:42 (18409): wrapper (7.7.26015): starting
13:41:42 (18409): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 13:41:42] Arguments: --nthreads 8
[2025-11-21 13:41:42] Threads: 8
[2025-11-21 13:41:42] Checking for CVMFS
[2025-11-21 13:41:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 13:41:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 13:41:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 13:41:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 13:41:43] 2.11.2.0 2878 50670 78616 153139 1 81 19701875 20275200 1 130560 0 9784351 99.751 3166278 30688 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 13:41:43] CVMFS is ok
[2025-11-21 13:41:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 13:41:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 13:41:43] Further information can be found at the LHC@home message board.
[2025-11-21 13:41:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 13:41:43] Checking for apptainer binary...
[2025-11-21 13:41:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 13:41:43] Running /usr/bin/apptainer --version
[2025-11-21 13:41:43] apptainer version 1.3.2-1.el7
[2025-11-21 13:41:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 13:41:45] c-204-27.aglt2.org
[2025-11-21 13:41:45] apptainer works
[2025-11-21 13:41:45] Set ATHENA_PROC_NUMBER=8
[2025-11-21 13:41:45] Set ATHENA_CORE_NUMBER=8
[2025-11-21 13:41:45] Starting ATLAS job with PandaID=6893885317
[2025-11-21 13:41:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 02:09:32]  *** The last 200 lines of the pilot log: ***
[2025-11-22 02:09:32] 2025-11-22 07:08:54,512 | INFO     | job 6893885317 has finished - writing final server update
[2025-11-22 02:09:32] 2025-11-22 07:08:54,512 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 02:09:32] 2025-11-22 07:08:54,513 | INFO     | executing command: lscpu
[2025-11-22 02:09:32] 2025-11-22 07:08:54,540 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 02:09:32] 2025-11-22 07:08:55,104 | INFO     | time since job start (44812s) is within the limit (172800.0s)
[2025-11-22 02:09:32] 2025-11-22 07:08:56,199 | INFO     | monitor loop #3319: job 0:6893885317 is in state 'finished'
[2025-11-22 02:09:32] 2025-11-22 07:08:56,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:09:32] 2025-11-22 07:08:57,110 | INFO     | time since job start (44814s) is within the limit (172800.0s)
[2025-11-22 02:09:32] 2025-11-22 07:08:58,708 | INFO     | monitor loop #3320: job 0:6893885317 is in state 'finished'
[2025-11-22 02:09:32] 2025-11-22 07:08:58,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:09:32] 2025-11-22 07:08:59,116 | INFO     | time since job start (44816s) is within the limit (172800.0s)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,233 | INFO     | PID=22099 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 02:09:32] 2025-11-22 07:09:00,480 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 02:09:32] 2025-11-22 07:09:00,484 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-22 02:09:32] 2025-11-22 07:09:00,487 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893885317/memory_monitor_output.txt (trf name=prmon)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,504 | INFO     | extracted standard info from memory monitor json
[2025-11-22 02:09:32] 2025-11-22 07:09:00,504 | WARNING  | standard memory fields were not found in memory monitor json (or json doesn't exist yet): 'totRCHAR'
[2025-11-22 02:09:32] 2025-11-22 07:09:00,520 | INFO     | fitting pss+swap vs Time
[2025-11-22 02:09:32] 2025-11-22 07:09:00,522 | INFO     | sum of square deviations: 97070760993.37561
[2025-11-22 02:09:32] 2025-11-22 07:09:00,532 | INFO     | sum of deviations: 1028855784192.5928
[2025-11-22 02:09:32] 2025-11-22 07:09:00,532 | INFO     | mean x: 1763771234.580265
[2025-11-22 02:09:32] 2025-11-22 07:09:00,532 | INFO     | mean y: 2922073.0441826214
[2025-11-22 02:09:32] 2025-11-22 07:09:00,532 | INFO     | intersect: -18691339907.803524
