Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:37:07 (36835): wrapper (7.7.26015): starting
21:37:07 (36835): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 21:37:07] Arguments: --nthreads 12
[2025-11-21 21:37:07] Threads: 12
[2025-11-21 21:37:07] Checking for CVMFS
[2025-11-21 21:37:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:37:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:37:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:37:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:37:16] 2.13.3.0 5957 249 75476 153143 0 90 4556287 102400000 0 130560 15 988136 99.995 12248 4 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-21 21:37:16] CVMFS is ok
[2025-11-21 21:37:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 21:37:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 21:37:16] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 21:37:16] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 21:37:16] Further information can be found at the LHC@home message board.
[2025-11-21 21:37:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:37:16] Checking for apptainer binary...
[2025-11-21 21:37:16] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-21 21:37:16] apptainer is not installed, using version from CVMFS
[2025-11-21 21:37:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:37:16] crocidura-russula
[2025-11-21 21:37:16] apptainer works
[2025-11-21 21:37:16] Set ATHENA_PROC_NUMBER=12
[2025-11-21 21:37:16] Set ATHENA_CORE_NUMBER=12
[2025-11-21 21:37:16] Starting ATLAS job with PandaID=6893852679
[2025-11-21 21:37:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:09:48 (49056): wrapper (7.7.26015): starting
22:09:48 (49056): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 22:09:48] Arguments: --nthreads 12
[2025-11-21 22:09:48] Threads: 12
[2025-11-21 22:09:48] This job has been restarted, cleaning up previous attempt
[2025-11-21 22:09:48] Checking for CVMFS
[2025-11-21 22:09:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:09:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:09:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:09:49] 2.13.3.0 5957 282 80500 153145 3 55 4560574 102400000 0 130560 29 1171718 99.995 14125 4 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-21 22:09:49] CVMFS is ok
[2025-11-21 22:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 22:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 22:09:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 22:09:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 22:09:49] Further information can be found at the LHC@home message board.
[2025-11-21 22:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:09:49] Checking for apptainer binary...
[2025-11-21 22:09:49] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-21 22:09:49] apptainer is not installed, using version from CVMFS
[2025-11-21 22:09:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:09:49] crocidura-russula
[2025-11-21 22:09:49] apptainer works
[2025-11-21 22:09:49] Set ATHENA_PROC_NUMBER=12
[2025-11-21 22:09:49] Set ATHENA_CORE_NUMBER=12
[2025-11-21 22:09:49] Starting ATLAS job with PandaID=6893852679
[2025-11-21 22:09:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 22:21:01]  *** The last 200 lines of the pilot log: ***
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | wrong length of table data, x=[1763763317.0], y=[850777.0] (must be same and length>=4)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | INFO     | could have reported an average CPU frequency of 3822 MHz (4 samples)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | ..............................
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . Timing measurements:
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . get job = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . initial setup = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . payload setup = 2 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . stage-in = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . payload execution = 484 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . stage-out = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . log creation = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | ..............................
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/2/PanDA_Pilot-6893852679/pilotlog.txt
[2025-11-21 22:21:01] 2025-11-21 22:20:19,408 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-21 22:21:01] - Log from pilotlog.txt -
[2025-11-21 22:21:01] 2025-11-21 22:20:19,399 | INFO     | using path: /virtma/boinc/slots/2/PanDA_Pilot-6893852679/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | INFO     | extracted standard info from prmon json
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | wrong length of table data, x=[1763763317.0], y=[850777.0] (must be same and length>=4)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | INFO     | could have reported an average CPU frequency of 3822 MHz (4 samples)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | ..............................
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . Timing measurements:
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . get job = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . initial setup = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . payload setup = 2 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . stage-in = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . payload execution = 484 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . stage-out = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . log creation = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | ..............................
