Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:27:47 (377748): wrapper (7.7.26015): starting
13:27:47 (377748): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 13:27:47] Arguments: --nthreads 8
[2025-11-21 13:27:47] Threads: 8
[2025-11-21 13:27:47] Checking for CVMFS
[2025-11-21 13:27:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 13:27:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 13:27:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 13:27:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 13:27:48] 2.13.3.0 7314 23148 279800 153139 1 597 21022196 40960000 44296 16776704 0 354800976 99.773 191183551 50178 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 13:27:48] CVMFS is ok
[2025-11-21 13:27:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 13:27:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 13:27:49] Further information can be found at the LHC@home message board.
[2025-11-21 13:27:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 13:27:49] Checking for apptainer binary...
[2025-11-21 13:27:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 13:27:49] Running /usr/bin/apptainer --version
[2025-11-21 13:27:49] apptainer version 1.4.4-1.el9
[2025-11-21 13:27:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 13:27:49] c8-16-1.aglt2.org
[2025-11-21 13:27:49] apptainer works
[2025-11-21 13:27:49] Set ATHENA_PROC_NUMBER=8
[2025-11-21 13:27:49] Set ATHENA_CORE_NUMBER=8
[2025-11-21 13:27:49] Starting ATLAS job with PandaID=6893869790
[2025-11-21 13:27:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:55:36]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:55:36] 2025-11-22 02:54:29,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:55:36] 2025-11-22 02:54:30,350 | INFO     | time since job start (30356s) is within the limit (172800.0s)
[2025-11-21 21:55:36] 2025-11-22 02:54:32,101 | INFO     | monitor loop #1676: job 0:6893869790 is in state 'finished'
[2025-11-21 21:55:36] 2025-11-22 02:54:32,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:55:36] 2025-11-22 02:54:32,357 | INFO     | time since job start (30358s) is within the limit (172800.0s)
[2025-11-21 21:55:36] 2025-11-22 02:54:34,364 | INFO     | time since job start (30360s) is within the limit (172800.0s)
[2025-11-21 21:55:36] 2025-11-22 02:54:34,364 | INFO     | 30364s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 21:55:36] 2025-11-22 02:54:34,611 | INFO     | monitor loop #1677: job 0:6893869790 is in state 'finished'
[2025-11-21 21:55:36] 2025-11-22 02:54:34,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:55:36] 2025-11-22 02:54:36,393 | INFO     | time since job start (30362s) is within the limit (172800.0s)
[2025-11-21 21:55:36] 2025-11-22 02:54:37,117 | INFO     | monitor loop #1678: job 0:6893869790 is in state 'finished'
[2025-11-21 21:55:36] 2025-11-22 02:54:37,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:55:36] 2025-11-22 02:54:38,403 | INFO     | time since job start (30364s) is within the limit (172800.0s)
[2025-11-21 21:55:36] 2025-11-22 02:54:39,640 | INFO     | monitor loop #1679: job 0:6893869790 is in state 'finished'
[2025-11-21 21:55:36] 2025-11-22 02:54:39,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,197 | INFO     | PID=394362 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 21:55:36] 2025-11-22 02:54:41,198 | INFO     | .. there are 101 such processes running
[2025-11-21 21:55:36] 2025-11-22 02:54:41,389 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 21:55:36] 2025-11-22 02:54:41,399 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9899921875017
[2025-11-21 21:55:36] 2025-11-22 02:54:41,457 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893869790/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,458 | INFO     | extracted standard info from prmon json
[2025-11-21 21:55:36] 2025-11-22 02:54:41,458 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:55:36] 2025-11-22 02:54:41,458 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:55:36] 2025-11-22 02:54:41,471 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:55:36] 2025-11-22 02:54:41,514 | INFO     | sum of square deviations: 37836367783.03033
[2025-11-21 21:55:36] 2025-11-22 02:54:41,518 | INFO     | sum of deviations: 139064263316.85748
[2025-11-21 21:55:36] 2025-11-22 02:54:41,518 | INFO     | mean x: 1763764914.3044355
[2025-11-21 21:55:36] 2025-11-22 02:54:41,552 | INFO     | mean y: 2818654.29233871
[2025-11-21 21:55:36] 2025-11-22 02:54:41,552 | INFO     | intersect: -6479745155.172311
[2025-11-21 21:55:36] 2025-11-22 02:54:41,552 | INFO     | chi2: 16.26381345926589
[2025-11-21 21:55:36] 2025-11-22 02:54:41,553 | INFO     | sum of square deviations: 36703705444.76152
[2025-11-21 21:55:36] 2025-11-22 02:54:41,560 | INFO     | sum of deviations: 310870478635.1406
[2025-11-21 21:55:36] 2025-11-22 02:54:41,560 | INFO     | mean x: 1763764761.8126273
[2025-11-21 21:55:36] 2025-11-22 02:54:41,560 | INFO     | mean y: 2841783.7515274948
[2025-11-21 21:55:36] 2025-11-22 02:54:41,561 | INFO     | intersect: -14935769701.393274
[2025-11-21 21:55:36] 2025-11-22 02:54:41,561 | INFO     | chi2: 12.453114389089482
[2025-11-21 21:55:36] 2025-11-22 02:54:41,561 | INFO     | current chi2=12.453114389089482 (change=23.430538475620306 %)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,561 | INFO     | right removable region: 490
