Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:00:56 (32327): wrapper (7.7.26015): starting
14:00:56 (32327): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:00:56] Arguments: --nthreads 8
[2025-11-24 14:00:56] Threads: 8
[2025-11-24 14:00:56] Checking for CVMFS
[2025-11-24 14:00:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:00:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:00:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:00:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:00:58] 2.11.2.0 6805 282357 143980 153246 3 87 15309217 25165824 1027 130560 40 120693976 99.856 81052929 3004 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 14:00:58] CVMFS is ok
[2025-11-24 14:00:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:00:58] Checking for apptainer binary...
[2025-11-24 14:00:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:00:58] Running /usr/bin/apptainer --version
[2025-11-24 14:00:59] apptainer version 1.3.2-1.el7
[2025-11-24 14:00:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:01:16] cg-vwn251.simple-grid.lan
[2025-11-24 14:01:16] apptainer works
[2025-11-24 14:01:16] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:01:16] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:01:16] Starting ATLAS job with PandaID=6893884377
[2025-11-24 14:01:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:41:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:41:28] 2025-11-25 13:40:39,746 | INFO     | time since job start (88515s) is within the limit (172800.0s)
[2025-11-25 14:41:28] 2025-11-25 13:40:41,700 | INFO     | monitor loop #5968: job 0:6893884377 is in state 'finished'
[2025-11-25 14:41:28] 2025-11-25 13:40:41,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:41:28] 2025-11-25 13:40:41,754 | INFO     | time since job start (88517s) is within the limit (172800.0s)
[2025-11-25 14:41:28] 2025-11-25 13:40:43,761 | INFO     | time since job start (88519s) is within the limit (172800.0s)
[2025-11-25 14:41:28] 2025-11-25 13:40:44,206 | INFO     | monitor loop #5969: job 0:6893884377 is in state 'finished'
[2025-11-25 14:41:28] 2025-11-25 13:40:44,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:41:28] 2025-11-25 13:40:45,768 | INFO     | time since job start (88521s) is within the limit (172800.0s)
[2025-11-25 14:41:28] 2025-11-25 13:40:46,712 | INFO     | monitor loop #5970: job 0:6893884377 is in state 'finished'
[2025-11-25 14:41:28] 2025-11-25 13:40:46,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:41:28] 2025-11-25 13:40:47,775 | INFO     | time since job start (88523s) is within the limit (172800.0s)
[2025-11-25 14:41:28] 2025-11-25 13:40:48,974 | INFO     | PID=3673 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 14:41:28] 2025-11-25 13:40:48,974 | INFO     | .. there are 9 such processes running
[2025-11-25 14:41:28] 2025-11-25 13:40:49,184 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 14:41:28] 2025-11-25 13:40:49,185 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 14:41:28] 2025-11-25 13:40:49,187 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893884377/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 14:41:28] 2025-11-25 13:40:49,188 | INFO     | extracted standard info from prmon json
[2025-11-25 14:41:28] 2025-11-25 13:40:49,189 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 14:41:28] 2025-11-25 13:40:49,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 14:41:28] 2025-11-25 13:40:49,228 | INFO     | fitting pss+swap vs Time
[2025-11-25 14:41:28] 2025-11-25 13:40:49,231 | INFO     | sum of square deviations: 927837992354.6289
