Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:58:23 (2322995): wrapper (7.7.26015): starting
18:58:23 (2322995): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 18:58:24] Arguments: --nthreads 4
[2025-11-27 18:58:24] Threads: 4
[2025-11-27 18:58:24] Checking for CVMFS
[2025-11-27 18:58:24] No cvmfs_config command found, will try listing directly
[2025-11-27 18:58:24] CVMFS is ok
[2025-11-27 18:58:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 18:58:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 18:58:24] Further information can be found at the LHC@home message board.
[2025-11-27 18:58:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 18:58:24] Checking for apptainer binary...
[2025-11-27 18:58:24] which: no apptainer in ((null))
[2025-11-27 18:58:24] apptainer is not installed, using version from CVMFS
[2025-11-27 18:58:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 18:58:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-27 18:58:24] apptainer works
[2025-11-27 18:58:24] Set ATHENA_PROC_NUMBER=4
[2025-11-27 18:58:24] Set ATHENA_CORE_NUMBER=4
[2025-11-27 18:58:24] Starting ATLAS job with PandaID=6893887090
[2025-11-27 18:58:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 10:02:06]  *** The last 200 lines of the pilot log: ***
[2025-11-28 10:02:06] 2025-11-28 09:00:08,320 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/PanDA_Pilot-6893887090/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,321 | INFO     | extracted standard info from prmon json
[2025-11-28 10:02:06] 2025-11-28 09:00:08,321 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 10:02:06] 2025-11-28 09:00:08,321 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 10:02:06] 2025-11-28 09:00:08,335 | INFO     | fitting pss+swap vs Time
[2025-11-28 10:02:06] 2025-11-28 09:00:08,336 | INFO     | sum of square deviations: 215664685497.5
[2025-11-28 10:02:06] 2025-11-28 09:00:08,354 | INFO     | sum of deviations: 591134695188.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,354 | INFO     | mean x: 1764293346.5
[2025-11-28 10:02:06] 2025-11-28 09:00:08,355 | INFO     | mean y: 2277710.0248307
[2025-11-28 10:02:06] 2025-11-28 09:00:08,355 | INFO     | intersect: -4833632291.650357
[2025-11-28 10:02:06] 2025-11-28 09:00:08,356 | INFO     | chi2: 3.774499931833256
[2025-11-28 10:02:06] 2025-11-28 09:00:08,357 | INFO     | sum of square deviations: 212034040680.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,375 | INFO     | sum of deviations: 757955627733.9996
[2025-11-28 10:02:06] 2025-11-28 09:00:08,375 | INFO     | mean x: 1764293194.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,375 | INFO     | mean y: 2284709.7536889897
[2025-11-28 10:02:06] 2025-11-28 09:00:08,375 | INFO     | intersect: -6304513722.594581
[2025-11-28 10:02:06] 2025-11-28 09:00:08,376 | INFO     | chi2: 1.8633145853358124
[2025-11-28 10:02:06] 2025-11-28 09:00:08,376 | INFO     | current chi2=1.8633145853358124 (change=50.63413381939552 %)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,377 | INFO     | sum of square deviations: 208444373375.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,395 | INFO     | sum of deviations: 755153914386.9999
[2025-11-28 10:02:06] 2025-11-28 09:00:08,396 | INFO     | mean x: 1764293041.5
[2025-11-28 10:02:06] 2025-11-28 09:00:08,396 | INFO     | mean y: 2284589.7671232875
[2025-11-28 10:02:06] 2025-11-28 09:00:08,396 | INFO     | intersect: -6389410109.602791
[2025-11-28 10:02:06] 2025-11-28 09:00:08,397 | INFO     | chi2: 1.8543403302382115
[2025-11-28 10:02:06] 2025-11-28 09:00:08,397 | INFO     | current chi2=1.8543403302382115 (change=0.48162855420269735 %)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,397 | INFO     | right removable region: 875
[2025-11-28 10:02:06] 2025-11-28 09:00:08,398 | INFO     | sum of square deviations: 212034040680.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,416 | INFO     | sum of deviations: 435979345240.9998
[2025-11-28 10:02:06] 2025-11-28 09:00:08,416 | INFO     | mean x: 1764293499.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,416 | INFO     | mean y: 2284213.768444949
[2025-11-28 10:02:06] 2025-11-28 09:00:08,416 | INFO     | intersect: -3625414065.433035
[2025-11-28 10:02:06] 2025-11-28 09:00:08,417 | INFO     | chi2: 2.0127699144582936