[2025-11-22 02:09:32] 2025-11-22 07:09:00,533 | INFO     | chi2: 2.265677839418237
[2025-11-22 02:09:32] 2025-11-22 07:09:00,534 | INFO     | sum of square deviations: 94942135278.51176
[2025-11-22 02:09:32] 2025-11-22 07:09:00,543 | INFO     | sum of deviations: 1014458276544.5835
[2025-11-22 02:09:32] 2025-11-22 07:09:00,543 | INFO     | mean x: 1763771082.0816023
[2025-11-22 02:09:32] 2025-11-22 07:09:00,544 | INFO     | mean y: 2921041.5712166172
[2025-11-22 02:09:32] 2025-11-22 07:09:00,544 | INFO     | intersect: -18843001971.418392
[2025-11-22 02:09:32] 2025-11-22 07:09:00,545 | INFO     | chi2: 2.2634170067960295
[2025-11-22 02:09:32] 2025-11-22 07:09:00,545 | INFO     | current chi2=2.2634170067960295 (change=0.09978614712442307 %)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,545 | INFO     | right removable region: 673
[2025-11-22 02:09:32] 2025-11-22 07:09:00,546 | INFO     | sum of square deviations: 94941977654.17938
[2025-11-22 02:09:32] 2025-11-22 07:09:00,556 | INFO     | sum of deviations: 844897512430.9376
[2025-11-22 02:09:32] 2025-11-22 07:09:00,556 | INFO     | mean x: 1763771387.0845697
[2025-11-22 02:09:32] 2025-11-22 07:09:00,556 | INFO     | mean y: 2935228.474777448
[2025-11-22 02:09:32] 2025-11-22 07:09:00,556 | INFO     | intersect: -15693030815.887665
[2025-11-22 02:09:32] 2025-11-22 07:09:00,557 | INFO     | chi2: 0.15655124106564167
[2025-11-22 02:09:32] 2025-11-22 07:09:00,557 | INFO     | current chi2=0.15655124106564167 (change=93.09031326775745 %)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,558 | INFO     | sum of square deviations: 92844626334.30779
[2025-11-22 02:09:32] 2025-11-22 07:09:00,567 | INFO     | sum of deviations: 802561831773.5469
[2025-11-22 02:09:32] 2025-11-22 07:09:00,567 | INFO     | mean x: 1763771539.5859492
[2025-11-22 02:09:32] 2025-11-22 07:09:00,568 | INFO     | mean y: 2938304.9730941704
[2025-11-22 02:09:32] 2025-11-22 07:09:00,568 | INFO     | intersect: -15243347597.920155
[2025-11-22 02:09:32] 2025-11-22 07:09:00,568 | INFO     | chi2: 0.11911454337386525
[2025-11-22 02:09:32] 2025-11-22 07:09:00,569 | INFO     | current chi2=0.11911454337386525 (change=23.913382887893732 %)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,569 | INFO     | left removable region: 20
[2025-11-22 02:09:32] 2025-11-22 07:09:00,569 | INFO     | sum of square deviations: 86341167205.82788
[2025-11-22 02:09:32] 2025-11-22 07:09:00,579 | INFO     | sum of deviations: 743607832626.8523
[2025-11-22 02:09:32] 2025-11-22 07:09:00,579 | INFO     | mean x: 1763771661.5911179
[2025-11-22 02:09:32] 2025-11-22 07:09:00,579 | INFO     | mean y: 2940512.4226646246
[2025-11-22 02:09:32] 2025-11-22 07:09:00,579 | INFO     | intersect: -15187431183.593803
[2025-11-22 02:09:32] 2025-11-22 07:09:00,580 | INFO     | chi2: 0.11349568315973636
[2025-11-22 02:09:32] 2025-11-22 07:09:00,580 | INFO     | current memory leak: 8.61 B/s (using 653 data points, chi2=0.11)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,581 | INFO     | could have reported an average CPU frequency of 2149 MHz (28 samples)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,581 | INFO     | ..............................
[2025-11-22 02:09:32] 2025-11-22 07:09:00,581 | INFO     | . Timing measurements:
[2025-11-22 02:09:32] 2025-11-22 07:09:00,581 | INFO     | . get job = 0 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,581 | INFO     | . initial setup = 2 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,582 | INFO     | . payload setup = 9 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,582 | INFO     | . stage-in = 0 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,582 | INFO     | . payload execution = 44711 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,582 | INFO     | . stage-out = 3 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,582 | INFO     | . log creation = 0 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,583 | INFO     | ..............................
