Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:40:57 (1279042): wrapper (7.7.26015): starting
13:40:57 (1279042): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 13:40:57] Arguments: --nthreads 8
[2025-11-21 13:40:57] Threads: 8
[2025-11-21 13:40:57] Checking for CVMFS
[2025-11-21 13:40:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 13:40:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 13:40:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 13:40:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 13:40:58] 2.13.2.0 2610926 2013 60896 153139 0 81 35430107 39288833 3768 16776704 0 3459013 99.994 75575 7519 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 13:40:58] CVMFS is ok
[2025-11-21 13:40:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 13:40:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 13:40:58] Further information can be found at the LHC@home message board.
[2025-11-21 13:40:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 13:40:58] Checking for apptainer binary...
[2025-11-21 13:40:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 13:40:58] Running /usr/bin/apptainer --version
[2025-11-21 13:40:58] apptainer version 1.4.4-1.el9
[2025-11-21 13:40:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 13:40:58] c-210-16.aglt2.org
[2025-11-21 13:40:58] apptainer works
[2025-11-21 13:40:58] Set ATHENA_PROC_NUMBER=8
[2025-11-21 13:40:58] Set ATHENA_CORE_NUMBER=8
[2025-11-21 13:40:58] Starting ATLAS job with PandaID=6893885889
[2025-11-21 13:40:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:40:03 (1279042): BOINC client no longer exists - exiting
22:40:03 (1279042): timer handler: client dead, exiting
22:46:40 (2002082): wrapper (7.7.26015): starting
22:46:40 (2002082): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 22:46:40] Arguments: --nthreads 8
[2025-11-21 22:46:40] Threads: 8
[2025-11-21 22:46:40] This job has been restarted, cleaning up previous attempt
[2025-11-21 22:46:40] Checking for CVMFS
[2025-11-21 22:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:46:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:46:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:46:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:46:41] 2.13.2.0 2610926 2559 64992 153157 3 90 36118499 39288832 0 16776704 0 4254756 99.995 96565 9062 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 22:46:41] CVMFS is ok
[2025-11-21 22:46:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 22:46:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 22:46:41] Further information can be found at the LHC@home message board.
[2025-11-21 22:46:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:46:41] Checking for apptainer binary...
[2025-11-21 22:46:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 22:46:41] Running /usr/bin/apptainer --version
[2025-11-21 22:46:41] apptainer version 1.4.4-1.el9
[2025-11-21 22:46:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:46:41] c-210-16.aglt2.org
[2025-11-21 22:46:41] apptainer works
[2025-11-21 22:46:41] Set ATHENA_PROC_NUMBER=8
[2025-11-21 22:46:41] Set ATHENA_CORE_NUMBER=8
[2025-11-21 22:46:41] Starting ATLAS job with PandaID=6893885889
[2025-11-21 22:46:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 09:30:01]  *** The last 200 lines of the pilot log: ***
[2025-11-22 09:30:01] 2025-11-22 14:29:26,197 | INFO     | monitor loop #2815: job 0:6893885889 is in state 'finished'
[2025-11-22 09:30:01] 2025-11-22 14:29:26,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,440 | INFO     | time since job start (38559s) is within the limit (172800.0s)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,809 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 09:30:01] 2025-11-22 14:29:27,815 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2620.2996499999995
[2025-11-22 09:30:01] 2025-11-22 14:29:27,822 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893885889/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,823 | INFO     | extracted standard info from prmon json
[2025-11-22 09:30:01] 2025-11-22 14:29:27,823 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 09:30:01] 2025-11-22 14:29:27,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 09:30:01] 2025-11-22 14:29:27,835 | INFO     | fitting pss+swap vs Time