[2025-11-21 21:55:36] 2025-11-22 02:54:41,561 | INFO     | sum of square deviations: 36703462054.761505
[2025-11-21 21:55:36] 2025-11-22 02:54:41,568 | INFO     | sum of deviations: -43987737728.63945
[2025-11-21 21:55:36] 2025-11-22 02:54:41,569 | INFO     | mean x: 1763765066.8126273
[2025-11-21 21:55:36] 2025-11-22 02:54:41,569 | INFO     | mean y: 2843287.232179226
[2025-11-21 21:55:36] 2025-11-22 02:54:41,569 | INFO     | intersect: 2116650291.5451465
[2025-11-21 21:55:36] 2025-11-22 02:54:41,569 | INFO     | chi2: 12.702385974319991
[2025-11-21 21:55:36] 2025-11-22 02:54:41,569 | INFO     | current chi2=12.702385974319991 (change=21.897862354765678 %)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,569 | INFO     | left removable region: 10
[2025-11-21 21:55:36] 2025-11-22 02:54:41,569 | INFO     | sum of square deviations: 34291540286.94787
[2025-11-21 21:55:36] 2025-11-22 02:54:41,577 | INFO     | sum of deviations: 88377482131.03117
[2025-11-21 21:55:36] 2025-11-22 02:54:41,577 | INFO     | mean x: 1763765036.3229167
[2025-11-21 21:55:36] 2025-11-22 02:54:41,577 | INFO     | mean y: 2883366.60625
[2025-11-21 21:55:36] 2025-11-22 02:54:41,577 | INFO     | intersect: -4542760010.0576
[2025-11-21 21:55:36] 2025-11-22 02:54:41,577 | INFO     | chi2: 6.9703331425745745
[2025-11-21 21:55:36] 2025-11-22 02:54:41,577 | INFO     | current memory leak: 2.58 B/s (using 480 data points, chi2=6.97)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | could have reported an average CPU frequency of 3799 MHz (20 samples)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | ..............................
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . Timing measurements:
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . get job = 0 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . initial setup = 3 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . payload setup = 36 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . stage-in = 0 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . payload execution = 30230 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . stage-out = 4 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | . log creation = 1 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,578 | INFO     | ..............................
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | 
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | job summary report
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | --------------------------------------------------
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | PanDA job id: 6893869790
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | task id: 47523449
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | errors: (none)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | pilot state: finished 
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | transexitcode: 0
[2025-11-21 21:55:36] 2025-11-22 02:54:41,782 | INFO     | exeerrorcode: 0
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | exeerrordiag: 
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | exitcode: 0
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | exitmsg: OK
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | cpuconsumptiontime: 133287 s
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | nevents: 1000
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | neventsw: 0
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | pid: 421630
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | pgrp: 421630
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | corecount: 8
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | event service: False
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | sizes: {0: 2298584, 1: 2298783, 12: 2298783, 21: 2299073, 22: 2299101, 30268: 2337242, 30273: 2346236, 30274: 2346292, 30326: 2346538}
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | --------------------------------------------------
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | 
[2025-11-21 21:55:36] 2025-11-22 02:54:41,783 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 21:55:36] 2025-11-22 02:54:41,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,857 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:55:36] 2025-11-22 02:54:41,858 | INFO     | job 6893869790 has completed (purged errors)
[2025-11-21 21:55:36] 2025-11-22 02:54:41,858 | INFO     | overall cleanup function is called
[2025-11-21 21:55:36] 2025-11-22 02:54:42,887 | INFO     | --- collectZombieJob: --- 10, [421630]
[2025-11-21 21:55:36] 2025-11-22 02:54:42,887 | INFO     | zombie collector waiting for pid 421630
[2025-11-21 21:55:36] 2025-11-22 02:54:42,887 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:55:36] 2025-11-22 02:54:42,887 | INFO     | collected zombie processes
[2025-11-21 21:55:36] 2025-11-22 02:54:42,887 | INFO     | will attempt to kill all subprocesses of pid=421630
[2025-11-21 21:55:36] 2025-11-22 02:54:44,636 | INFO     | process IDs to be killed: [421630] (in reverse order)
[2025-11-21 21:55:36] 2025-11-22 02:54:45,071 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:55:36] 2025-11-22 02:54:45,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:55:36] 2025-11-22 02:54:45,131 | INFO     | did not find any defunct processes belonging to 421630