[2025-11-28 10:02:06] 2025-11-28 09:00:08,418 | INFO     | current chi2=2.0127699144582936 (change=46.67452773059924 %)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,419 | INFO     | sum of square deviations: 208444373375.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,436 | INFO     | sum of deviations: 425533139313.5
[2025-11-28 10:02:06] 2025-11-28 09:00:08,436 | INFO     | mean x: 1764293651.5
[2025-11-28 10:02:06] 2025-11-28 09:00:08,437 | INFO     | mean y: 2284656.8824200914
[2025-11-28 10:02:06] 2025-11-28 09:00:08,437 | INFO     | intersect: -3599469633.9039054
[2025-11-28 10:02:06] 2025-11-28 09:00:08,438 | INFO     | chi2: 2.0113246898572896
[2025-11-28 10:02:06] 2025-11-28 09:00:08,438 | INFO     | current chi2=2.0113246898572896 (change=0.07180277241936499 %)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,438 | INFO     | left removable region: 20
[2025-11-28 10:02:06] 2025-11-28 09:00:08,439 | INFO     | sum of square deviations: 193809996660.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,455 | INFO     | sum of deviations: 569310758249.9999
[2025-11-28 10:02:06] 2025-11-28 09:00:08,456 | INFO     | mean x: 1764293621.0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,456 | INFO     | mean y: 2292483.711111111
[2025-11-28 10:02:06] 2025-11-28 09:00:08,456 | INFO     | intersect: -5180264435.214063
[2025-11-28 10:02:06] 2025-11-28 09:00:08,457 | INFO     | chi2: 0.06325807486047035
[2025-11-28 10:02:06] 2025-11-28 09:00:08,457 | INFO     | current memory leak: 2.94 B/s (using 855 data points, chi2=0.06)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,458 | INFO     | could have reported an average CPU frequency of 2683 MHz (33 samples)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,458 | INFO     | ..............................
[2025-11-28 10:02:06] 2025-11-28 09:00:08,458 | INFO     | . Timing measurements:
[2025-11-28 10:02:06] 2025-11-28 09:00:08,458 | INFO     | . get job = 0 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,458 | INFO     | . initial setup = 1 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,458 | INFO     | . payload setup = 8 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,458 | INFO     | . stage-in = 0 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,459 | INFO     | . payload execution = 54043 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,459 | INFO     | . stage-out = 2 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,459 | INFO     | . log creation = 0 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,459 | INFO     | ..............................
[2025-11-28 10:02:06] 2025-11-28 09:00:08,558 | INFO     | 
[2025-11-28 10:02:06] 2025-11-28 09:00:08,558 | INFO     | job summary report
[2025-11-28 10:02:06] 2025-11-28 09:00:08,558 | INFO     | --------------------------------------------------
[2025-11-28 10:02:06] 2025-11-28 09:00:08,558 | INFO     | PanDA job id: 6893887090
[2025-11-28 10:02:06] 2025-11-28 09:00:08,558 | INFO     | task id: 47523449
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | errors: (none)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | pilot state: finished 
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | transexitcode: 0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | exeerrorcode: 0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | exeerrordiag: 
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | exitcode: 0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | exitmsg: OK
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | cpuconsumptiontime: 214059 s
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | nevents: 1000
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | neventsw: 0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | pid: 2337115
[2025-11-28 10:02:06] 2025-11-28 09:00:08,559 | INFO     | pgrp: 2337115
[2025-11-28 10:02:06] 2025-11-28 09:00:08,560 | INFO     | corecount: 4
[2025-11-28 10:02:06] 2025-11-28 09:00:08,560 | INFO     | event service: False
[2025-11-28 10:02:06] 2025-11-28 09:00:08,560 | INFO     | sizes: {0: 2284105, 1: 2284304, 8: 2284566, 11: 2284594, 54056: 2335562, 54059: 2344580, 54063: 2344764, 54071: 2345074}
[2025-11-28 10:02:06] 2025-11-28 09:00:08,560 | INFO     | --------------------------------------------------