[2025-11-22 02:09:32] 2025-11-22 07:09:00,683 | INFO     | 
[2025-11-22 02:09:32] 2025-11-22 07:09:00,684 | INFO     | job summary report
[2025-11-22 02:09:32] 2025-11-22 07:09:00,684 | INFO     | --------------------------------------------------
[2025-11-22 02:09:32] 2025-11-22 07:09:00,684 | INFO     | PanDA job id: 6893885317
[2025-11-22 02:09:32] 2025-11-22 07:09:00,684 | INFO     | task id: 47523449
[2025-11-22 02:09:32] 2025-11-22 07:09:00,684 | INFO     | errors: (none)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,685 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 02:09:32] 2025-11-22 07:09:00,685 | INFO     | pilot state: finished 
[2025-11-22 02:09:32] 2025-11-22 07:09:00,685 | INFO     | transexitcode: 0
[2025-11-22 02:09:32] 2025-11-22 07:09:00,685 | INFO     | exeerrorcode: 0
[2025-11-22 02:09:32] 2025-11-22 07:09:00,685 | INFO     | exeerrordiag: 
[2025-11-22 02:09:32] 2025-11-22 07:09:00,686 | INFO     | exitcode: 0
[2025-11-22 02:09:32] 2025-11-22 07:09:00,686 | INFO     | exitmsg: OK
[2025-11-22 02:09:32] 2025-11-22 07:09:00,686 | INFO     | cpuconsumptiontime: 346790 s
[2025-11-22 02:09:32] 2025-11-22 07:09:00,686 | INFO     | nevents: 1000
[2025-11-22 02:09:32] 2025-11-22 07:09:00,686 | INFO     | neventsw: 0
[2025-11-22 02:09:32] 2025-11-22 07:09:00,686 | INFO     | pid: 28636
[2025-11-22 02:09:32] 2025-11-22 07:09:00,687 | INFO     | pgrp: 28636
[2025-11-22 02:09:32] 2025-11-22 07:09:00,687 | INFO     | corecount: 8
[2025-11-22 02:09:32] 2025-11-22 07:09:00,687 | INFO     | event service: False
[2025-11-22 02:09:32] 2025-11-22 07:09:00,687 | INFO     | sizes: {0: 2298636, 1: 2298835, 7: 2299097, 12: 2299125, 44785: 2344967, 44790: 2353961, 44792: 2354145, 44801: 2354391}
[2025-11-22 02:09:32] 2025-11-22 07:09:00,687 | INFO     | --------------------------------------------------
[2025-11-22 02:09:32] 2025-11-22 07:09:00,687 | INFO     | 
[2025-11-22 02:09:32] 2025-11-22 07:09:00,688 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 02:09:32] 2025-11-22 07:09:00,717 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,717 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,717 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,717 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,718 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,720 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,721 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 02:09:32] 2025-11-22 07:09:00,721 | INFO     | job 6893885317 has completed (purged errors)
[2025-11-22 02:09:32] 2025-11-22 07:09:00,721 | INFO     | overall cleanup function is called
[2025-11-22 02:09:32] 2025-11-22 07:09:01,733 | INFO     | --- collectZombieJob: --- 10, [28636]
[2025-11-22 02:09:32] 2025-11-22 07:09:01,734 | INFO     | zombie collector waiting for pid 28636
[2025-11-22 02:09:32] 2025-11-22 07:09:01,734 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 02:09:32] 2025-11-22 07:09:01,734 | INFO     | collected zombie processes
[2025-11-22 02:09:32] 2025-11-22 07:09:01,734 | INFO     | will attempt to kill all subprocesses of pid=28636
[2025-11-22 02:09:32] 2025-11-22 07:09:01,825 | INFO     | process IDs to be killed: [28636] (in reverse order)
[2025-11-22 02:09:32] 2025-11-22 07:09:01,887 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 02:09:32] 2025-11-22 07:09:01,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 02:09:32] 2025-11-22 07:09:01,894 | INFO     | did not find any defunct processes belonging to 28636
[2025-11-22 02:09:32] 2025-11-22 07:09:01,897 | INFO     | did not find any defunct processes belonging to 28636
[2025-11-22 02:09:32] 2025-11-22 07:09:01,900 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 02:09:32] 2025-11-22 07:09:01,900 | INFO     | ready for new job
[2025-11-22 02:09:32] 2025-11-22 07:09:01,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 02:09:32] 2025-11-22 07:09:01,905 | INFO     | ***************************************
[2025-11-22 02:09:32] 2025-11-22 07:09:01,905 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 02:09:32] 2025-11-22 07:09:01,905 | INFO     | ***************************************
[2025-11-22 02:09:32] 2025-11-22 07:09:01,905 | INFO     | 
[2025-11-22 02:09:32] 2025-11-22 07:09:01,906 | INFO     | architecture information:
[2025-11-22 02:09:32] 2025-11-22 07:09:01,907 | INFO     | executing command: cat /etc/os-release
[2025-11-22 02:09:32] 2025-11-22 07:09:01,927 | INFO     | cat /etc/os-release:
[2025-11-22 02:09:32] NAME="CentOS Linux"
[2025-11-22 02:09:32] VERSION="7 (Core)"
[2025-11-22 02:09:32] ID="centos"
[2025-11-22 02:09:32] ID_LIKE="rhel fedora"
[2025-11-22 02:09:32] VERSION_ID="7"
[2025-11-22 02:09:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 02:09:32] ANSI_COLOR="0;31"