[2025-11-25 14:41:28] 2025-11-25 13:40:49,261 | INFO     | monitor loop #5971: job 0:6893884377 is in state 'finished'
[2025-11-25 14:41:28] 2025-11-25 13:40:49,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 14:41:28] 2025-11-25 13:40:49,307 | INFO     | sum of deviations: 4186052740450.096
[2025-11-25 14:41:28] 2025-11-25 13:40:49,307 | INFO     | mean x: 1764033997.1734905
[2025-11-25 14:41:28] 2025-11-25 13:40:49,308 | INFO     | mean y: 2829393.735600278
[2025-11-25 14:41:28] 2025-11-25 13:40:49,308 | INFO     | intersect: -7955822233.986127
[2025-11-25 14:41:28] 2025-11-25 13:40:49,310 | INFO     | chi2: 28.378026577350266
[2025-11-25 14:41:28] 2025-11-25 13:40:49,312 | INFO     | sum of square deviations: 918213750897.718
[2025-11-25 14:41:28] 2025-11-25 13:40:49,370 | INFO     | sum of deviations: 4646914992865.796
[2025-11-25 14:41:28] 2025-11-25 13:40:49,371 | INFO     | mean x: 1764033844.6775765
[2025-11-25 14:41:28] 2025-11-25 13:40:49,371 | INFO     | mean y: 2836694.885097493
[2025-11-25 14:41:28] 2025-11-25 13:40:49,371 | INFO     | intersect: -8924621985.341139
[2025-11-25 14:41:28] 2025-11-25 13:40:49,373 | INFO     | chi2: 25.369908952501987
[2025-11-25 14:41:28] 2025-11-25 13:40:49,373 | INFO     | current chi2=25.369908952501987 (change=10.600164943284632 %)
[2025-11-25 14:41:28] 2025-11-25 13:40:49,373 | INFO     | right removable region: 1435
[2025-11-25 14:41:28] 2025-11-25 13:40:49,375 | INFO     | sum of square deviations: 918212719387.7173
[2025-11-25 14:41:28] 2025-11-25 13:40:49,429 | INFO     | sum of deviations: 3572226751120.7393
[2025-11-25 14:41:28] 2025-11-25 13:40:49,430 | INFO     | mean x: 1764034149.6775765
[2025-11-25 14:41:28] 2025-11-25 13:40:49,430 | INFO     | mean y: 2839119.016713092
[2025-11-25 14:41:28] 2025-11-25 13:40:49,430 | INFO     | intersect: -6859982367.022766
[2025-11-25 14:41:28] 2025-11-25 13:40:49,432 | INFO     | chi2: 23.34474500947964
[2025-11-25 14:41:28] 2025-11-25 13:40:49,432 | INFO     | current chi2=23.34474500947964 (change=17.73654540125036 %)
[2025-11-25 14:41:28] 2025-11-25 13:40:49,432 | INFO     | left removable region: 10
[2025-11-25 14:41:28] 2025-11-25 13:40:49,434 | INFO     | sum of square deviations: 897273136888.3469
[2025-11-25 14:41:28] 2025-11-25 13:40:49,495 | INFO     | sum of deviations: 3581357830906.6763
[2025-11-25 14:41:28] 2025-11-25 13:40:49,496 | INFO     | mean x: 1764034119.1866667
[2025-11-25 14:41:28] 2025-11-25 13:40:49,496 | INFO     | mean y: 2857011.1515789474
[2025-11-25 14:41:28] 2025-11-25 13:40:49,496 | INFO     | intersect: -7038073054.6304655
[2025-11-25 14:41:28] 2025-11-25 13:40:49,498 | INFO     | chi2: 15.593005950873579
[2025-11-25 14:41:28] 2025-11-25 13:40:49,498 | INFO     | current memory leak: 3.99 B/s (using 1425 data points, chi2=15.59)
[2025-11-25 14:41:28] 2025-11-25 13:40:49,506 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-25 14:41:28] 2025-11-25 13:40:49,506 | INFO     | ..............................
[2025-11-25 14:41:28] 2025-11-25 13:40:49,506 | INFO     | . Timing measurements:
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | . get job = 0 s
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | . initial setup = 8 s
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | . payload setup = 176 s
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | . stage-in = 0 s
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | . payload execution = 88029 s
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | . stage-out = 5 s
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | . log creation = 1 s
[2025-11-25 14:41:28] 2025-11-25 13:40:49,507 | INFO     | ..............................