[2025-11-21 21:55:36] 2025-11-22 02:54:45,168 | INFO     | did not find any defunct processes belonging to 421630
[2025-11-21 21:55:36] 2025-11-22 02:54:45,209 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:55:36] 2025-11-22 02:54:45,209 | INFO     | ready for new job
[2025-11-21 21:55:36] 2025-11-22 02:54:45,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:55:36] 2025-11-22 02:54:45,212 | INFO     | ***************************************
[2025-11-21 21:55:36] 2025-11-22 02:54:45,212 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:55:36] 2025-11-22 02:54:45,212 | INFO     | ***************************************
[2025-11-21 21:55:36] 2025-11-22 02:54:45,212 | INFO     | 
[2025-11-21 21:55:36] 2025-11-22 02:54:45,221 | INFO     | architecture information:
[2025-11-21 21:55:36] 2025-11-22 02:54:45,229 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:55:36] 2025-11-22 02:54:45,300 | INFO     | cat /etc/os-release:
[2025-11-21 21:55:36] NAME="CentOS Linux"
[2025-11-21 21:55:36] VERSION="7 (Core)"
[2025-11-21 21:55:36] ID="centos"
[2025-11-21 21:55:36] ID_LIKE="rhel fedora"
[2025-11-21 21:55:36] VERSION_ID="7"
[2025-11-21 21:55:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:55:36] ANSI_COLOR="0;31"
[2025-11-21 21:55:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:55:36] HOME_URL="https://www.centos.org/"
[2025-11-21 21:55:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:55:36] 
[2025-11-21 21:55:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:55:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:55:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:55:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:55:36] 
[2025-11-21 21:55:36] 2025-11-22 02:54:45,301 | INFO     | ***************************************
[2025-11-21 21:55:36] 2025-11-22 02:54:45,803 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 21:55:36] 2025-11-22 02:54:45,837 | INFO     | sufficient remaining disk space (155317174272 B)
[2025-11-21 21:55:36] 2025-11-22 02:54:45,837 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:55:36] 2025-11-22 02:54:45,837 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:55:36] 2025-11-22 02:54:45,837 | INFO     | update_server=False
[2025-11-21 21:55:36] 2025-11-22 02:54:45,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:55:36] 2025-11-22 02:54:45,838 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:55:36] 2025-11-22 02:54:45,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:55:36] 2025-11-22 02:54:45,838 | INFO     | aborting loop
[2025-11-21 21:55:36] 2025-11-22 02:54:45,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:55:36] 2025-11-22 02:54:46,641 | INFO     | all data control threads have been joined
[2025-11-21 21:55:36] 2025-11-22 02:54:46,807 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:55:36] 2025-11-22 02:54:46,843 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:46,851 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:46,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:46,928 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:46,928 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:47,186 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:47,201 | INFO     | all job control threads have been joined
[2025-11-21 21:55:36] 2025-11-22 02:54:47,272 | INFO     | [job] validate thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:47,272 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:47,387 | INFO     | all payload control threads have been joined
[2025-11-21 21:55:36] 2025-11-22 02:54:47,647 | INFO     | [data] control thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:47,812 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:47,870 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:48,207 | INFO     | [job] control thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:48,273 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:48,393 | INFO     | [payload] control thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:48,435 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:54:49,850 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:55:36] 2025-11-22 02:55:14,649 | INFO     | PID=394362 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 21:55:36] 2025-11-22 02:55:14,649 | INFO     | .. there are 102 such processes running
[2025-11-21 21:55:36] 2025-11-22 02:55:14,649 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:55:36] 2025-11-22 02:55:14,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:55:36] 2025-11-22 02:55:14,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:55:36] 2025-11-22 02:55:27,760 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:55:36] 2025-11-22 02:55:28,766 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735238649664)>', '<ExcThread(monitor, started 139734747707136)>']
[2025-11-21 21:55:36] 2025-11-22 02:55:29,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:55:36] 2025-11-22 02:55:29,755 | INFO     | [monitor] control thread has ended
[2025-11-21 21:55:36] 2025-11-22 02:55:33,794 | INFO     | all workflow threads have been joined
[2025-11-21 21:55:36] 2025-11-22 02:55:33,794 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:55:36] 2025-11-22 02:55:33,794 | INFO     | traces error code: 0
