Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:35:48 (1751712): wrapper (7.7.26015): starting
14:35:48 (1751712): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 14:35:48] Arguments: --nthreads 4
[2025-11-27 14:35:48] Threads: 4
[2025-11-27 14:35:48] Checking for CVMFS
[2025-11-27 14:35:48] No cvmfs_config command found, will try listing directly
[2025-11-27 14:35:48] CVMFS is ok
[2025-11-27 14:35:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 14:35:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 14:35:48] Further information can be found at the LHC@home message board.
[2025-11-27 14:35:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:35:48] Checking for apptainer binary...
[2025-11-27 14:35:48] which: no apptainer in ((null))
[2025-11-27 14:35:48] apptainer is not installed, using version from CVMFS
[2025-11-27 14:35:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:35:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-27 14:35:49] apptainer works
[2025-11-27 14:35:49] Set ATHENA_PROC_NUMBER=4
[2025-11-27 14:35:49] Set ATHENA_CORE_NUMBER=4
[2025-11-27 14:35:49] Starting ATLAS job with PandaID=6893864199
[2025-11-27 14:35:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:14:01 (2640612): wrapper (7.7.26015): starting
02:14:01 (2640612): wrapper: running run_atlas (--nthreads 4)
[2025-11-28 02:14:01] Arguments: --nthreads 4
[2025-11-28 02:14:01] Threads: 4
[2025-11-28 02:14:01] This job has been restarted, cleaning up previous attempt
[2025-11-28 02:14:01] Checking for CVMFS
[2025-11-28 02:14:01] No cvmfs_config command found, will try listing directly
[2025-11-28 02:14:01] CVMFS is ok
[2025-11-28 02:14:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 02:14:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 02:14:01] Further information can be found at the LHC@home message board.
[2025-11-28 02:14:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 02:14:01] Checking for apptainer binary...
[2025-11-28 02:14:01] which: no apptainer in ((null))
[2025-11-28 02:14:01] apptainer is not installed, using version from CVMFS
[2025-11-28 02:14:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 02:14:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-11-28 02:14:02] apptainer works
[2025-11-28 02:14:02] Set ATHENA_PROC_NUMBER=4
[2025-11-28 02:14:02] Set ATHENA_CORE_NUMBER=4
[2025-11-28 02:14:02] Starting ATLAS job with PandaID=6893864199
[2025-11-28 02:14:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 18:01:26]  *** The last 200 lines of the pilot log: ***
[2025-11-28 18:01:26] 2025-11-28 16:55:07,661 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2669.9496874999995
[2025-11-28 18:01:26] 2025-11-28 16:55:07,686 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6893864199/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,686 | INFO     | extracted standard info from prmon json
[2025-11-28 18:01:26] 2025-11-28 16:55:07,686 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 18:01:26] 2025-11-28 16:55:07,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 18:01:26] 2025-11-28 16:55:07,702 | INFO     | fitting pss+swap vs Time
[2025-11-28 18:01:26] 2025-11-28 16:55:07,704 | INFO     | sum of square deviations: 245416136350.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,725 | INFO     | sum of deviations: 669376377396.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,725 | INFO     | mean x: 1764320676.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,725 | INFO     | mean y: 2267712.1135135135
[2025-11-28 18:01:26] 2025-11-28 16:55:07,725 | INFO     | intersect: -4809944721.1450205
[2025-11-28 18:01:26] 2025-11-28 16:55:07,726 | INFO     | chi2: 4.399549033777718
[2025-11-28 18:01:26] 2025-11-28 16:55:07,727 | INFO     | sum of square deviations: 241457885390.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,747 | INFO     | sum of deviations: 867574438610.5002
[2025-11-28 18:01:26] 2025-11-28 16:55:07,748 | INFO     | mean x: 1764320523.5
[2025-11-28 18:01:26] 2025-11-28 16:55:07,748 | INFO     | mean y: 2275344.575
[2025-11-28 18:01:26] 2025-11-28 16:55:07,748 | INFO     | intersect: -6337047081.0818