[2025-11-28 10:02:06] 2025-11-28 09:00:08,560 | INFO     | 
[2025-11-28 10:02:06] 2025-11-28 09:00:08,560 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-11-28 10:02:06] 2025-11-28 09:00:08,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,592 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,592 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,592 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,592 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,592 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,594 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,594 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 10:02:06] 2025-11-28 09:00:08,594 | INFO     | job 6893887090 has completed (purged errors)
[2025-11-28 10:02:06] 2025-11-28 09:00:08,594 | INFO     | overall cleanup function is called
[2025-11-28 10:02:06] 2025-11-28 09:00:09,612 | INFO     | --- collectZombieJob: --- 10, [2337115]
[2025-11-28 10:02:06] 2025-11-28 09:00:09,612 | INFO     | zombie collector waiting for pid 2337115
[2025-11-28 10:02:06] 2025-11-28 09:00:09,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 10:02:06] 2025-11-28 09:00:09,613 | INFO     | collected zombie processes
[2025-11-28 10:02:06] 2025-11-28 09:00:09,613 | INFO     | will attempt to kill all subprocesses of pid=2337115
[2025-11-28 10:02:06] 2025-11-28 09:00:10,784 | INFO     | PID=2327355 has CPU usage=22.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-28 10:02:06] 2025-11-28 09:00:10,785 | INFO     | .. there are 7 such processes running
[2025-11-28 10:02:06] 2025-11-28 09:00:11,158 | INFO     | process IDs to be killed: [2337115] (in reverse order)
[2025-11-28 10:02:06] 2025-11-28 09:00:11,426 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 10:02:06] 2025-11-28 09:00:11,426 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 10:02:06] 2025-11-28 09:00:11,460 | INFO     | did not find any defunct processes belonging to 2337115
[2025-11-28 10:02:06] 2025-11-28 09:00:11,491 | INFO     | did not find any defunct processes belonging to 2337115
[2025-11-28 10:02:06] 2025-11-28 09:00:11,492 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 10:02:06] 2025-11-28 09:00:11,492 | INFO     | ready for new job
[2025-11-28 10:02:06] 2025-11-28 09:00:11,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 10:02:06] 2025-11-28 09:00:11,499 | INFO     | ***************************************
[2025-11-28 10:02:06] 2025-11-28 09:00:11,499 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 10:02:06] 2025-11-28 09:00:11,499 | INFO     | ***************************************
[2025-11-28 10:02:06] 2025-11-28 09:00:11,499 | INFO     | 
[2025-11-28 10:02:06] 2025-11-28 09:00:11,508 | INFO     | architecture information:
[2025-11-28 10:02:06] 2025-11-28 09:00:11,508 | INFO     | executing command: cat /etc/os-release
[2025-11-28 10:02:06] 2025-11-28 09:00:11,533 | INFO     | cat /etc/os-release:
[2025-11-28 10:02:06] NAME="CentOS Linux"
[2025-11-28 10:02:06] VERSION="7 (Core)"
[2025-11-28 10:02:06] ID="centos"
[2025-11-28 10:02:06] ID_LIKE="rhel fedora"
[2025-11-28 10:02:06] VERSION_ID="7"
[2025-11-28 10:02:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 10:02:06] ANSI_COLOR="0;31"
[2025-11-28 10:02:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 10:02:06] HOME_URL="https://www.centos.org/"
[2025-11-28 10:02:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 10:02:06] 
[2025-11-28 10:02:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 10:02:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 10:02:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 10:02:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 10:02:06] 
[2025-11-28 10:02:06] 2025-11-28 09:00:11,534 | INFO     | ***************************************
[2025-11-28 10:02:06] 2025-11-28 09:00:12,036 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-11-28 10:02:06] 2025-11-28 09:00:12,064 | INFO     | sufficient remaining disk space (3282489573376 B)
[2025-11-28 10:02:06] 2025-11-28 09:00:12,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 10:02:06] 2025-11-28 09:00:12,065 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 10:02:06] 2025-11-28 09:00:12,065 | INFO     | update_server=False