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/2/PanDA_Pilot-6893852679/pilotlog.txt
[2025-11-21 22:21:01] 2025-11-21 22:20:19,408 | WARNING  | 
[2025-11-21 22:21:01] [begin log extracts]
[2025-11-21 22:21:01] - Log from pilotlog.txt -
[2025-11-21 22:21:01] 2025-11-21 22:20:19,399 | INFO     | using path: /virtma/boinc/slots/2/PanDA_Pilot-6893852679/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | INFO     | extracted standard info from prmon json
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | WARNING  | wrong length of table data, x=[1763763317.0], y=[850777.0] (must be same and length>=4)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,400 | INFO     | could have reported an average CPU frequency of 3822 MHz (4 samples)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | ..............................
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . Timing measurements:
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . get job = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . initial setup = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . payload setup = 2 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . stage-in = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . payload execution = 484 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . stage-out = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | . log creation = 0 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | ..............................
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-21 22:21:01] 2025-11-21 22:20:19,401 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/2/PanDA_Pilot-6893852679/pilotlog.txt
[2025-11-21 22:21:01] [end log extracts]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,408 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,408 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-21 22:21:01] 2025-11-21 22:20:19,674 | INFO     | time since job start (625s) is within the limit (172800.0s)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | 
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | job summary report
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | --------------------------------------------------
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | PanDA job id: 6893852679
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | task id: 47523449
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-21 22:18:11,636 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | pilot state: failed 
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | transexitcode: 65
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | exeerrorcode: 65
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | exitcode: 65
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algo
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | cpuconsumptiontime: 30 s
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | nevents: 0
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | neventsw: 0
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | pid: 32625
[2025-11-21 22:21:01] 2025-11-21 22:20:19,746 | INFO     | pgrp: 32625
[2025-11-21 22:21:01] 2025-11-21 22:20:19,747 | INFO     | corecount: 12
[2025-11-21 22:21:01] 2025-11-21 22:20:19,747 | INFO     | event service: False
[2025-11-21 22:21:01] 2025-11-21 22:20:19,747 | INFO     | sizes: {0: 2298806, 2: 2299068, 11: 2299096, 491: 2322927, 492: 2327219, 494: 2327275, 613: 2327597}
[2025-11-21 22:21:01] 2025-11-21 22:20:19,747 | INFO     | --------------------------------------------------
[2025-11-21 22:21:01] 2025-11-21 22:20:19,747 | INFO     | 
[2025-11-21 22:21:01] 2025-11-21 22:20:19,747 | INFO     | executing command: ls -lF /virtma/boinc/slots/2
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | job 6893852679 has completed (purged errors)
[2025-11-21 22:21:01] 2025-11-21 22:20:19,759 | INFO     | overall cleanup function is called
[2025-11-21 22:21:01] 2025-11-21 22:20:20,765 | INFO     | --- collectZombieJob: --- 10, [32625]
[2025-11-21 22:21:01] 2025-11-21 22:20:20,765 | INFO     | zombie collector waiting for pid 32625
[2025-11-21 22:21:01] 2025-11-21 22:20:20,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 22:21:01] 2025-11-21 22:20:20,765 | INFO     | collected zombie processes
[2025-11-21 22:21:01] 2025-11-21 22:20:20,765 | INFO     | will attempt to kill all subprocesses of pid=32625
[2025-11-21 22:21:01] 2025-11-21 22:20:20,846 | INFO     | process IDs to be killed: [32625] (in reverse order)