[2025-11-22 09:30:01] 2025-11-22 14:29:27,836 | INFO     | sum of square deviations: 78276517362.7347
[2025-11-22 09:30:01] 2025-11-22 14:29:27,846 | INFO     | sum of deviations: 787948817832.9237
[2025-11-22 09:30:01] 2025-11-22 14:29:27,846 | INFO     | mean x: 1763802473.78481
[2025-11-22 09:30:01] 2025-11-22 14:29:27,846 | INFO     | mean y: 2932380.9920886075
[2025-11-22 09:30:01] 2025-11-22 14:29:27,846 | INFO     | intersect: -17751895259.962296
[2025-11-22 09:30:01] 2025-11-22 14:29:27,847 | INFO     | chi2: 4.5009575030023345
[2025-11-22 09:30:01] 2025-11-22 14:29:27,848 | INFO     | sum of square deviations: 76433412122.32565
[2025-11-22 09:30:01] 2025-11-22 14:29:27,858 | INFO     | sum of deviations: 975792418047.1427
[2025-11-22 09:30:01] 2025-11-22 14:29:27,859 | INFO     | mean x: 1763802321.2870812
[2025-11-22 09:30:01] 2025-11-22 14:29:27,859 | INFO     | mean y: 2947899.8325358853
[2025-11-22 09:30:01] 2025-11-22 14:29:27,859 | INFO     | intersect: -22514755866.831596
[2025-11-22 09:30:01] 2025-11-22 14:29:27,860 | INFO     | chi2: 1.8002605680895094
[2025-11-22 09:30:01] 2025-11-22 14:29:27,860 | INFO     | current chi2=1.8002605680895094 (change=60.00272015701865 %)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,861 | INFO     | sum of square deviations: 74619470219.40987
[2025-11-22 09:30:01] 2025-11-22 14:29:27,871 | INFO     | sum of deviations: 1004272353582.3319
[2025-11-22 09:30:01] 2025-11-22 14:29:27,871 | INFO     | mean x: 1763802168.7893891
[2025-11-22 09:30:01] 2025-11-22 14:29:27,871 | INFO     | mean y: 2950280.3231511256
[2025-11-22 09:30:01] 2025-11-22 14:29:27,871 | INFO     | intersect: -23735328081.8165
[2025-11-22 09:30:01] 2025-11-22 14:29:27,872 | INFO     | chi2: 1.5778828526015027
[2025-11-22 09:30:01] 2025-11-22 14:29:27,872 | INFO     | current chi2=1.5778828526015027 (change=12.352529374344993 %)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,872 | INFO     | right removable region: 621
[2025-11-22 09:30:01] 2025-11-22 14:29:27,873 | INFO     | sum of square deviations: 76433302322.32559
[2025-11-22 09:30:01] 2025-11-22 14:29:27,884 | INFO     | sum of deviations: 660782999558.2964
[2025-11-22 09:30:01] 2025-11-22 14:29:27,884 | INFO     | mean x: 1763802626.2870812
[2025-11-22 09:30:01] 2025-11-22 14:29:27,884 | INFO     | mean y: 2942872.9872408295
[2025-11-22 09:30:01] 2025-11-22 14:29:27,884 | INFO     | intersect: -15245525459.727297
[2025-11-22 09:30:01] 2025-11-22 14:29:27,885 | INFO     | chi2: 3.11419097435878
[2025-11-22 09:30:01] 2025-11-22 14:29:27,885 | INFO     | current chi2=3.11419097435878 (change=30.81047816422441 %)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,886 | INFO     | sum of square deviations: 74619250619.40988
[2025-11-22 09:30:01] 2025-11-22 14:29:27,896 | INFO     | sum of deviations: 615100645656.1725
[2025-11-22 09:30:01] 2025-11-22 14:29:27,897 | INFO     | mean x: 1763802778.7893891
[2025-11-22 09:30:01] 2025-11-22 14:29:27,897 | INFO     | mean y: 2946711.268488746
[2025-11-22 09:30:01] 2025-11-22 14:29:27,897 | INFO     | intersect: -14536414365.634327
[2025-11-22 09:30:01] 2025-11-22 14:29:27,898 | INFO     | chi2: 3.0575591997150458
[2025-11-22 09:30:01] 2025-11-22 14:29:27,898 | INFO     | current chi2=3.0575591997150458 (change=1.8185068003221925 %)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,898 | INFO     | left removable region: 20
[2025-11-22 09:30:01] 2025-11-22 14:29:27,899 | INFO     | sum of square deviations: 67313839894.45945
[2025-11-22 09:30:01] 2025-11-22 14:29:27,908 | INFO     | sum of deviations: 763702336570.8502
[2025-11-22 09:30:01] 2025-11-22 14:29:27,908 | INFO     | mean x: 1763802748.2928452
[2025-11-22 09:30:01] 2025-11-22 14:29:27,908 | INFO     | mean y: 2970635.0349417636
[2025-11-22 09:30:01] 2025-11-22 14:29:27,908 | INFO     | intersect: -20008074377.897163
[2025-11-22 09:30:01] 2025-11-22 14:29:27,909 | INFO     | chi2: 0.10175807551061557
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | current memory leak: 11.35 B/s (using 601 data points, chi2=0.10)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | could have reported an average CPU frequency of 2614 MHz (25 samples)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | ..............................