[2025-11-25 14:41:28] 2025-11-25 13:40:49,976 | INFO     | time since job start (88525s) is within the limit (172800.0s)
[2025-11-25 14:41:28] 2025-11-25 13:40:50,077 | INFO     | 
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | job summary report
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | --------------------------------------------------
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | PanDA job id: 6893884377
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | task id: 47523449
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | errors: (none)
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | pilot state: finished 
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | transexitcode: 0
[2025-11-25 14:41:28] 2025-11-25 13:40:50,078 | INFO     | exeerrorcode: 0
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | exeerrordiag: 
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | exitcode: 0
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | exitmsg: OK
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | cpuconsumptiontime: 339623 s
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | nevents: 1000
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | neventsw: 0
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | pid: 10145
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | pgrp: 10145
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | corecount: 8
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | event service: False
[2025-11-25 14:41:28] 2025-11-25 13:40:50,079 | INFO     | sizes: {0: 2284139, 1: 2284338, 12: 2284338, 23: 2284366, 33: 2284394, 44: 2284450, 55: 2284606, 66: 2284634, 76: 2284662, 87: 2284718, 98: 2284746, 100: 2285316, 
[2025-11-25 14:41:28] 2025-11-25 13:40:50,080 | INFO     | --------------------------------------------------
[2025-11-25 14:41:28] 2025-11-25 13:40:50,080 | INFO     | 
[2025-11-25 14:41:28] 2025-11-25 13:40:50,080 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-25 14:41:28] 2025-11-25 13:40:50,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 14:41:28] 2025-11-25 13:40:50,596 | INFO     | job 6893884377 has completed (purged errors)
[2025-11-25 14:41:28] 2025-11-25 13:40:50,597 | INFO     | overall cleanup function is called
[2025-11-25 14:41:28] 2025-11-25 13:40:51,627 | INFO     | --- collectZombieJob: --- 10, [10145]
[2025-11-25 14:41:28] 2025-11-25 13:40:51,628 | INFO     | zombie collector waiting for pid 10145
[2025-11-25 14:41:28] 2025-11-25 13:40:51,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 14:41:28] 2025-11-25 13:40:51,628 | INFO     | collected zombie processes
[2025-11-25 14:41:28] 2025-11-25 13:40:51,628 | INFO     | will attempt to kill all subprocesses of pid=10145
[2025-11-25 14:41:28] 2025-11-25 13:40:51,768 | INFO     | process IDs to be killed: [10145] (in reverse order)
[2025-11-25 14:41:28] 2025-11-25 13:40:52,188 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 14:41:28] 2025-11-25 13:40:52,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 14:41:28] 2025-11-25 13:40:52,193 | INFO     | did not find any defunct processes belonging to 10145
[2025-11-25 14:41:28] 2025-11-25 13:40:52,196 | INFO     | did not find any defunct processes belonging to 10145
[2025-11-25 14:41:28] 2025-11-25 13:40:52,227 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 14:41:28] 2025-11-25 13:40:52,227 | INFO     | ready for new job
[2025-11-25 14:41:28] 2025-11-25 13:40:52,227 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 14:41:28] 2025-11-25 13:40:52,234 | INFO     | ***************************************
[2025-11-25 14:41:28] 2025-11-25 13:40:52,235 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 14:41:28] 2025-11-25 13:40:52,235 | INFO     | ***************************************
[2025-11-25 14:41:28] 2025-11-25 13:40:52,235 | INFO     | 
[2025-11-25 14:41:28] 2025-11-25 13:40:52,236 | INFO     | pilot is running in a VM
[2025-11-25 14:41:28] 2025-11-25 13:40:52,236 | INFO     | architecture information:
[2025-11-25 14:41:28] 2025-11-25 13:40:52,241 | INFO     | executing command: cat /etc/os-release
[2025-11-25 14:41:28] 2025-11-25 13:40:52,409 | INFO     | cat /etc/os-release:
[2025-11-25 14:41:28] NAME="CentOS Linux"
[2025-11-25 14:41:28] VERSION="7 (Core)"
[2025-11-25 14:41:28] ID="centos"
[2025-11-25 14:41:28] ID_LIKE="rhel fedora"
[2025-11-25 14:41:28] VERSION_ID="7"
[2025-11-25 14:41:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 14:41:28] ANSI_COLOR="0;31"
