Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:48:14 (951840): wrapper (7.7.26015): starting
12:48:14 (951840): wrapper: running run_atlas (--nthreads 11)
[2025-11-21 12:48:14] Arguments: --nthreads 11
[2025-11-21 12:48:14] Threads: 11
[2025-11-21 12:48:14] Checking for CVMFS
[2025-11-21 12:48:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:48:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:48:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:48:17] 2.13.3.0 290515 25928 361632 153138 2 537 20890600 40960001 14914 16776704 0 124459811 99.748 80269777 38468 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 12:48:17] CVMFS is ok
[2025-11-21 12:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:48:17] Further information can be found at the LHC@home message board.
[2025-11-21 12:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:48:17] Checking for apptainer binary...
[2025-11-21 12:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:48:17] Running /usr/bin/apptainer --version
[2025-11-21 12:48:17] apptainer version 1.4.4-1.el9
[2025-11-21 12:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:48:18] c6-5-37-4.aglt2.org
[2025-11-21 12:48:18] apptainer works
[2025-11-21 12:48:18] Set ATHENA_PROC_NUMBER=11
[2025-11-21 12:48:18] Set ATHENA_CORE_NUMBER=11
[2025-11-21 12:48:18] Starting ATLAS job with PandaID=6894257861
[2025-11-21 12:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:00:07 (951840): BOINC client no longer exists - exiting
00:00:07 (951840): timer handler: client dead, exiting
00:11:22 (3329722): wrapper (7.7.26015): starting
00:11:22 (3329722): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:11:22] Arguments: --nthreads 8
[2025-11-22 00:11:22] Threads: 8
[2025-11-22 00:11:22] This job has been restarted, cleaning up previous attempt
[2025-11-22 00:11:22] Checking for CVMFS
[2025-11-22 00:11:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:11:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:11:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:11:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:11:23] 2.13.3.0 290515 26611 357340 153159 0 383 31044994 40960000 21416 16776704 0 127629450 99.743 83458561 38323 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:11:23] CVMFS is ok
[2025-11-22 00:11:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:11:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:11:23] Further information can be found at the LHC@home message board.
[2025-11-22 00:11:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:11:23] Checking for apptainer binary...
[2025-11-22 00:11:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:11:23] Running /usr/bin/apptainer --version
[2025-11-22 00:11:23] apptainer version 1.4.4-1.el9
[2025-11-22 00:11:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:11:23] c6-5-37-4.aglt2.org
[2025-11-22 00:11:23] apptainer works
[2025-11-22 00:11:23] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:11:23] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:11:23] Starting ATLAS job with PandaID=6894257861
[2025-11-22 00:11:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:18:12]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:18:12] 2025-11-23 01:17:27,040 | INFO     | monitor loop #4369: job 0:6894257861 is in state 'finished'
[2025-11-22 20:18:12] 2025-11-23 01:17:27,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:18:12] 2025-11-23 01:17:28,324 | INFO     | time since job start (72355s) is within the limit (172800.0s)
[2025-11-22 20:18:12] 2025-11-23 01:17:29,565 | INFO     | monitor loop #4370: job 0:6894257861 is in state 'finished'
[2025-11-22 20:18:12] 2025-11-23 01:17:29,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:18:12] 2025-11-23 01:17:30,345 | INFO     | time since job start (72357s) is within the limit (172800.0s)
[2025-11-22 20:18:12] 2025-11-23 01:17:32,076 | INFO     | monitor loop #4371: job 0:6894257861 is in state 'finished'
[2025-11-22 20:18:12] 2025-11-23 01:17:32,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:18:12] 2025-11-23 01:17:32,361 | INFO     | time since job start (72359s) is within the limit (172800.0s)
[2025-11-22 20:18:12] 2025-11-23 01:17:34,382 | INFO     | time since job start (72361s) is within the limit (172800.0s)