[2025-11-21 22:21:01] 2025-11-21 22:20:20,879 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 22:21:01] 2025-11-21 22:20:20,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 22:21:01] 2025-11-21 22:20:20,882 | INFO     | did not find any defunct processes belonging to 32625
[2025-11-21 22:21:01] 2025-11-21 22:20:20,884 | INFO     | did not find any defunct processes belonging to 32625
[2025-11-21 22:21:01] 2025-11-21 22:20:20,885 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 22:21:01] 2025-11-21 22:20:20,885 | INFO     | ready for new job
[2025-11-21 22:21:01] 2025-11-21 22:20:20,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 22:21:01] 2025-11-21 22:20:20,885 | INFO     | ***************************************
[2025-11-21 22:21:01] 2025-11-21 22:20:20,886 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 22:21:01] 2025-11-21 22:20:20,886 | INFO     | ***************************************
[2025-11-21 22:21:01] 2025-11-21 22:20:20,886 | INFO     | 
[2025-11-21 22:21:01] 2025-11-21 22:20:20,887 | INFO     | architecture information:
[2025-11-21 22:21:01] 2025-11-21 22:20:20,887 | INFO     | executing command: cat /etc/os-release
[2025-11-21 22:21:01] 2025-11-21 22:20:20,894 | INFO     | cat /etc/os-release:
[2025-11-21 22:21:01] NAME="CentOS Linux"
[2025-11-21 22:21:01] VERSION="7 (Core)"
[2025-11-21 22:21:01] ID="centos"
[2025-11-21 22:21:01] ID_LIKE="rhel fedora"
[2025-11-21 22:21:01] VERSION_ID="7"
[2025-11-21 22:21:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 22:21:01] ANSI_COLOR="0;31"
[2025-11-21 22:21:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 22:21:01] HOME_URL="https://www.centos.org/"
[2025-11-21 22:21:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 22:21:01] 
[2025-11-21 22:21:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 22:21:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 22:21:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 22:21:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 22:21:01] 
[2025-11-21 22:21:01] 2025-11-21 22:20:20,894 | INFO     | ***************************************
[2025-11-21 22:21:01] 2025-11-21 22:20:21,397 | INFO     | executing command: df -mP /virtma/boinc/slots/2
[2025-11-21 22:21:01] 2025-11-21 22:20:21,404 | INFO     | sufficient remaining disk space (955228618752 B)
[2025-11-21 22:21:01] 2025-11-21 22:20:21,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 22:21:01] 2025-11-21 22:20:21,404 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 22:21:01] 2025-11-21 22:20:21,404 | INFO     | update_server=False
[2025-11-21 22:21:01] 2025-11-21 22:20:21,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 22:21:01] 2025-11-21 22:20:21,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:21:01] 2025-11-21 22:20:21,405 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-21 22:21:01] 2025-11-21 22:20:21,405 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 22:21:01] 2025-11-21 22:20:21,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 22:21:01] 2025-11-21 22:20:21,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 22:21:01] 2025-11-21 22:20:21,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:21:01] 2025-11-21 22:20:21,405 | INFO     | aborting loop
[2025-11-21 22:21:01] 2025-11-21 22:20:21,685 | INFO     | all payload control threads have been joined
[2025-11-21 22:21:01] 2025-11-21 22:20:21,960 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 22:21:01] 2025-11-21 22:20:21,976 | INFO     | all job control threads have been joined
[2025-11-21 22:21:01] 2025-11-21 22:20:22,330 | INFO     | all data control threads have been joined
[2025-11-21 22:21:01] 2025-11-21 22:20:22,406 | INFO     | [job] queue monitor thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:22,409 | INFO     | [job] retrieve thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:22,410 | INFO     | [job] job monitor thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:22,434 | INFO     | [payload] failed_post thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:22,690 | INFO     | [payload] control thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:22,786 | INFO     | [data] copytool_in thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:22,982 | INFO     | [job] control thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,334 | INFO     | [data] control thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,370 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,534 | INFO     | [payload] validate_post thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,687 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,770 | INFO     | [job] validate thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,854 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,893 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:23,965 | INFO     | [data] copytool_out thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:24,102 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 22:21:01] 2025-11-21 22:20:28,107 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 22:21:01] 2025-11-21 22:20:55,122 | INFO     | [monitor] cgroup control has ended