[2025-11-25 14:41:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 14:41:28] HOME_URL="https://www.centos.org/"
[2025-11-25 14:41:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 14:41:28] 
[2025-11-25 14:41:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 14:41:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 14:41:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 14:41:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 14:41:28] 
[2025-11-25 14:41:28] 2025-11-25 13:40:52,409 | INFO     | ***************************************
[2025-11-25 14:41:28] 2025-11-25 13:40:52,913 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-25 14:41:28] 2025-11-25 13:40:53,109 | INFO     | sufficient remaining disk space (495151218688 B)
[2025-11-25 14:41:28] 2025-11-25 13:40:53,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:41:28] 2025-11-25 13:40:53,109 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:41:28] 2025-11-25 13:40:53,109 | INFO     | update_server=False
[2025-11-25 14:41:28] 2025-11-25 13:40:53,110 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:41:28] 2025-11-25 13:40:53,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:41:28] 2025-11-25 13:40:53,110 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:41:28] 2025-11-25 13:40:53,111 | INFO     | aborting loop
[2025-11-25 14:41:28] 2025-11-25 13:40:53,180 | INFO     | all data control threads have been joined
[2025-11-25 14:41:28] 2025-11-25 13:40:53,736 | INFO     | all job control threads have been joined
[2025-11-25 14:41:28] 2025-11-25 13:40:53,867 | INFO     | all payload control threads have been joined
[2025-11-25 14:41:28] 2025-11-25 13:40:53,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:41:28] 2025-11-25 13:40:54,116 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,117 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,187 | INFO     | [data] control thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,201 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,257 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,258 | INFO     | [job] validate thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,259 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,602 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:41:28] 2025-11-25 13:40:54,703 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,742 | INFO     | [job] control thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:54,874 | INFO     | [payload] control thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:55,223 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:55,309 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:55,680 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:55,961 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:57,119 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:41:28] 2025-11-25 13:40:58,000 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:41:28] 2025-11-25 13:40:58,283 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208906180416)>', '<ExcThread(monitor, started 140208292996864)>']
[2025-11-25 14:41:28] 2025-11-25 13:41:03,309 | INFO     | all workflow threads have been joined
[2025-11-25 14:41:28] 2025-11-25 13:41:03,310 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:41:28] 2025-11-25 13:41:03,310 | INFO     | traces error code: 0
[2025-11-25 14:41:28] 2025-11-25 13:41:03,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:41:28] 2025-11-25 13:41:23,137 | INFO     | PID=3673 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 14:41:28] 2025-11-25 13:41:23,137 | INFO     | .. there are 9 such processes running
[2025-11-25 14:41:28] 2025-11-25 13:41:23,138 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:41:28] 2025-11-25 13:41:23,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:41:28] 2025-11-25 13:41:23,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:41:28] 2025-11-25 13:41:23,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:41:28] 2025-11-25 13:41:23,138 | INFO     | [monitor] control thread has ended
[2025-11-25 14:41:28] 2025-11-25 13:41:23,534 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:41:28] 2025-11-25 13:41:23,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:41:28] 2025-11-25 13:41:23,730 [wrapper] pilotpid: 3673
[2025-11-25 14:41:28] 2025-11-25 13:41:23,849 [wrapper] Pilot exit status: 0
[2025-11-25 14:41:28] 2025-11-25 13:41:24,324 [wrapper] pandaids: 6893884377
[2025-11-25 14:41:28] 2025-11-25 13:41:25,483 [wrapper] cleanup supervisor_pilot 14488 3674
[2025-11-25 14:41:28] 2025-11-25 13:41:25,584 [wrapper] Test setup, not cleaning