[2025-11-22 20:18:12] 2025-11-23 01:17:34,585 | INFO     | monitor loop #4372: job 0:6894257861 is in state 'finished'
[2025-11-22 20:18:12] 2025-11-23 01:17:34,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:18:12] 2025-11-23 01:17:36,677 | INFO     | PID=3343587 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:18:12] 2025-11-23 01:17:36,678 | INFO     | .. there are 31 such processes running
[2025-11-22 20:18:12] 2025-11-23 01:17:37,123 | INFO     | monitor loop #4373: job 0:6894257861 is in state 'finished'
[2025-11-22 20:18:12] 2025-11-23 01:17:37,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 20:18:12] 2025-11-23 01:17:37,678 | INFO     | time since job start (72364s) is within the limit (172800.0s)
[2025-11-22 20:18:12] 2025-11-23 01:17:38,643 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 20:18:12] 2025-11-23 01:17:38,665 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2811.198482142858
[2025-11-22 20:18:12] 2025-11-23 01:17:38,710 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6894257861/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:18:12] 2025-11-23 01:17:38,711 | INFO     | extracted standard info from prmon json
[2025-11-22 20:18:12] 2025-11-23 01:17:38,711 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:18:12] 2025-11-23 01:17:38,711 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:18:12] 2025-11-23 01:17:38,783 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:18:12] 2025-11-23 01:17:38,798 | INFO     | sum of square deviations: 517283957103.8215
[2025-11-22 20:18:12] 2025-11-23 01:17:38,880 | INFO     | sum of deviations: -60505938073.2227
[2025-11-22 20:18:12] 2025-11-23 01:17:38,880 | INFO     | mean x: 1763824466.5750422
[2025-11-22 20:18:12] 2025-11-23 01:17:38,880 | INFO     | mean y: 2878682.451939292
[2025-11-22 20:18:12] 2025-11-23 01:17:38,881 | INFO     | intersect: 209190617.08865365
[2025-11-22 20:18:12] 2025-11-23 01:17:38,891 | INFO     | chi2: 34.004581978531085
[2025-11-22 20:18:12] 2025-11-23 01:17:38,893 | INFO     | sum of square deviations: 510769822744.7009
[2025-11-22 20:18:12] 2025-11-23 01:17:38,988 | INFO     | sum of deviations: 338429165607.8823
[2025-11-22 20:18:12] 2025-11-23 01:17:38,988 | INFO     | mean x: 1763824314.0838273
[2025-11-22 20:18:12] 2025-11-23 01:17:38,989 | INFO     | mean y: 2888018.9102455545
[2025-11-22 20:18:12] 2025-11-23 01:17:38,989 | INFO     | intersect: -1165798078.6485162
[2025-11-22 20:18:12] 2025-11-23 01:17:39,002 | INFO     | chi2: 30.358265843575143
[2025-11-22 20:18:12] 2025-11-23 01:17:39,002 | INFO     | current chi2=30.358265843575143 (change=10.723014143382374 %)
[2025-11-22 20:18:12] 2025-11-23 01:17:39,002 | INFO     | right removable region: 1180
[2025-11-22 20:18:12] 2025-11-23 01:17:39,004 | INFO     | sum of square deviations: 510768682650.5193
[2025-11-22 20:18:12] 2025-11-23 01:17:39,126 | INFO     | sum of deviations: -356541766547.7902
[2025-11-22 20:18:12] 2025-11-23 01:17:39,127 | INFO     | mean x: 1763824619.0795937
[2025-11-22 20:18:12] 2025-11-23 01:17:39,127 | INFO     | mean y: 2885602.763759526
[2025-11-22 20:18:12] 2025-11-23 01:17:39,127 | INFO     | intersect: 1234122299.3907042
[2025-11-22 20:18:12] 2025-11-23 01:17:39,154 | INFO     | chi2: 32.089869505691496
[2025-11-22 20:18:12] 2025-11-23 01:17:39,155 | INFO     | current chi2=32.089869505691496 (change=5.6307484504542655 %)
[2025-11-22 20:18:12] 2025-11-23 01:17:39,155 | INFO     | left removable region: 10
[2025-11-22 20:18:12] 2025-11-23 01:17:39,156 | INFO     | sum of square deviations: 496629474531.96936
[2025-11-22 20:18:12] 2025-11-23 01:17:39,255 | INFO     | sum of deviations: 8975751608.411041
[2025-11-22 20:18:12] 2025-11-23 01:17:39,256 | INFO     | mean x: 1763824588.5948718
[2025-11-22 20:18:12] 2025-11-23 01:17:39,256 | INFO     | mean y: 2899192.735042735
[2025-11-22 20:18:12] 2025-11-23 01:17:39,256 | INFO     | intersect: -28979002.57939231
[2025-11-22 20:18:12] 2025-11-23 01:17:39,257 | INFO     | chi2: 27.71374044070607
[2025-11-22 20:18:12] 2025-11-23 01:17:39,257 | INFO     | current memory leak: 0.02 B/s (using 1170 data points, chi2=27.71)
[2025-11-22 20:18:12] 2025-11-23 01:17:39,258 | INFO     | could have reported an average CPU frequency of 2919 MHz (43 samples)
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | ..............................