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | . Timing measurements:
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | . get job = 0 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | . initial setup = 2 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | . payload setup = 3 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,910 | INFO     | . stage-in = 0 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,911 | INFO     | . payload execution = 38527 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,911 | INFO     | . stage-out = 3 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,911 | INFO     | . log creation = 0 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,911 | INFO     | ..............................
[2025-11-22 09:30:01] 2025-11-22 14:29:27,965 | INFO     | 
[2025-11-22 09:30:01] 2025-11-22 14:29:27,965 | INFO     | job summary report
[2025-11-22 09:30:01] 2025-11-22 14:29:27,965 | INFO     | --------------------------------------------------
[2025-11-22 09:30:01] 2025-11-22 14:29:27,965 | INFO     | PanDA job id: 6893885889
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | task id: 47523449
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | errors: (none)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | pilot state: finished 
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | transexitcode: 0
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | exeerrorcode: 0
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | exeerrordiag: 
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | exitcode: 0
[2025-11-22 09:30:01] 2025-11-22 14:29:27,966 | INFO     | exitmsg: OK
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | cpuconsumptiontime: 293756 s
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | nevents: 1000
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | neventsw: 0
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | pid: 2057840
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | pgrp: 2057840
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | corecount: 8
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | event service: False
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | sizes: {0: 2298630, 1: 2298829, 3: 2299091, 11: 2299119, 38534: 2342011, 38535: 2342010, 38540: 2351216, 38541: 2351272, 38546: 2351582}
[2025-11-22 09:30:01] 2025-11-22 14:29:27,967 | INFO     | --------------------------------------------------
[2025-11-22 09:30:01] 2025-11-22 14:29:27,968 | INFO     | 
[2025-11-22 09:30:01] 2025-11-22 14:29:27,968 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 09:30:01] 2025-11-22 14:29:27,981 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,982 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,983 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,984 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 09:30:01] 2025-11-22 14:29:27,984 | INFO     | job 6893885889 has completed (purged errors)
[2025-11-22 09:30:01] 2025-11-22 14:29:27,984 | INFO     | overall cleanup function is called
[2025-11-22 09:30:01] 2025-11-22 14:29:29,000 | INFO     | --- collectZombieJob: --- 10, [2057840]
[2025-11-22 09:30:01] 2025-11-22 14:29:29,000 | INFO     | zombie collector waiting for pid 2057840
[2025-11-22 09:30:01] 2025-11-22 14:29:29,000 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 09:30:01] 2025-11-22 14:29:29,000 | INFO     | collected zombie processes
[2025-11-22 09:30:01] 2025-11-22 14:29:29,000 | INFO     | will attempt to kill all subprocesses of pid=2057840
[2025-11-22 09:30:01] 2025-11-22 14:29:29,241 | INFO     | process IDs to be killed: [2057840] (in reverse order)
[2025-11-22 09:30:01] 2025-11-22 14:29:29,307 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 09:30:01] 2025-11-22 14:29:29,308 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 09:30:01] 2025-11-22 14:29:29,315 | INFO     | did not find any defunct processes belonging to 2057840
[2025-11-22 09:30:01] 2025-11-22 14:29:29,321 | INFO     | did not find any defunct processes belonging to 2057840
[2025-11-22 09:30:01] 2025-11-22 14:29:29,322 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 09:30:01] 2025-11-22 14:29:29,322 | INFO     | ready for new job
[2025-11-22 09:30:01] 2025-11-22 14:29:29,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 09:30:01] 2025-11-22 14:29:29,326 | INFO     | ***************************************
[2025-11-22 09:30:01] 2025-11-22 14:29:29,326 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 09:30:01] 2025-11-22 14:29:29,326 | INFO     | ***************************************
[2025-11-22 09:30:01] 2025-11-22 14:29:29,326 | INFO     | 
[2025-11-22 09:30:01] 2025-11-22 14:29:29,328 | INFO     | architecture information:
[2025-11-22 09:30:01] 2025-11-22 14:29:29,329 | INFO     | executing command: cat /etc/os-release
[2025-11-22 09:30:01] 2025-11-22 14:29:29,340 | INFO     | cat /etc/os-release:
[2025-11-22 09:30:01] NAME="CentOS Linux"
