Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:39:49 (3197672): wrapper (7.7.26015): starting
19:39:49 (3197672): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 19:39:49] Arguments: --nthreads 3
[2025-11-21 19:39:49] Threads: 3
[2025-11-21 19:39:49] Checking for CVMFS
[2025-11-21 19:39:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 19:39:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 19:39:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 19:39:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 19:39:49] 2.9.2.0 16720 1786 82808 153128 0 252 34534766 36864000 0 130560 0 22144673 100.000 42806 1749 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 19:39:49] CVMFS is ok
[2025-11-21 19:39:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 19:39:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 19:39:49] Further information can be found at the LHC@home message board.
[2025-11-21 19:39:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 19:39:49] Checking for apptainer binary...
[2025-11-21 19:39:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 19:39:49] Running /usr/bin/apptainer --version
[2025-11-21 19:39:49] apptainer version 1.4.1-1.1
[2025-11-21 19:39:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 19:39:49] thA335
[2025-11-21 19:39:49] apptainer works
[2025-11-21 19:39:50] Set ATHENA_PROC_NUMBER=3
[2025-11-21 19:39:50] Set ATHENA_CORE_NUMBER=3
[2025-11-21 19:39:50] Starting ATLAS job with PandaID=6894259522
[2025-11-21 19:39:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:44:09]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:44:09] 2025-11-21 18:43:21,414 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:44:09] 2025-11-21 18:43:21,414 | INFO     | update_server=False
[2025-11-21 19:44:09] 2025-11-21 18:43:21,414 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:44:09] 2025-11-21 18:43:21,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:44:09] 2025-11-21 18:43:21,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:44:09] 2025-11-21 18:43:21,415 | INFO     | aborting loop
[2025-11-21 19:44:09] 2025-11-21 18:43:22,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:44:09] 2025-11-21 18:43:22,149 | INFO     | all job control threads have been joined
[2025-11-21 19:44:09] 2025-11-21 18:43:22,282 | INFO     | all data control threads have been joined
[2025-11-21 19:44:09] 2025-11-21 18:43:22,420 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:22,421 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:22,421 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:22,623 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:22,711 | INFO     | all payload control threads have been joined
[2025-11-21 19:44:09] 2025-11-21 18:43:22,995 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,155 | INFO     | [job] control thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,288 | INFO     | [data] control thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,455 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,615 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,664 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,671 | INFO     | [job] validate thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,716 | INFO     | [payload] control thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,750 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:23,817 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:24,084 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:24,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:44:09] 2025-11-21 18:43:28,382 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:44:09] 2025-11-21 18:43:51,598 | INFO     | PID=3201414 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:44:09] 2025-11-21 18:43:51,599 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:44:09] 2025-11-21 18:43:51,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:44:09] 2025-11-21 18:43:51,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:44:09] 2025-11-21 18:44:02,488 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:44:09] 2025-11-21 18:44:04,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139893697165120)>', '<ExcThread(monitor, started 139892973623040)>']
[2025-11-21 19:44:09] 2025-11-21 18:44:04,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:44:09] 2025-11-21 18:44:04,666 | INFO     | [monitor] control thread has ended
[2025-11-21 19:44:09] 2025-11-21 18:44:09,228 | INFO     | all workflow threads have been joined
[2025-11-21 19:44:09] 2025-11-21 18:44:09,228 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:44:09] 2025-11-21 18:44:09,229 | INFO     | traces error code: 0