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . Timing measurements:
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . get job = 0 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . initial setup = 1 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . payload setup = 6 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . stage-in = 0 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . payload execution = 72294 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . stage-out = 8 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | . log creation = 2 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,259 | INFO     | ..............................
[2025-11-22 20:18:12] 2025-11-23 01:17:39,340 | INFO     | 
[2025-11-22 20:18:12] 2025-11-23 01:17:39,340 | INFO     | job summary report
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | --------------------------------------------------
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | PanDA job id: 6894257861
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | task id: 47533967
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | errors: (none)
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | pilot state: finished 
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | transexitcode: 0
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | exeerrorcode: 0
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | exeerrordiag: 
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | exitcode: 0
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | exitmsg: OK
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | cpuconsumptiontime: 234880 s
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | nevents: 1000
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | neventsw: 0
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | pid: 3389955
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | pgrp: 3389955
[2025-11-22 20:18:12] 2025-11-23 01:17:39,341 | INFO     | corecount: 8
[2025-11-22 20:18:12] 2025-11-23 01:17:39,342 | INFO     | event service: False
[2025-11-22 20:18:12] 2025-11-23 01:17:39,342 | INFO     | sizes: {0: 2298635, 1: 2298834, 5: 2299096, 11: 2299152, 72306: 2358231, 72307: 2358230, 72316: 2367408, 72319: 2367464, 72350: 2367710}
[2025-11-22 20:18:12] 2025-11-23 01:17:39,342 | INFO     | --------------------------------------------------
[2025-11-22 20:18:12] 2025-11-23 01:17:39,342 | INFO     | 
[2025-11-22 20:18:12] 2025-11-23 01:17:39,342 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-22 20:18:12] 2025-11-23 01:17:39,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | job 6894257861 has completed (purged errors)
[2025-11-22 20:18:12] 2025-11-23 01:17:39,645 | INFO     | overall cleanup function is called
[2025-11-22 20:18:12] 2025-11-23 01:17:40,678 | INFO     | --- collectZombieJob: --- 10, [3389955]
[2025-11-22 20:18:12] 2025-11-23 01:17:40,678 | INFO     | zombie collector waiting for pid 3389955
[2025-11-22 20:18:12] 2025-11-23 01:17:40,679 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:18:12] 2025-11-23 01:17:40,679 | INFO     | collected zombie processes
[2025-11-22 20:18:12] 2025-11-23 01:17:40,679 | INFO     | will attempt to kill all subprocesses of pid=3389955
[2025-11-22 20:18:12] 2025-11-23 01:17:41,504 | INFO     | process IDs to be killed: [3389955] (in reverse order)
[2025-11-22 20:18:12] 2025-11-23 01:17:41,742 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:18:12] 2025-11-23 01:17:41,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:18:12] 2025-11-23 01:17:41,788 | INFO     | did not find any defunct processes belonging to 3389955
[2025-11-22 20:18:12] 2025-11-23 01:17:41,836 | INFO     | did not find any defunct processes belonging to 3389955
[2025-11-22 20:18:12] 2025-11-23 01:17:41,926 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:18:12] 2025-11-23 01:17:41,927 | INFO     | ready for new job
[2025-11-22 20:18:12] 2025-11-23 01:17:41,927 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:18:12] 2025-11-23 01:17:42,013 | INFO     | ***************************************
[2025-11-22 20:18:12] 2025-11-23 01:17:42,014 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:18:12] 2025-11-23 01:17:42,014 | INFO     | ***************************************
[2025-11-22 20:18:12] 2025-11-23 01:17:42,014 | INFO     | 
[2025-11-22 20:18:12] 2025-11-23 01:17:42,041 | INFO     | architecture information:
[2025-11-22 20:18:12] 2025-11-23 01:17:42,064 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:18:12] 2025-11-23 01:17:42,173 | INFO     | cat /etc/os-release:
[2025-11-22 20:18:12] NAME="CentOS Linux"
[2025-11-22 20:18:12] VERSION="7 (Core)"
[2025-11-22 20:18:12] ID="centos"
[2025-11-22 20:18:12] ID_LIKE="rhel fedora"