[2025-11-28 18:01:26] 2025-11-28 16:55:07,749 | INFO     | chi2: 2.156133767511116
[2025-11-28 18:01:26] 2025-11-28 16:55:07,749 | INFO     | current chi2=2.156133767511116 (change=50.99193687904576 %)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,750 | INFO     | sum of square deviations: 237542425930.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,769 | INFO     | sum of deviations: 901326699024.9999
[2025-11-28 18:01:26] 2025-11-28 16:55:07,769 | INFO     | mean x: 1764320371.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,769 | INFO     | mean y: 2276655.0841530054
[2025-11-28 18:01:26] 2025-11-28 16:55:07,770 | INFO     | intersect: -6692228757.117911
[2025-11-28 18:01:26] 2025-11-28 16:55:07,771 | INFO     | chi2: 1.9962144367062482
[2025-11-28 18:01:26] 2025-11-28 16:55:07,771 | INFO     | current chi2=1.9962144367062482 (change=7.416948485040755 %)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,771 | INFO     | right removable region: 914
[2025-11-28 18:01:26] 2025-11-28 16:55:07,772 | INFO     | sum of square deviations: 241457885390.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,792 | INFO     | sum of deviations: 497422244159.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,792 | INFO     | mean x: 1764320828.5
[2025-11-28 18:01:26] 2025-11-28 16:55:07,792 | INFO     | mean y: 2274325.156521739
[2025-11-28 18:01:26] 2025-11-28 16:55:07,792 | INFO     | intersect: -3632365415.481589
[2025-11-28 18:01:26] 2025-11-28 16:55:07,793 | INFO     | chi2: 2.5018960895934637
[2025-11-28 18:01:26] 2025-11-28 16:55:07,793 | INFO     | current chi2=2.5018960895934637 (change=43.13289679498844 %)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,794 | INFO     | sum of square deviations: 237542425930.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,815 | INFO     | sum of deviations: 470757878592.00006
[2025-11-28 18:01:26] 2025-11-28 16:55:07,815 | INFO     | mean x: 1764320981.0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,815 | INFO     | mean y: 2275363.062295082
[2025-11-28 18:01:26] 2025-11-28 16:55:07,816 | INFO     | intersect: -3494228467.4394264
[2025-11-28 18:01:26] 2025-11-28 16:55:07,816 | INFO     | chi2: 2.4853820421006323
[2025-11-28 18:01:26] 2025-11-28 16:55:07,817 | INFO     | current chi2=2.4853820421006323 (change=0.6600612855794004 %)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,817 | INFO     | left removable region: 20
[2025-11-28 18:01:26] 2025-11-28 16:55:07,818 | INFO     | sum of square deviations: 221559530907.5
[2025-11-28 18:01:26] 2025-11-28 16:55:07,836 | INFO     | sum of deviations: 665198796788.0001
[2025-11-28 18:01:26] 2025-11-28 16:55:07,837 | INFO     | mean x: 1764320950.5
[2025-11-28 18:01:26] 2025-11-28 16:55:07,837 | INFO     | mean y: 2285875.36689038
[2025-11-28 18:01:26] 2025-11-28 16:55:07,837 | INFO     | intersect: -5294819460.672312
[2025-11-28 18:01:26] 2025-11-28 16:55:07,838 | INFO     | chi2: 0.06623465437924714
[2025-11-28 18:01:26] 2025-11-28 16:55:07,838 | INFO     | current memory leak: 3.00 B/s (using 894 data points, chi2=0.07)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,839 | INFO     | could have reported an average CPU frequency of 2664 MHz (35 samples)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,839 | INFO     | ..............................
[2025-11-28 18:01:26] 2025-11-28 16:55:07,839 | INFO     | . Timing measurements:
[2025-11-28 18:01:26] 2025-11-28 16:55:07,839 | INFO     | . get job = 0 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,839 | INFO     | . initial setup = 1 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,840 | INFO     | . payload setup = 9 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,840 | INFO     | . stage-in = 0 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,840 | INFO     | . payload execution = 56403 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,840 | INFO     | . stage-out = 2 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,840 | INFO     | . log creation = 0 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,840 | INFO     | ..............................