[2025-11-22 09:30:01] VERSION="7 (Core)"
[2025-11-22 09:30:01] ID="centos"
[2025-11-22 09:30:01] ID_LIKE="rhel fedora"
[2025-11-22 09:30:01] VERSION_ID="7"
[2025-11-22 09:30:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 09:30:01] ANSI_COLOR="0;31"
[2025-11-22 09:30:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 09:30:01] HOME_URL="https://www.centos.org/"
[2025-11-22 09:30:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 09:30:01] 
[2025-11-22 09:30:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 09:30:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 09:30:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 09:30:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 09:30:01] 
[2025-11-22 09:30:01] 2025-11-22 14:29:29,340 | INFO     | ***************************************
[2025-11-22 09:30:01] 2025-11-22 14:29:29,844 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 09:30:01] 2025-11-22 14:29:29,858 | INFO     | sufficient remaining disk space (47689236480 B)
[2025-11-22 09:30:01] 2025-11-22 14:29:29,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 09:30:01] 2025-11-22 14:29:29,858 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 09:30:01] 2025-11-22 14:29:29,859 | INFO     | update_server=False
[2025-11-22 09:30:01] 2025-11-22 14:29:29,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 09:30:01] 2025-11-22 14:29:29,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:30:01] 2025-11-22 14:29:29,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 09:30:01] 2025-11-22 14:29:29,859 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 09:30:01] 2025-11-22 14:29:29,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 09:30:01] 2025-11-22 14:29:29,860 | INFO     | aborting loop
[2025-11-22 09:30:01] 2025-11-22 14:29:29,879 | INFO     | all payload control threads have been joined
[2025-11-22 09:30:01] 2025-11-22 14:29:30,045 | INFO     | all data control threads have been joined
[2025-11-22 09:30:01] 2025-11-22 14:29:30,531 | INFO     | all job control threads have been joined
[2025-11-22 09:30:01] 2025-11-22 14:29:30,864 | INFO     | [job] retrieve thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:30,865 | INFO     | [job] queue monitor thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:30,865 | INFO     | [job] job monitor thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:30,873 | INFO     | [job] validate thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:30,885 | INFO     | [payload] control thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:30,911 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:31,048 | INFO     | [data] control thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:31,378 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:31,484 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:31,536 | INFO     | [job] control thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:31,755 | INFO     | [data] copytool_in thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:31,865 | INFO     | [data] copytool_out thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:32,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:32,431 | INFO     | [payload] validate_post thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:32,466 | INFO     | [payload] failed_post thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:33,865 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 09:30:01] 2025-11-22 14:29:52,857 | INFO     | [monitor] cgroup control has ended
[2025-11-22 09:30:01] 2025-11-22 14:29:54,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645295527744)>', '<ExcThread(monitor, started 139644645648128)>']
[2025-11-22 09:30:01] 2025-11-22 14:29:59,767 | INFO     | all workflow threads have been joined
[2025-11-22 09:30:01] 2025-11-22 14:29:59,768 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 09:30:01] 2025-11-22 14:29:59,768 | INFO     | traces error code: 0
[2025-11-22 09:30:01] 2025-11-22 14:29:59,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 09:30:01] 2025-11-22 14:30:00,789 | INFO     | PID=2020578 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 09:30:01] 2025-11-22 14:30:00,789 | INFO     | .. there are 5 such processes running
[2025-11-22 09:30:01] 2025-11-22 14:30:00,789 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 09:30:01] 2025-11-22 14:30:00,790 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 09:30:01] 2025-11-22 14:30:00,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 09:30:01] 2025-11-22 14:30:00,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 09:30:01] 2025-11-22 14:30:00,790 | INFO     | [monitor] control thread has ended
[2025-11-22 09:30:01] 2025-11-22 14:30:00,913 [wrapper] ==== pilot stdout END ====
[2025-11-22 09:30:01] 2025-11-22 14:30:00,915 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 09:30:01] 2025-11-22 14:30:00,918 [wrapper] pilotpid: 2020578
[2025-11-22 09:30:01] 2025-11-22 14:30:00,920 [wrapper] Pilot exit status: 0