[2025-11-22 20:18:12] VERSION_ID="7"
[2025-11-22 20:18:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:18:12] ANSI_COLOR="0;31"
[2025-11-22 20:18:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:18:12] HOME_URL="https://www.centos.org/"
[2025-11-22 20:18:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:18:12] 
[2025-11-22 20:18:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:18:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:18:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:18:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:18:12] 
[2025-11-22 20:18:12] 2025-11-23 01:17:42,173 | INFO     | ***************************************
[2025-11-22 20:18:12] 2025-11-23 01:17:42,675 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-22 20:18:12] 2025-11-23 01:17:42,755 | INFO     | sufficient remaining disk space (70052216832 B)
[2025-11-22 20:18:12] 2025-11-23 01:17:42,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:18:12] 2025-11-23 01:17:42,756 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:18:12] 2025-11-23 01:17:42,756 | INFO     | update_server=False
[2025-11-22 20:18:12] 2025-11-23 01:17:42,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:18:12] 2025-11-23 01:17:42,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:18:12] 2025-11-23 01:17:42,762 | INFO     | all data control threads have been joined
[2025-11-22 20:18:12] 2025-11-23 01:17:42,946 | INFO     | all job control threads have been joined
[2025-11-22 20:18:12] 2025-11-23 01:17:43,188 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:18:12] 2025-11-23 01:17:43,188 | INFO     | aborting loop
[2025-11-22 20:18:12] 2025-11-23 01:17:43,488 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:18:12] 2025-11-23 01:17:43,584 | INFO     | all payload control threads have been joined
[2025-11-22 20:18:12] 2025-11-23 01:17:43,764 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:43,768 | INFO     | [data] control thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:43,952 | INFO     | [job] control thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:44,046 | INFO     | [job] validate thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:44,068 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:44,120 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:44,201 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:44,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:18:12] 2025-11-23 01:17:44,421 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:44,590 | INFO     | [payload] control thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:44,940 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:18:12] 2025-11-23 01:17:44,999 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:45,000 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:45,180 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:45,188 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:45,361 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:45,495 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:46,784 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:18:12] 2025-11-23 01:17:48,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139984159180608)>', '<ExcThread(monitor, started 139983830632192)>']
[2025-11-22 20:18:12] 2025-11-23 01:17:53,783 | INFO     | all workflow threads have been joined
[2025-11-22 20:18:12] 2025-11-23 01:17:53,783 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:18:12] 2025-11-23 01:17:53,796 | INFO     | traces error code: 0
[2025-11-22 20:18:12] 2025-11-23 01:17:53,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:18:12] 2025-11-23 01:18:11,752 | INFO     | PID=3343587 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:18:12] 2025-11-23 01:18:11,752 | INFO     | .. there are 30 such processes running
[2025-11-22 20:18:12] 2025-11-23 01:18:11,753 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:18:12] 2025-11-23 01:18:11,753 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:18:12] 2025-11-23 01:18:11,753 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:18:12] 2025-11-23 01:18:11,753 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:18:12] 2025-11-23 01:18:11,753 | INFO     | [monitor] control thread has ended
[2025-11-22 20:18:12] 2025-11-23 01:18:11,901 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:18:12] 2025-11-23 01:18:11,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:18:12] 2025-11-23 01:18:11,906 [wrapper] pilotpid: 3343587
[2025-11-22 20:18:12] 2025-11-23 01:18:11,909 [wrapper] Pilot exit status: 0
[2025-11-22 20:18:12] 2025-11-23 01:18:12,014 [wrapper] pandaids: 6894257861 6894257861
[2025-11-22 20:18:12] 2025-11-23 01:18:12,146 [wrapper] cleanup supervisor_pilot 2936160 3343588
[2025-11-22 20:18:12] 2025-11-23 01:18:12,150 [wrapper] Test setup, not cleaning
[2025-11-22 20:18:12] 2025-11-23 01:18:12,153 [wrapper] apfmon messages muted
[2025-11-22 20:18:12] 2025-11-23 01:18:12,155 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:18:12] 2025-11-23 01:18:12,157 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:18:12]  *** Error codes and diagnostics ***
[2025-11-22 20:18:12]     "exeErrorCode": 0,
[2025-11-22 20:18:12]     "exeErrorDiag": "",
[2025-11-22 20:18:12]     "pilotErrorCode": 0,
[2025-11-22 20:18:12]     "pilotErrorDiag": "",
[2025-11-22 20:18:12]  *** Listing of results directory ***
[2025-11-22 20:18:12] total 1747700
[2025-11-22 20:18:12] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 22:09 pilot3.tar.gz
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 22:25 queuedata.json
[2025-11-22 20:18:12] -rwx------. 1 boincer umatlas     36292 Nov 20 22:26 runpilot2-wrapper.sh
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas       100 Nov 21 12:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:18:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 12:48 run_atlas
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas       105 Nov 21 12:48 job.xml
[2025-11-22 20:18:12] -rw-r--r--. 3 boincer umatlas 411442774 Nov 21 12:48 EVNT.47493127._002163.pool.root.1
[2025-11-22 20:18:12] -rw-r--r--. 3 boincer umatlas 411442774 Nov 21 12:48 ATLAS.root_0
[2025-11-22 20:18:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 12:48 start_atlas.sh
[2025-11-22 20:18:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 12:48 shared
[2025-11-22 20:18:12] -rw-r--r--. 2 boincer umatlas    590106 Nov 21 12:48 input.tar.gz
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas         0 Nov 21 12:48 boinc_lockfile
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas      2785 Nov 22 00:11 pandaJob.out
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas        57 Nov 22 00:11 setup.sh.local
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas    989752 Nov 22 00:11 agis_schedconf.cvmfs.json
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas       533 Nov 22 19:20 boinc_task_state.xml
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas      6842 Nov 22 20:12 init_data.xml
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas 939870636 Nov 22 20:15 HITS.47533967._001343.pool.root.1
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas      1070 Nov 22 20:16 memory_monitor_summary.json
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:17 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas   2285131 Nov 22 20:17 log.47533967._001343.job.log.tgz.1
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas      8665 Nov 22 20:17 heartbeat.json
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 20:18 boinc_mmap_file
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas        29 Nov 22 20:18 wrapper_checkpoint.txt
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas        96 Nov 22 20:18 pilot_heartbeat.json
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas       823 Nov 22 20:18 pilotlog.txt
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas   9196304 Nov 22 20:18 log.47533967._001343.job.log.1
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas       353 Nov 22 20:18 output.list
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:18 runtime_log
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas  11499520 Nov 22 20:18 result.tar.gz
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas      9433 Nov 22 20:18 runtime_log.err
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas       791 Nov 22 20:18 FnDLDmSyWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuxIKDmfVdSYo.diag
[2025-11-22 20:18:12] -rw-r--r--. 1 boincer umatlas     24157 Nov 22 20:18 stderr.txt
[2025-11-22 20:18:12] HITS file was successfully produced:
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas 939870636 Nov 22 20:15 shared/HITS.pool.root.1
[2025-11-22 20:18:12]  *** Contents of shared directory: ***
[2025-11-22 20:18:12] total 1331480
[2025-11-22 20:18:12] -rw-r--r--. 3 boincer umatlas 411442774 Nov 21 12:48 ATLAS.root_0
[2025-11-22 20:18:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 12:48 start_atlas.sh
[2025-11-22 20:18:12] -rw-r--r--. 2 boincer umatlas    590106 Nov 21 12:48 input.tar.gz
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas 939870636 Nov 22 20:15 HITS.pool.root.1
[2025-11-22 20:18:12] -rw-------. 1 boincer umatlas  11499520 Nov 22 20:18 result.tar.gz
20:18:14 (3329722): run_atlas exited; CPU time 236448.235629
20:18:14 (3329722): called boinc_finish(0)

</stderr_txt>
]]>

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