[2025-11-28 18:01:26] 2025-11-28 16:55:07,928 | INFO     | time since job start (56450s) is within the limit (172800.0s)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | 
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | job summary report
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | --------------------------------------------------
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | PanDA job id: 6893864199
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | task id: 47523449
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | errors: (none)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | pilot state: finished 
[2025-11-28 18:01:26] 2025-11-28 16:55:07,940 | INFO     | transexitcode: 0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | exeerrorcode: 0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | exeerrordiag: 
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | exitcode: 0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | exitmsg: OK
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | cpuconsumptiontime: 223422 s
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | nevents: 1000
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | neventsw: 0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | pid: 2652860
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | pgrp: 2652860
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | corecount: 4
[2025-11-28 18:01:26] 2025-11-28 16:55:07,941 | INFO     | event service: False
[2025-11-28 18:01:26] 2025-11-28 16:55:07,942 | INFO     | sizes: {0: 2284099, 1: 2284354, 8: 2284616, 12: 2284644, 56416: 2337741, 56417: 2337740, 56419: 2346942, 56422: 2346998, 56431: 2347244}
[2025-11-28 18:01:26] 2025-11-28 16:55:07,942 | INFO     | --------------------------------------------------
[2025-11-28 18:01:26] 2025-11-28 16:55:07,942 | INFO     | 
[2025-11-28 18:01:26] 2025-11-28 16:55:07,942 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-11-28 18:01:26] 2025-11-28 16:55:07,980 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 18:01:26] 2025-11-28 16:55:07,983 | INFO     | job 6893864199 has completed (purged errors)
[2025-11-28 18:01:26] 2025-11-28 16:55:07,983 | INFO     | overall cleanup function is called
[2025-11-28 18:01:26] 2025-11-28 16:55:09,000 | INFO     | --- collectZombieJob: --- 10, [2652860]
[2025-11-28 18:01:26] 2025-11-28 16:55:09,001 | INFO     | zombie collector waiting for pid 2652860
[2025-11-28 18:01:26] 2025-11-28 16:55:09,001 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 18:01:26] 2025-11-28 16:55:09,001 | INFO     | collected zombie processes
[2025-11-28 18:01:26] 2025-11-28 16:55:09,001 | INFO     | will attempt to kill all subprocesses of pid=2652860
[2025-11-28 18:01:26] 2025-11-28 16:55:09,804 | INFO     | process IDs to be killed: [2652860] (in reverse order)
[2025-11-28 18:01:26] 2025-11-28 16:55:10,052 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 18:01:26] 2025-11-28 16:55:10,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 18:01:26] 2025-11-28 16:55:10,084 | INFO     | did not find any defunct processes belonging to 2652860
[2025-11-28 18:01:26] 2025-11-28 16:55:10,116 | INFO     | did not find any defunct processes belonging to 2652860
[2025-11-28 18:01:26] 2025-11-28 16:55:10,118 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 18:01:26] 2025-11-28 16:55:10,118 | INFO     | ready for new job
[2025-11-28 18:01:26] 2025-11-28 16:55:10,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 18:01:26] 2025-11-28 16:55:10,124 | INFO     | ***************************************
[2025-11-28 18:01:26] 2025-11-28 16:55:10,124 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 18:01:26] 2025-11-28 16:55:10,124 | INFO     | ***************************************
[2025-11-28 18:01:26] 2025-11-28 16:55:10,125 | INFO     | 
[2025-11-28 18:01:26] 2025-11-28 16:55:10,133 | INFO     | architecture information:
[2025-11-28 18:01:26] 2025-11-28 16:55:10,134 | INFO     | executing command: cat /etc/os-release
[2025-11-28 18:01:26] 2025-11-28 16:55:10,161 | INFO     | cat /etc/os-release:
[2025-11-28 18:01:26] NAME="CentOS Linux"
[2025-11-28 18:01:26] VERSION="7 (Core)"
[2025-11-28 18:01:26] ID="centos"
[2025-11-28 18:01:26] ID_LIKE="rhel fedora"
[2025-11-28 18:01:26] VERSION_ID="7"
[2025-11-28 18:01:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 18:01:26] ANSI_COLOR="0;31"
[2025-11-28 18:01:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 18:01:26] HOME_URL="https://www.centos.org/"
[2025-11-28 18:01:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 18:01:26] 
[2025-11-28 18:01:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 18:01:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 18:01:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 18:01:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 18:01:26] 
[2025-11-28 18:01:26] 2025-11-28 16:55:10,161 | INFO     | ***************************************
[2025-11-28 18:01:26] 2025-11-28 16:55:10,665 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-11-28 18:01:26] 2025-11-28 16:55:10,689 | INFO     | sufficient remaining disk space (3290285735936 B)
[2025-11-28 18:01:26] 2025-11-28 16:55:10,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 18:01:26] 2025-11-28 16:55:10,690 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 18:01:26] 2025-11-28 16:55:10,690 | INFO     | update_server=False
[2025-11-28 18:01:26] 2025-11-28 16:55:10,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 18:01:26] 2025-11-28 16:55:10,862 | INFO     | all payload control threads have been joined
[2025-11-28 18:01:26] 2025-11-28 16:55:10,865 | INFO     | all data control threads have been joined
[2025-11-28 18:01:26] 2025-11-28 16:55:10,877 | INFO     | all job control threads have been joined
[2025-11-28 18:01:26] 2025-11-28 16:55:11,021 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 18:01:26] 2025-11-28 16:55:11,021 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 18:01:26] 2025-11-28 16:55:11,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 18:01:26] 2025-11-28 16:55:11,021 | INFO     | will abort loop
[2025-11-28 18:01:26] 2025-11-28 16:55:11,695 | INFO     | [job] retrieve thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:11,731 | INFO     | [data] copytool_in thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:11,763 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 18:01:26] 2025-11-28 16:55:11,867 | INFO     | [payload] control thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:11,870 | INFO     | [data] control thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:11,882 | INFO     | [job] control thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,015 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,027 | INFO     | [job] job monitor thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,289 | INFO     | [payload] validate_post thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,422 | INFO     | [payload] failed_post thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,445 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,884 | INFO     | [job] validate thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,905 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:12,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 18:01:26] 2025-11-28 16:55:13,769 | INFO     | [data] copytool_out thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:13,909 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 18:01:26] 2025-11-28 16:55:13,956 | INFO     | [job] queue monitor thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:17,916 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:21,079 | INFO     | job.realtimelogging is not enabled
[2025-11-28 18:01:26] 2025-11-28 16:55:22,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 18:01:26] 2025-11-28 16:55:41,985 | INFO     | PID=2645014 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 18:01:26] 2025-11-28 16:55:41,985 | INFO     | .. there are 6 such processes running
[2025-11-28 18:01:26] 2025-11-28 16:55:41,985 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 18:01:26] 2025-11-28 16:55:41,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 18:01:26] 2025-11-28 16:55:41,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 18:01:26] 2025-11-28 16:55:49,638 | INFO     | [monitor] cgroup control has ended
[2025-11-28 18:01:26] 2025-11-28 16:55:50,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23182041118528)>', '<ExcThread(monitor, started 23181794424576)>']
[2025-11-28 18:01:26] 2025-11-28 16:55:51,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 18:01:26] 2025-11-28 16:55:51,031 | INFO     | [monitor] control thread has ended
[2025-11-28 18:01:26] 2025-11-28 16:55:55,750 | INFO     | all workflow threads have been joined
[2025-11-28 18:01:26] 2025-11-28 16:55:55,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 18:01:26] 2025-11-28 16:55:55,751 | INFO     | traces error code: 0
[2025-11-28 18:01:26] 2025-11-28 16:55:55,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 18:01:26] 2025-11-28 16:55:55,901 [wrapper] ==== pilot stdout END ====
[2025-11-28 18:01:26] 2025-11-28 16:55:55,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 18:01:26] 2025-11-28 16:55:55,909 [wrapper] pilotpid: 2645014
[2025-11-28 18:01:26] 2025-11-28 16:55:55,914 [wrapper] Pilot exit status: 0
[2025-11-28 18:01:26] 2025-11-28 16:55:55,929 [wrapper] pandaids: 6893864199 6893864199
[2025-11-28 18:01:26] 2025-11-28 16:55:56,103 [wrapper] cleanup supervisor_pilot 3855663 2645015
[2025-11-28 18:01:26] 2025-11-28 16:55:56,107 [wrapper] Test setup, not cleaning
[2025-11-28 18:01:26] 2025-11-28 16:55:56,110 [wrapper] apfmon messages muted
[2025-11-28 18:01:26] 2025-11-28 16:55:56,114 [wrapper] ==== wrapper stdout END ====
[2025-11-28 18:01:26] 2025-11-28 16:55:56,118 [wrapper] ==== wrapper stderr END ====
[2025-11-28 18:01:26]  *** Error codes and diagnostics ***
[2025-11-28 18:01:26]     "exeErrorCode": 0,
[2025-11-28 18:01:26]     "exeErrorDiag": "",
[2025-11-28 18:01:26]     "pilotErrorCode": 0,
[2025-11-28 18:01:26]     "pilotErrorDiag": "",
[2025-11-28 18:01:26]  *** Listing of results directory ***
[2025-11-28 18:01:26] total 1715456
[2025-11-28 18:01:26] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc      5112 Nov 20 15:20 queuedata.json
[2025-11-28 18:01:26] -rwx------ 1 boinc boinc     36292 Nov 20 15:21 runpilot2-wrapper.sh
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc       100 Nov 27 14:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 18:01:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 14:35 run_atlas
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc       105 Nov 27 14:35 job.xml
[2025-11-28 18:01:26] -rw-r--r-- 3 boinc boinc 409873606 Nov 27 14:35 EVNT.47493127._000602.pool.root.1
[2025-11-28 18:01:26] -rw-r--r-- 3 boinc boinc 409873606 Nov 27 14:35 ATLAS.root_0
[2025-11-28 18:01:26] -rw-r--r-- 2 boinc boinc    590101 Nov 27 14:35 input.tar.gz
[2025-11-28 18:01:26] -rw-r--r-- 2 boinc boinc     15847 Nov 27 14:35 start_atlas.sh
[2025-11-28 18:01:26] drwxrwx--x 2 boinc boinc      4096 Nov 27 14:35 shared
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc         0 Nov 27 14:35 boinc_lockfile
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc      2785 Nov 28 02:14 pandaJob.out
[2025-11-28 18:01:26] -rw------- 1 boinc boinc    991826 Nov 28 02:14 agis_schedconf.cvmfs.json
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc      6696 Nov 28 05:37 init_data.xml
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc       532 Nov 28 17:46 boinc_task_state.xml
[2025-11-28 18:01:26] -rw------- 1 boinc boinc 914074245 Nov 28 17:54 HITS.47523449._006020.pool.root.1
[2025-11-28 18:01:26] -rw------- 1 boinc boinc        97 Nov 28 17:54 pilot_heartbeat.json
[2025-11-28 18:01:26] -rw------- 1 boinc boinc      1042 Nov 28 17:54 memory_monitor_summary.json
[2025-11-28 18:01:26] -rw------- 1 boinc boinc   1516240 Nov 28 17:54 agis_ddmendpoints.agis.ALL.json
[2025-11-28 18:01:26] -rw------- 1 boinc boinc   1666967 Nov 28 17:54 log.47523449._006020.job.log.tgz.1
[2025-11-28 18:01:26] -rw------- 1 boinc boinc      8606 Nov 28 17:55 heartbeat.json
[2025-11-28 18:01:26] -rw------- 1 boinc boinc      5093 Nov 28 17:55 pilotlog.txt
[2025-11-28 18:01:26] -rw------- 1 boinc boinc   7777038 Nov 28 17:55 log.47523449._006020.job.log.1
[2025-11-28 18:01:26] -rw------- 1 boinc boinc       353 Nov 28 17:55 output.list
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc       620 Nov 28 17:55 runtime_log
[2025-11-28 18:01:26] -rw------- 1 boinc boinc   9461760 Nov 28 17:55 result.tar.gz
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc      9300 Nov 28 17:55 runtime_log.err
[2025-11-28 18:01:26] -rw------- 1 boinc boinc       795 Nov 28 17:55 bKHODmNiKg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDnGKDmfTlrQo.diag
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc        28 Nov 28 18:01 wrapper_checkpoint.txt
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc      8192 Nov 28 18:01 boinc_mmap_file
[2025-11-28 18:01:26] -rw-r--r-- 1 boinc boinc     22963 Nov 28 18:01 stderr.txt
[2025-11-28 18:01:26] HITS file was successfully produced:
[2025-11-28 18:01:26] -rw------- 1 boinc boinc 914074245 Nov 28 17:54 shared/HITS.pool.root.1
[2025-11-28 18:01:26]  *** Contents of shared directory: ***
[2025-11-28 18:01:26] total 1302764
[2025-11-28 18:01:26] -rw-r--r-- 3 boinc boinc 409873606 Nov 27 14:35 ATLAS.root_0
[2025-11-28 18:01:26] -rw-r--r-- 2 boinc boinc    590101 Nov 27 14:35 input.tar.gz
[2025-11-28 18:01:26] -rw-r--r-- 2 boinc boinc     15847 Nov 27 14:35 start_atlas.sh
[2025-11-28 18:01:26] -rw------- 1 boinc boinc 914074245 Nov 28 17:54 HITS.pool.root.1
[2025-11-28 18:01:26] -rw------- 1 boinc boinc   9461760 Nov 28 17:55 result.tar.gz
18:01:27 (2640612): run_atlas exited; CPU time 226307.078450
18:01:27 (2640612): called boinc_finish(0)

</stderr_txt>
]]>

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