[2025-11-22 02:09:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 02:09:32] HOME_URL="https://www.centos.org/"
[2025-11-22 02:09:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 02:09:32] 
[2025-11-22 02:09:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 02:09:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 02:09:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 02:09:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 02:09:32] 
[2025-11-22 02:09:32] 2025-11-22 07:09:01,928 | INFO     | ***************************************
[2025-11-22 02:09:32] 2025-11-22 07:09:02,431 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 02:09:32] 2025-11-22 07:09:02,453 | INFO     | sufficient remaining disk space (17439916032 B)
[2025-11-22 02:09:32] 2025-11-22 07:09:02,454 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 02:09:32] 2025-11-22 07:09:02,454 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 02:09:32] 2025-11-22 07:09:02,454 | INFO     | update_server=False
[2025-11-22 02:09:32] 2025-11-22 07:09:02,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 02:09:32] 2025-11-22 07:09:02,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:09:32] 2025-11-22 07:09:02,455 | INFO     | aborting loop
[2025-11-22 02:09:32] 2025-11-22 07:09:02,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:09:32] 2025-11-22 07:09:02,475 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 02:09:32] 2025-11-22 07:09:02,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 02:09:32] 2025-11-22 07:09:02,806 | INFO     | all data control threads have been joined
[2025-11-22 02:09:32] 2025-11-22 07:09:03,397 | INFO     | all payload control threads have been joined
[2025-11-22 02:09:32] 2025-11-22 07:09:03,458 | INFO     | [job] retrieve thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:03,461 | INFO     | [job] job monitor thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:03,462 | INFO     | [job] queue monitor thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:03,474 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:03,687 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:03,709 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:03,715 | INFO     | [job] validate thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:03,726 | INFO     | all job control threads have been joined
[2025-11-22 02:09:32] 2025-11-22 07:09:03,811 | INFO     | [data] control thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:04,342 | INFO     | [payload] failed_post thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:04,343 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:04,402 | INFO     | [payload] control thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:04,503 | INFO     | [data] copytool_out thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:04,635 | INFO     | [data] copytool_in thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:04,732 | INFO     | [job] control thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:05,034 | INFO     | [payload] validate_post thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:06,482 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 02:09:32] 2025-11-22 07:09:17,045 | INFO     | [monitor] cgroup control has ended
[2025-11-22 02:09:32] 2025-11-22 07:09:19,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140073960691520)>', '<ExcThread(monitor, started 140072691160832)>']
[2025-11-22 02:09:32] 2025-11-22 07:09:24,107 | INFO     | all workflow threads have been joined
[2025-11-22 02:09:32] 2025-11-22 07:09:24,107 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 02:09:32] 2025-11-22 07:09:24,108 | INFO     | traces error code: 0
[2025-11-22 02:09:32] 2025-11-22 07:09:24,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 02:09:32] 2025-11-22 07:09:32,448 | INFO     | PID=22099 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 02:09:32] 2025-11-22 07:09:32,449 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 02:09:32] 2025-11-22 07:09:32,449 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 02:09:32] 2025-11-22 07:09:32,449 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 02:09:32] 2025-11-22 07:09:32,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 02:09:32] 2025-11-22 07:09:32,449 | INFO     | [monitor] control thread has ended
[2025-11-22 02:09:32] 2025-11-22 07:09:32,575 [wrapper] ==== pilot stdout END ====
[2025-11-22 02:09:32] 2025-11-22 07:09:32,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 02:09:32] 2025-11-22 07:09:32,585 [wrapper] pilotpid: 22099
[2025-11-22 02:09:32] 2025-11-22 07:09:32,590 [wrapper] Pilot exit status: 0
[2025-11-22 02:09:32] 2025-11-22 07:09:32,607 [wrapper] pandaids: 6893885317