[2025-11-22 09:30:01] 2025-11-22 14:30:00,928 [wrapper] pandaids: 6893885889 6893885889
[2025-11-22 09:30:01] 2025-11-22 14:30:00,970 [wrapper] cleanup supervisor_pilot 2888912 2020582
[2025-11-22 09:30:01] 2025-11-22 14:30:00,972 [wrapper] Test setup, not cleaning
[2025-11-22 09:30:01] 2025-11-22 14:30:00,975 [wrapper] apfmon messages muted
[2025-11-22 09:30:01] 2025-11-22 14:30:00,977 [wrapper] ==== wrapper stdout END ====
[2025-11-22 09:30:01] 2025-11-22 14:30:00,980 [wrapper] ==== wrapper stderr END ====
[2025-11-22 09:30:01]  *** Error codes and diagnostics ***
[2025-11-22 09:30:01]     "exeErrorCode": 0,
[2025-11-22 09:30:01]     "exeErrorDiag": "",
[2025-11-22 09:30:01]     "pilotErrorCode": 0,
[2025-11-22 09:30:01]     "pilotErrorDiag": "",
[2025-11-22 09:30:01]  *** Listing of results directory ***
[2025-11-22 09:30:01] total 1720860
[2025-11-22 09:30:01] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 16:55 pilot3.tar.gz
[2025-11-22 09:30:01] -rwx------. 1 boincer umatlas     36292 Nov 20 17:08 runpilot2-wrapper.sh
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 17:08 queuedata.json
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas       100 Nov 21 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 09:30:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 13:40 run_atlas
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas       105 Nov 21 13:40 job.xml
[2025-11-22 09:30:01] -rw-r--r--. 3 boincer umatlas 411229264 Nov 21 13:40 EVNT.47493127._000942.pool.root.1
[2025-11-22 09:30:01] -rw-r--r--. 3 boincer umatlas 411229264 Nov 21 13:40 ATLAS.root_0
[2025-11-22 09:30:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 13:40 start_atlas.sh
[2025-11-22 09:30:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 13:40 shared
[2025-11-22 09:30:01] -rw-r--r--. 2 boincer umatlas    590092 Nov 21 13:40 input.tar.gz
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas         0 Nov 21 13:40 boinc_lockfile
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas      2783 Nov 21 22:46 pandaJob.out
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas        57 Nov 21 22:46 setup.sh.local
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas    989752 Nov 21 22:46 agis_schedconf.cvmfs.json
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas       533 Nov 22 09:20 boinc_task_state.xml
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas      6664 Nov 22 09:22 init_data.xml
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas 921134465 Nov 22 09:28 HITS.47523449._009411.pool.root.1
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas        96 Nov 22 09:29 pilot_heartbeat.json
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas      1048 Nov 22 09:29 memory_monitor_summary.json
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas   1526164 Nov 22 09:29 agis_ddmendpoints.agis.ALL.json
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas   1883866 Nov 22 09:29 log.47523449._009411.job.log.tgz.1
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas      8628 Nov 22 09:29 heartbeat.json
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 09:29 boinc_mmap_file
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas        29 Nov 22 09:29 wrapper_checkpoint.txt
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas       822 Nov 22 09:30 pilotlog.txt
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas   5434810 Nov 22 09:30 log.47523449._009411.job.log.1
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas       353 Nov 22 09:30 output.list
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas       620 Nov 22 09:30 runtime_log
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas   7342080 Nov 22 09:30 result.tar.gz
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas       785 Nov 22 09:30 YmjKDmp0Rg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5bIKDmlT0pum.diag
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas      9428 Nov 22 09:30 runtime_log.err
[2025-11-22 09:30:01] -rw-r--r--. 1 boincer umatlas     23621 Nov 22 09:30 stderr.txt
[2025-11-22 09:30:01] HITS file was successfully produced:
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas 921134465 Nov 22 09:28 shared/HITS.pool.root.1
[2025-11-22 09:30:01]  *** Contents of shared directory: ***
[2025-11-22 09:30:01] total 1308916
[2025-11-22 09:30:01] -rw-r--r--. 3 boincer umatlas 411229264 Nov 21 13:40 ATLAS.root_0
[2025-11-22 09:30:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 13:40 start_atlas.sh
[2025-11-22 09:30:01] -rw-r--r--. 2 boincer umatlas    590092 Nov 21 13:40 input.tar.gz
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas 921134465 Nov 22 09:28 HITS.pool.root.1
[2025-11-22 09:30:01] -rw-------. 1 boincer umatlas   7342080 Nov 22 09:30 result.tar.gz
09:30:02 (2002082): run_atlas exited; CPU time 293914.914961
09:30:02 (2002082): called boinc_finish(0)

</stderr_txt>
]]>

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