[2025-11-28 10:02:06] 2025-11-28 09:00:12,065 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 10:02:06] 2025-11-28 09:00:12,283 | INFO     | all job control threads have been joined
[2025-11-28 10:02:06] 2025-11-28 09:00:12,313 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 10:02:06] 2025-11-28 09:00:12,313 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 10:02:06] 2025-11-28 09:00:12,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:02:06] 2025-11-28 09:00:12,313 | INFO     | will abort loop
[2025-11-28 10:02:06] 2025-11-28 09:00:12,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 10:02:06] 2025-11-28 09:00:12,665 | INFO     | all data control threads have been joined
[2025-11-28 10:02:06] 2025-11-28 09:00:12,822 | INFO     | all payload control threads have been joined
[2025-11-28 10:02:06] 2025-11-28 09:00:13,071 | INFO     | [job] retrieve thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:13,288 | INFO     | [job] control thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:13,318 | INFO     | [job] job monitor thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:13,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 10:02:06] 2025-11-28 09:00:13,671 | INFO     | [data] control thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:13,826 | INFO     | [payload] control thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:13,960 | INFO     | [payload] validate_post thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,056 | INFO     | [payload] failed_post thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,134 | INFO     | [job] validate thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,224 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,224 | INFO     | [data] copytool_in thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,259 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,463 | INFO     | [data] copytool_out thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:14,572 | INFO     | [job] queue monitor thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:15,535 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 10:02:06] 2025-11-28 09:00:19,536 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:22,434 | INFO     | job.realtimelogging is not enabled
[2025-11-28 10:02:06] 2025-11-28 09:00:23,439 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 10:02:06] 2025-11-28 09:00:43,876 | INFO     | PID=2327355 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 10:02:06] 2025-11-28 09:00:43,876 | INFO     | .. there are 7 such processes running
[2025-11-28 10:02:06] 2025-11-28 09:00:43,877 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 10:02:06] 2025-11-28 09:00:43,877 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 10:02:06] 2025-11-28 09:00:43,877 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 10:02:06] 2025-11-28 09:01:06,434 | INFO     | [monitor] cgroup control has ended
[2025-11-28 10:02:06] 2025-11-28 09:01:06,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22582622476096)>', '<ExcThread(monitor, started 22582382262016)>']
[2025-11-28 10:02:06] 2025-11-28 09:01:06,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 10:02:06] 2025-11-28 09:01:06,975 | INFO     | [monitor] control thread has ended
[2025-11-28 10:02:06] 2025-11-28 09:01:11,491 | INFO     | all workflow threads have been joined
[2025-11-28 10:02:06] 2025-11-28 09:01:11,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 10:02:06] 2025-11-28 09:01:11,491 | INFO     | traces error code: 0
[2025-11-28 10:02:06] 2025-11-28 09:01:11,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 10:02:06] 2025-11-28 09:01:11,670 [wrapper] ==== pilot stdout END ====
[2025-11-28 10:02:06] 2025-11-28 09:01:11,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 10:02:06] 2025-11-28 09:01:11,679 [wrapper] pilotpid: 2327355
[2025-11-28 10:02:06] 2025-11-28 09:01:11,682 [wrapper] Pilot exit status: 0
[2025-11-28 10:02:06] 2025-11-28 09:01:11,698 [wrapper] pandaids: 6893887090
[2025-11-28 10:02:06] 2025-11-28 09:01:11,880 [wrapper] cleanup supervisor_pilot 3661177 2327356
[2025-11-28 10:02:06] 2025-11-28 09:01:11,884 [wrapper] Test setup, not cleaning
[2025-11-28 10:02:06] 2025-11-28 09:01:11,888 [wrapper] apfmon messages muted