[2025-11-22 02:09:32] 2025-11-22 07:09:32,652 [wrapper] cleanup supervisor_pilot 25445 22100
[2025-11-22 02:09:32] 2025-11-22 07:09:32,657 [wrapper] Test setup, not cleaning
[2025-11-22 02:09:32] 2025-11-22 07:09:32,662 [wrapper] apfmon messages muted
[2025-11-22 02:09:32] 2025-11-22 07:09:32,667 [wrapper] ==== wrapper stdout END ====
[2025-11-22 02:09:32] 2025-11-22 07:09:32,672 [wrapper] ==== wrapper stderr END ====
[2025-11-22 02:09:32]  *** Error codes and diagnostics ***
[2025-11-22 02:09:32]     "exeErrorCode": 0,
[2025-11-22 02:09:32]     "exeErrorDiag": "",
[2025-11-22 02:09:32]     "pilotErrorCode": 0,
[2025-11-22 02:09:32]     "pilotErrorDiag": "",
[2025-11-22 02:09:32]  *** Listing of results directory ***
[2025-11-22 02:09:32] total 1312124
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 16:55 pilot3.tar.gz
[2025-11-22 02:09:32] -rwx------ 1 boincer umatlas     36292 Nov 20 17:00 runpilot2-wrapper.sh
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 17:00 queuedata.json
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas       100 Nov 21 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 02:09:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 21 13:41 run_atlas
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas       105 Nov 21 13:41 job.xml
[2025-11-22 02:09:32] -rw-r--r-- 2 boincer umatlas 407564414 Nov 21 13:41 EVNT.47493127._000937.pool.root.1
[2025-11-22 02:09:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 13:41 start_atlas.sh
[2025-11-22 02:09:32] drwxrwx--x 2 boincer umatlas      4096 Nov 21 13:41 shared
[2025-11-22 02:09:32] -rw-r--r-- 2 boincer umatlas    590098 Nov 21 13:41 input.tar.gz
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas         0 Nov 21 13:41 boinc_lockfile
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas      2786 Nov 21 13:41 pandaJob.out
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas        57 Nov 21 13:41 setup.sh.local
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas    989798 Nov 21 13:42 agis_schedconf.cvmfs.json
[2025-11-22 02:09:32] drwx------ 5 boincer umatlas      4096 Nov 21 13:42 pilot3
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas       532 Nov 22 01:57 boinc_task_state.xml
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas      5912 Nov 22 02:02 init_data.xml
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas 915827845 Nov 22 02:07 HITS.47523449._009369.pool.root.1
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas   1526164 Nov 22 02:08 agis_ddmendpoints.agis.ALL.json
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas   1980893 Nov 22 02:08 log.47523449._009369.job.log.tgz.1
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas      8404 Nov 22 02:09 heartbeat.json
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 22 02:09 boinc_mmap_file
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas        29 Nov 22 02:09 wrapper_checkpoint.txt
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas        95 Nov 22 02:09 pilot_heartbeat.json
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas       745 Nov 22 02:09 pilotlog.txt
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas   6172764 Nov 22 02:09 log.47523449._009369.job.log.1
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas       353 Nov 22 02:09 output.list
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas       620 Nov 22 02:09 runtime_log
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas   8171520 Nov 22 02:09 result.tar.gz
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas       668 Nov 22 02:09 XOKMDmasRg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLbIKDmOvw5An.diag
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas      9343 Nov 22 02:09 runtime_log.err
[2025-11-22 02:09:32] -rw-r--r-- 1 boincer umatlas     21751 Nov 22 02:09 stderr.txt
[2025-11-22 02:09:32] HITS file was successfully produced:
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas 915827845 Nov 22 02:07 shared/HITS.pool.root.1
[2025-11-22 02:09:32]  *** Contents of shared directory: ***
[2025-11-22 02:09:32] total 1300960
[2025-11-22 02:09:32] -rw-r--r-- 2 boincer umatlas 407564414 Nov 21 13:41 ATLAS.root_0
[2025-11-22 02:09:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 21 13:41 start_atlas.sh
[2025-11-22 02:09:32] -rw-r--r-- 2 boincer umatlas    590098 Nov 21 13:41 input.tar.gz
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas 915827845 Nov 22 02:07 HITS.pool.root.1
[2025-11-22 02:09:32] -rw------- 1 boincer umatlas   8171520 Nov 22 02:09 result.tar.gz
02:09:34 (18409): run_atlas exited; CPU time 343205.641511
02:09:34 (18409): called boinc_finish(0)

</stderr_txt>
]]>

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