[2025-11-21 19:44:09] 2025-11-21 18:44:09,229 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:44:09] 2025-11-21 18:44:09,274 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:44:09] 2025-11-21 18:44:09,277 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:44:09] 2025-11-21 18:44:09,280 [wrapper] pilotpid: 3201414
[2025-11-21 19:44:09] 2025-11-21 18:44:09,283 [wrapper] Pilot exit status: 0
[2025-11-21 19:44:09] 2025-11-21 18:44:09,290 [wrapper] pandaids: 6894259522
[2025-11-21 19:44:09] 2025-11-21 18:44:09,306 [wrapper] cleanup supervisor_pilot 3201420 3201415
[2025-11-21 19:44:09] 2025-11-21 18:44:09,309 [wrapper] Test setup, not cleaning
[2025-11-21 19:44:09] 2025-11-21 18:44:09,312 [wrapper] apfmon messages muted
[2025-11-21 19:44:09] 2025-11-21 18:44:09,314 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:44:09] 2025-11-21 18:44:09,317 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:44:09]  *** Error codes and diagnostics ***
[2025-11-21 19:44:09]     "exeErrorCode": 65,
[2025-11-21 19:44:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 19:44:09]     "pilotErrorCode": 1305,
[2025-11-21 19:44:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 19:44:09]  *** Listing of results directory ***
[2025-11-21 19:44:09] total 406736
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc      5112 Nov 21 05:29 queuedata.json
[2025-11-21 19:44:09] -rwx------ 1 boinc boinc     36292 Nov 21 05:31 runpilot2-wrapper.sh
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc       100 Nov 21 19:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:44:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 19:39 run_atlas
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc       105 Nov 21 19:39 job.xml
[2025-11-21 19:44:09] -rw-r--r-- 2 boinc boinc 412303623 Nov 21 19:39 EVNT.47493127._002187.pool.root.1
[2025-11-21 19:44:09] -rw-r--r-- 2 boinc boinc    590104 Nov 21 19:39 input.tar.gz
[2025-11-21 19:44:09] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:39 start_atlas.sh
[2025-11-21 19:44:09] drwxrwx--x 2 boinc boinc      4096 Nov 21 19:39 shared
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc         0 Nov 21 19:39 boinc_setup_complete
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc      6194 Nov 21 19:39 init_data.xml
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc         0 Nov 21 19:39 boinc_lockfile
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc      2785 Nov 21 19:39 pandaJob.out
[2025-11-21 19:44:09] -rw------- 1 boinc boinc    989817 Nov 21 19:40 agis_schedconf.cvmfs.json
[2025-11-21 19:44:09] -rw------- 1 boinc boinc   1526164 Nov 21 19:40 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:44:09] drwx------ 5 boinc boinc      4096 Nov 21 19:40 pilot3
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc       523 Nov 21 19:40 boinc_task_state.xml
[2025-11-21 19:44:09] -rw------- 1 boinc boinc       958 Nov 21 19:41 memory_monitor_summary.json
[2025-11-21 19:44:09] -rw------- 1 boinc boinc     54355 Nov 21 19:41 log.47533967._001585.job.log.tgz.1
[2025-11-21 19:44:09] -rw------- 1 boinc boinc        95 Nov 21 19:43 pilot_heartbeat.json
[2025-11-21 19:44:09] -rw------- 1 boinc boinc      8402 Nov 21 19:43 heartbeat.json
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc        22 Nov 21 19:44 wrapper_checkpoint.txt
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc      8192 Nov 21 19:44 boinc_mmap_file
[2025-11-21 19:44:09] -rw------- 1 boinc boinc      4752 Nov 21 19:44 pilotlog.txt
[2025-11-21 19:44:09] -rw------- 1 boinc boinc     93761 Nov 21 19:44 log.47533967._001585.job.log.1
[2025-11-21 19:44:09] -rw------- 1 boinc boinc       186 Nov 21 19:44 output.list
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc       620 Nov 21 19:44 runtime_log
[2025-11-21 19:44:09] -rw------- 1 boinc boinc    163840 Nov 21 19:44 result.tar.gz
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc      8744 Nov 21 19:44 runtime_log.err
[2025-11-21 19:44:09] -rw------- 1 boinc boinc       649 Nov 21 19:44 c6oNDmYzXg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm10IKDmUh5sLn.diag
[2025-11-21 19:44:09] -rw-r--r-- 1 boinc boinc      7894 Nov 21 19:44 stderr.txt
[2025-11-21 19:44:09] No HITS result produced
[2025-11-21 19:44:09]  *** Contents of shared directory: ***
[2025-11-21 19:44:09] total 403404
[2025-11-21 19:44:09] -rw-r--r-- 2 boinc boinc 412303623 Nov 21 19:39 ATLAS.root_0
[2025-11-21 19:44:09] -rw-r--r-- 2 boinc boinc    590104 Nov 21 19:39 input.tar.gz
[2025-11-21 19:44:09] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:39 start_atlas.sh
[2025-11-21 19:44:09] -rw------- 1 boinc boinc    163840 Nov 21 19:44 result.tar.gz
19:44:11 (3197672): run_atlas exited; CPU time 32.247679
19:44:11 (3197672): called boinc_finish(0)

</stderr_txt>
]]>

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