[2025-11-28 10:02:06] 2025-11-28 09:01:11,892 [wrapper] ==== wrapper stdout END ====
[2025-11-28 10:02:06] 2025-11-28 09:01:11,901 [wrapper] ==== wrapper stderr END ====
[2025-11-28 10:02:06]  *** Error codes and diagnostics ***
[2025-11-28 10:02:06]     "exeErrorCode": 0,
[2025-11-28 10:02:06]     "exeErrorDiag": "",
[2025-11-28 10:02:06]     "pilotErrorCode": 0,
[2025-11-28 10:02:06]     "pilotErrorDiag": "",
[2025-11-28 10:02:06]  *** Listing of results directory ***
[2025-11-28 10:02:06] total 1311252
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc      5112 Nov 21 00:03 queuedata.json
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc    576529 Nov 21 00:03 pilot3.tar.gz
[2025-11-28 10:02:06] -rwx------ 1 boinc boinc     36292 Nov 21 00:04 runpilot2-wrapper.sh
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc       100 Nov 27 18:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 10:02:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 18:58 run_atlas
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc       105 Nov 27 18:58 job.xml
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc      6688 Nov 27 18:58 init_data.xml
[2025-11-28 10:02:06] -rw-r--r-- 2 boinc boinc 410065875 Nov 27 18:58 EVNT.47493127._000963.pool.root.1
[2025-11-28 10:02:06] -rw-r--r-- 2 boinc boinc     15847 Nov 27 18:58 start_atlas.sh
[2025-11-28 10:02:06] drwxrwx--x 2 boinc boinc      4096 Nov 27 18:58 shared
[2025-11-28 10:02:06] -rw-r--r-- 2 boinc boinc    590100 Nov 27 18:58 input.tar.gz
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc         0 Nov 27 18:58 boinc_lockfile
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc      2785 Nov 27 18:58 pandaJob.out
[2025-11-28 10:02:06] -rw------- 1 boinc boinc    991231 Nov 27 18:58 agis_schedconf.cvmfs.json
[2025-11-28 10:02:06] drwx------ 5 boinc boinc      4096 Nov 27 18:58 pilot3
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc       532 Nov 28 09:53 boinc_task_state.xml
[2025-11-28 10:02:06] -rw------- 1 boinc boinc 910524001 Nov 28 09:59 HITS.47523449._009624.pool.root.1
[2025-11-28 10:02:06] -rw------- 1 boinc boinc      1040 Nov 28 09:59 memory_monitor_summary.json
[2025-11-28 10:02:06] -rw------- 1 boinc boinc   1516240 Nov 28 09:59 agis_ddmendpoints.agis.ALL.json
[2025-11-28 10:02:06] -rw------- 1 boinc boinc   1636121 Nov 28 09:59 log.47523449._009624.job.log.tgz.1
[2025-11-28 10:02:06] -rw------- 1 boinc boinc      7921 Nov 28 10:00 heartbeat.json
[2025-11-28 10:02:06] -rw------- 1 boinc boinc        95 Nov 28 10:00 pilot_heartbeat.json
[2025-11-28 10:02:06] -rw------- 1 boinc boinc      5093 Nov 28 10:01 pilotlog.txt
[2025-11-28 10:02:06] -rw------- 1 boinc boinc   7473905 Nov 28 10:01 log.47523449._009624.job.log.1
[2025-11-28 10:02:06] -rw------- 1 boinc boinc       353 Nov 28 10:01 output.list
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc       620 Nov 28 10:01 runtime_log
[2025-11-28 10:02:06] -rw------- 1 boinc boinc   9134080 Nov 28 10:01 result.tar.gz
[2025-11-28 10:02:06] -rw------- 1 boinc boinc       670 Nov 28 10:01 vwNMDmpsSg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMeIKDm9FveSm.diag
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc      9223 Nov 28 10:01 runtime_log.err
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc        28 Nov 28 10:02 wrapper_checkpoint.txt
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc      8192 Nov 28 10:02 boinc_mmap_file
[2025-11-28 10:02:06] -rw-r--r-- 1 boinc boinc     21100 Nov 28 10:02 stderr.txt
[2025-11-28 10:02:06] HITS file was successfully produced:
[2025-11-28 10:02:06] -rw------- 1 boinc boinc 910524001 Nov 28 09:59 shared/HITS.pool.root.1
[2025-11-28 10:02:06]  *** Contents of shared directory: ***
[2025-11-28 10:02:06] total 1299164
[2025-11-28 10:02:06] -rw-r--r-- 2 boinc boinc 410065875 Nov 27 18:58 ATLAS.root_0
[2025-11-28 10:02:06] -rw-r--r-- 2 boinc boinc     15847 Nov 27 18:58 start_atlas.sh
[2025-11-28 10:02:06] -rw-r--r-- 2 boinc boinc    590100 Nov 27 18:58 input.tar.gz
[2025-11-28 10:02:06] -rw------- 1 boinc boinc 910524001 Nov 28 09:59 HITS.pool.root.1
[2025-11-28 10:02:06] -rw------- 1 boinc boinc   9134080 Nov 28 10:01 result.tar.gz
10:02:08 (2322995): run_atlas exited; CPU time 216788.665107
10:02:08 (2322995): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN