Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:26:39 (3135218): wrapper (7.7.26015): starting
19:26:39 (3135218): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 19:26:39] Arguments: --nthreads 3
[2025-11-21 19:26:39] Threads: 3
[2025-11-21 19:26:39] Checking for CVMFS
[2025-11-21 19:26:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 19:26:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 19:26:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 19:26:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 19:26:40] 2.9.2.0 16720 1773 82732 153128 1 252 34534766 36864000 0 130560 0 21956863 100.000 42805 1750 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 19:26:40] CVMFS is ok
[2025-11-21 19:26:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 19:26:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 19:26:40] Further information can be found at the LHC@home message board.
[2025-11-21 19:26:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 19:26:40] Checking for apptainer binary...
[2025-11-21 19:26:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 19:26:40] Running /usr/bin/apptainer --version
[2025-11-21 19:26:40] apptainer version 1.4.1-1.1
[2025-11-21 19:26:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 19:26:40] thA335
[2025-11-21 19:26:40] apptainer works
[2025-11-21 19:26:40] Set ATHENA_PROC_NUMBER=3
[2025-11-21 19:26:40] Set ATHENA_CORE_NUMBER=3
[2025-11-21 19:26:40] Starting ATLAS job with PandaID=6894258944
[2025-11-21 19:26:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:30:58]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:30:58] 2025-11-21 18:30:06,408 | INFO     | update_server=False
[2025-11-21 19:30:58] 2025-11-21 18:30:06,408 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:30:58] 2025-11-21 18:30:06,408 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:30:58] 2025-11-21 18:30:06,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:30:58] 2025-11-21 18:30:06,908 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 19:30:58] 2025-11-21 18:30:06,908 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 19:30:58] 2025-11-21 18:30:06,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:30:58] 2025-11-21 18:30:06,977 | INFO     | will abort loop
[2025-11-21 19:30:58] 2025-11-21 18:30:07,223 | INFO     | all data control threads have been joined
[2025-11-21 19:30:58] 2025-11-21 18:30:07,414 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:07,414 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:07,547 | INFO     | all payload control threads have been joined
[2025-11-21 19:30:58] 2025-11-21 18:30:07,853 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:07,983 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:07,994 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,110 | INFO     | all job control threads have been joined
[2025-11-21 19:30:58] 2025-11-21 18:30:08,133 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,229 | INFO     | [data] control thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,390 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,497 | INFO     | [job] validate thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,553 | INFO     | [payload] control thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,592 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,642 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,662 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:08,788 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:09,116 | INFO     | [job] control thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:09,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:30:58] 2025-11-21 18:30:13,180 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:30:58] 2025-11-21 18:30:36,862 | INFO     | PID=3138947 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:30:58] 2025-11-21 18:30:36,862 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:30:58] 2025-11-21 18:30:36,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:30:58] 2025-11-21 18:30:36,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:30:58] 2025-11-21 18:30:51,759 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:30:58] 2025-11-21 18:30:53,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473827338048)>', '<ExcThread(monitor, started 140473205253888)>']
[2025-11-21 19:30:58] 2025-11-21 18:30:53,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:30:58] 2025-11-21 18:30:53,953 | INFO     | [monitor] control thread has ended
[2025-11-21 19:30:58] 2025-11-21 18:30:58,078 | INFO     | all workflow threads have been joined
[2025-11-21 19:30:58] 2025-11-21 18:30:58,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:30:58] 2025-11-21 18:30:58,079 | INFO     | traces error code: 0
[2025-11-21 19:30:58] 2025-11-21 18:30:58,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:30:58] 2025-11-21 18:30:58,124 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:30:58] 2025-11-21 18:30:58,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:30:58] 2025-11-21 18:30:58,130 [wrapper] pilotpid: 3138947
[2025-11-21 19:30:58] 2025-11-21 18:30:58,133 [wrapper] Pilot exit status: 0
[2025-11-21 19:30:58] 2025-11-21 18:30:58,139 [wrapper] pandaids: 6894258944
[2025-11-21 19:30:58] 2025-11-21 18:30:58,156 [wrapper] cleanup supervisor_pilot 3138953 3138948
[2025-11-21 19:30:58] 2025-11-21 18:30:58,159 [wrapper] Test setup, not cleaning
[2025-11-21 19:30:58] 2025-11-21 18:30:58,162 [wrapper] apfmon messages muted
[2025-11-21 19:30:58] 2025-11-21 18:30:58,165 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:30:58] 2025-11-21 18:30:58,168 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:30:58]  *** Error codes and diagnostics ***
[2025-11-21 19:30:58]     "exeErrorCode": 65,
[2025-11-21 19:30:58]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 19:30:58]     "pilotErrorCode": 1305,
[2025-11-21 19:30:58]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 19:30:58]  *** Listing of results directory ***
[2025-11-21 19:30:58] total 403072
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc      5112 Nov 21 05:11 queuedata.json
[2025-11-21 19:30:58] -rwx------ 1 boinc boinc     36292 Nov 21 05:12 runpilot2-wrapper.sh
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc    576529 Nov 21 05:12 pilot3.tar.gz
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc       100 Nov 21 19:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:30:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 19:26 run_atlas
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc       105 Nov 21 19:26 job.xml
[2025-11-21 19:30:58] -rw-r--r-- 2 boinc boinc 408541560 Nov 21 19:26 EVNT.47493127._002180.pool.root.1
[2025-11-21 19:30:58] -rw-r--r-- 2 boinc boinc    590100 Nov 21 19:26 input.tar.gz
[2025-11-21 19:30:58] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:26 start_atlas.sh
[2025-11-21 19:30:58] drwxrwx--x 2 boinc boinc      4096 Nov 21 19:26 shared
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc         0 Nov 21 19:26 boinc_setup_complete
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc      6194 Nov 21 19:26 init_data.xml
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc         0 Nov 21 19:26 boinc_lockfile
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc      2786 Nov 21 19:26 pandaJob.out
[2025-11-21 19:30:58] -rw------- 1 boinc boinc    989817 Nov 21 19:26 agis_schedconf.cvmfs.json
[2025-11-21 19:30:58] -rw------- 1 boinc boinc   1526164 Nov 21 19:26 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:30:58] drwx------ 5 boinc boinc      4096 Nov 21 19:26 pilot3
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc       522 Nov 21 19:27 boinc_task_state.xml
[2025-11-21 19:30:58] -rw------- 1 boinc boinc       956 Nov 21 19:27 memory_monitor_summary.json
[2025-11-21 19:30:58] -rw------- 1 boinc boinc     55909 Nov 21 19:28 log.47533967._001513.job.log.tgz.1
[2025-11-21 19:30:58] -rw------- 1 boinc boinc        95 Nov 21 19:29 pilot_heartbeat.json
[2025-11-21 19:30:58] -rw------- 1 boinc boinc      8403 Nov 21 19:30 heartbeat.json
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc      8192 Nov 21 19:30 boinc_mmap_file
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc        22 Nov 21 19:30 wrapper_checkpoint.txt
[2025-11-21 19:30:58] -rw------- 1 boinc boinc      4938 Nov 21 19:30 pilotlog.txt
[2025-11-21 19:30:58] -rw------- 1 boinc boinc     93653 Nov 21 19:30 log.47533967._001513.job.log.1
[2025-11-21 19:30:58] -rw------- 1 boinc boinc       186 Nov 21 19:30 output.list
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc       620 Nov 21 19:30 runtime_log
[2025-11-21 19:30:58] -rw------- 1 boinc boinc    174080 Nov 21 19:30 result.tar.gz
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc      8744 Nov 21 19:30 runtime_log.err
[2025-11-21 19:30:58] -rw------- 1 boinc boinc       648 Nov 21 19:30 7QTMDmNgXg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6zIKDmwYE7Em.diag
[2025-11-21 19:30:58] -rw-r--r-- 1 boinc boinc      8021 Nov 21 19:30 stderr.txt
[2025-11-21 19:30:58] No HITS result produced
[2025-11-21 19:30:58]  *** Contents of shared directory: ***
[2025-11-21 19:30:58] total 399740
[2025-11-21 19:30:58] -rw-r--r-- 2 boinc boinc 408541560 Nov 21 19:26 ATLAS.root_0
[2025-11-21 19:30:58] -rw-r--r-- 2 boinc boinc    590100 Nov 21 19:26 input.tar.gz
[2025-11-21 19:30:58] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:26 start_atlas.sh
[2025-11-21 19:30:58] -rw------- 1 boinc boinc    174080 Nov 21 19:30 result.tar.gz
19:30:59 (3135218): run_atlas exited; CPU time 31.589907
19:30:59 (3135218): called boinc_finish(0)

</stderr_txt>
]]>

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