[2025-11-25 14:41:28] 2025-11-25 13:41:25,675 [wrapper] apfmon messages muted
[2025-11-25 14:41:28] 2025-11-25 13:41:25,744 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:41:28] 2025-11-25 13:41:25,816 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:41:28]  *** Error codes and diagnostics ***
[2025-11-25 14:41:28]     "exeErrorCode": 0,
[2025-11-25 14:41:28]     "exeErrorDiag": "",
[2025-11-25 14:41:28]     "pilotErrorCode": 0,
[2025-11-25 14:41:28]     "pilotErrorDiag": "",
[2025-11-25 14:41:28]  *** Listing of results directory ***
[2025-11-25 14:41:28] total 1335376
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc    576529 Nov 20 22:12 pilot3.tar.gz
[2025-11-25 14:41:28] -rwx------. 1 boinc boinc     36292 Nov 20 22:47 runpilot2-wrapper.sh
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc      5112 Nov 20 22:47 queuedata.json
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc       100 Nov 24 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:41:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 14:00 run_atlas
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc       105 Nov 24 14:00 job.xml
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc      6390 Nov 24 14:00 init_data.xml
[2025-11-25 14:41:28] -rw-r--r--. 2 boinc boinc 410188426 Nov 24 14:00 EVNT.47493127._000927.pool.root.1
[2025-11-25 14:41:28] -rw-r--r--. 2 boinc boinc     15847 Nov 24 14:00 start_atlas.sh
[2025-11-25 14:41:28] drwxrwx--x. 2 boinc boinc        68 Nov 24 14:00 shared
[2025-11-25 14:41:28] -rw-r--r--. 2 boinc boinc    590099 Nov 24 14:00 input.tar.gz
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc         0 Nov 24 14:00 boinc_lockfile
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc      2786 Nov 24 14:01 pandaJob.out
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc    988279 Nov 24 14:05 agis_schedconf.cvmfs.json
[2025-11-25 14:41:28] drwx------. 5 boinc boinc      4096 Nov 24 14:05 pilot3
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc       533 Nov 25 14:17 boinc_task_state.xml
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc 924648101 Nov 25 14:37 HITS.47523449._009267.pool.root.1
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc      1032 Nov 25 14:38 memory_monitor_summary.json
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc   1516240 Nov 25 14:39 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc   2517442 Nov 25 14:39 log.47523449._009267.job.log.tgz.1
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc        95 Nov 25 14:40 pilot_heartbeat.json
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc      7960 Nov 25 14:40 heartbeat.json
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc        29 Nov 25 14:40 wrapper_checkpoint.txt
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc      8192 Nov 25 14:40 boinc_mmap_file
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc       819 Nov 25 14:41 pilotlog.txt
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc  11828302 Nov 25 14:41 log.47523449._009267.job.log.1
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc       353 Nov 25 14:41 output.list
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc       620 Nov 25 14:41 runtime_log
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc  14366720 Nov 25 14:41 result.tar.gz
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc      8817 Nov 25 14:41 runtime_log.err
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc       662 Nov 25 14:41 R1bKDmUgRg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmh6GKDmvwYR2n.diag
[2025-11-25 14:41:28] -rw-r--r--. 1 boinc boinc     21501 Nov 25 14:41 stderr.txt
[2025-11-25 14:41:28] HITS file was successfully produced:
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc 924648101 Nov 25 14:37 shared/HITS.pool.root.1
[2025-11-25 14:41:28]  *** Contents of shared directory: ***
[2025-11-25 14:41:28] total 1318184
[2025-11-25 14:41:28] -rw-r--r--. 2 boinc boinc 410188426 Nov 24 14:00 ATLAS.root_0
[2025-11-25 14:41:28] -rw-r--r--. 2 boinc boinc     15847 Nov 24 14:00 start_atlas.sh
[2025-11-25 14:41:28] -rw-r--r--. 2 boinc boinc    590099 Nov 24 14:00 input.tar.gz
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc 924648101 Nov 25 14:37 HITS.pool.root.1
[2025-11-25 14:41:28] -rw-------. 1 boinc boinc  14366720 Nov 25 14:41 result.tar.gz
14:41:30 (32327): run_atlas exited; CPU time 339979.484945
14:41:30 (32327): called boinc_finish(0)

</stderr_txt>
]]>

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