[2025-11-21 21:55:36] 2025-11-22 02:55:33,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:55:36] 2025-11-22 02:55:34,433 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:55:36] 2025-11-22 02:55:34,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:55:36] 2025-11-22 02:55:34,532 [wrapper] pilotpid: 394362
[2025-11-21 21:55:36] 2025-11-22 02:55:34,728 [wrapper] Pilot exit status: 0
[2025-11-21 21:55:36] 2025-11-22 02:55:34,900 [wrapper] pandaids: 6893869790
[2025-11-21 21:55:36] 2025-11-22 02:55:35,496 [wrapper] cleanup supervisor_pilot 3020173 394363
[2025-11-21 21:55:36] 2025-11-22 02:55:35,562 [wrapper] Test setup, not cleaning
[2025-11-21 21:55:36] 2025-11-22 02:55:35,602 [wrapper] apfmon messages muted
[2025-11-21 21:55:36] 2025-11-22 02:55:35,644 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:55:36] 2025-11-22 02:55:35,661 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:55:36]  *** Error codes and diagnostics ***
[2025-11-21 21:55:36]     "exeErrorCode": 0,
[2025-11-21 21:55:36]     "exeErrorDiag": "",
[2025-11-21 21:55:36]     "pilotErrorCode": 0,
[2025-11-21 21:55:36]     "pilotErrorDiag": "",
[2025-11-21 21:55:36]  *** Listing of results directory ***
[2025-11-21 21:55:36] total 1311208
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 09:06 pilot3.tar.gz
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 09:43 queuedata.json
[2025-11-21 21:55:36] -rwx------. 1 boincer umatlas     36292 Nov 20 09:44 runpilot2-wrapper.sh
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas       100 Nov 21 13:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:55:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 13:27 run_atlas
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas       105 Nov 21 13:27 job.xml
[2025-11-21 21:55:36] -rw-r--r--. 2 boincer umatlas 408679721 Nov 21 13:27 EVNT.47493127._000642.pool.root.1
[2025-11-21 21:55:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 13:27 start_atlas.sh
[2025-11-21 21:55:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 13:27 shared
[2025-11-21 21:55:36] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 13:27 input.tar.gz
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas         0 Nov 21 13:27 boinc_lockfile
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 13:27 pandaJob.out
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas        57 Nov 21 13:27 setup.sh.local
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas    989798 Nov 21 13:28 agis_schedconf.cvmfs.json
[2025-11-21 21:55:36] drwx------. 5 boincer umatlas      4096 Nov 21 13:28 pilot3
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas       532 Nov 21 21:36 boinc_task_state.xml
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas      7174 Nov 21 21:48 init_data.xml
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas 919315542 Nov 21 21:53 HITS.47523449._006419.pool.root.1
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas      1056 Nov 21 21:53 memory_monitor_summary.json
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas   1526164 Nov 21 21:53 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas   1732655 Nov 21 21:53 log.47523449._006419.job.log.tgz.1
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas        95 Nov 21 21:54 pilot_heartbeat.json
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas      8587 Nov 21 21:54 heartbeat.json
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 21:55 boinc_mmap_file
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas        29 Nov 21 21:55 wrapper_checkpoint.txt
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas      4825 Nov 21 21:55 pilotlog.txt
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas   3639098 Nov 21 21:55 log.47523449._006419.job.log.1
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas       353 Nov 21 21:55 output.list
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas       620 Nov 21 21:55 runtime_log
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas   5396480 Nov 21 21:55 result.tar.gz
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas       660 Nov 21 21:55 YiAODmR4Kg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG8HKDmpwb3Uo.diag
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas      9338 Nov 21 21:55 runtime_log.err
[2025-11-21 21:55:36] -rw-r--r--. 1 boincer umatlas     21870 Nov 21 21:55 stderr.txt
[2025-11-21 21:55:36] HITS file was successfully produced:
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas 919315542 Nov 21 21:53 shared/HITS.pool.root.1
[2025-11-21 21:55:36]  *** Contents of shared directory: ***
[2025-11-21 21:55:36] total 1302752
[2025-11-21 21:55:36] -rw-r--r--. 2 boincer umatlas 408679721 Nov 21 13:27 ATLAS.root_0
[2025-11-21 21:55:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 13:27 start_atlas.sh
[2025-11-21 21:55:36] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 13:27 input.tar.gz
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas 919315542 Nov 21 21:53 HITS.pool.root.1
[2025-11-21 21:55:36] -rw-------. 1 boincer umatlas   5396480 Nov 21 21:55 result.tar.gz
21:55:37 (377748): run_atlas exited; CPU time 133930.583131
21:55:37 (377748): called boinc_finish(0)

</stderr_txt>
]]>

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