[2025-11-21 22:21:01] 2025-11-21 22:20:56,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139818132916032)>', '<ExcThread(monitor, started 139817459365632)>']
[2025-11-21 22:21:01] 2025-11-21 22:20:56,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 22:21:01] 2025-11-21 22:20:56,567 | INFO     | [monitor] control thread has ended
[2025-11-21 22:21:01] 2025-11-21 22:21:01,150 | INFO     | all workflow threads have been joined
[2025-11-21 22:21:01] 2025-11-21 22:21:01,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 22:21:01] 2025-11-21 22:21:01,150 | INFO     | traces error code: 0
[2025-11-21 22:21:01] 2025-11-21 22:21:01,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 22:21:01] 2025-11-21 22:21:01,188 [wrapper] ==== pilot stdout END ====
[2025-11-21 22:21:01] 2025-11-21 22:21:01,190 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 22:21:01] 2025-11-21 22:21:01,192 [wrapper] pilotpid: 12321
[2025-11-21 22:21:01] 2025-11-21 22:21:01,193 [wrapper] Pilot exit status: 0
[2025-11-21 22:21:01] 2025-11-21 22:21:01,197 [wrapper] pandaids: 6893852679 6893852679
[2025-11-21 22:21:01] 2025-11-21 22:21:01,217 [wrapper] cleanup supervisor_pilot 12327 12322
[2025-11-21 22:21:01] 2025-11-21 22:21:01,219 [wrapper] Test setup, not cleaning
[2025-11-21 22:21:01] 2025-11-21 22:21:01,220 [wrapper] apfmon messages muted
[2025-11-21 22:21:01] 2025-11-21 22:21:01,221 [wrapper] ==== wrapper stdout END ====
[2025-11-21 22:21:01] 2025-11-21 22:21:01,223 [wrapper] ==== wrapper stderr END ====
[2025-11-21 22:21:01]  *** Error codes and diagnostics ***
[2025-11-21 22:21:01]     "exeErrorCode": 65,
[2025-11-21 22:21:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2025-11-21 22:21:01]     "pilotErrorCode": 1305,
[2025-11-21 22:21:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2025-11-21 22:21:01]  *** Listing of results directory ***
[2025-11-21 22:21:01] total 805896
[2025-11-21 22:21:01] drwx------ 5 boinc boinc      4096 Nov  5 17:16 pilot3
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:54 pilot3.tar.gz
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:06 queuedata.json
[2025-11-21 22:21:01] -rwx------ 1 boinc boinc     36292 Nov 20 12:06 runpilot2-wrapper.sh
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc       100 Nov 21 21:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 22:21:01] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 21:37 run_atlas
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc       105 Nov 21 21:37 job.xml
[2025-11-21 22:21:01] -rw-r--r-- 2 boinc boinc     15847 Nov 21 21:37 start_atlas.sh
[2025-11-21 22:21:01] drwxrwx--x 2 boinc boinc        68 Nov 21 21:37 shared
[2025-11-21 22:21:01] -rw-r--r-- 2 boinc boinc    590101 Nov 21 21:37 input.tar.gz
[2025-11-21 22:21:01] -rw-r--r-- 3 boinc boinc 410582482 Nov 21 21:37 EVNT.47493127._000395.pool.root.1
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc         0 Nov 21 21:37 boinc_setup_complete
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc         0 Nov 21 21:37 boinc_lockfile
[2025-11-21 22:21:01] -rw-r--r-- 3 boinc boinc 410582482 Nov 21 21:37 ATLAS.root_0
[2025-11-21 22:21:01] -rw------- 1 boinc boinc         0 Nov 21 21:37 agis_ddmendpoints.agis.ALL.json
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc      2786 Nov 21 22:09 pandaJob.out
[2025-11-21 22:21:01] -rw------- 1 boinc boinc    989798 Nov 21 22:09 agis_schedconf.cvmfs.json
[2025-11-21 22:21:01] -rw------- 1 boinc boinc   1271523 Nov 21 22:09 cric_ddmendpoints.json
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc      8923 Nov 21 22:15 init_data.xml
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc       525 Nov 21 22:18 boinc_task_state.xml
[2025-11-21 22:21:01] -rw------- 1 boinc boinc      1008 Nov 21 22:18 memory_monitor_summary.json
[2025-11-21 22:21:01] -rw------- 1 boinc boinc     57387 Nov 21 22:18 log.47523449._003950.job.log.tgz.1
[2025-11-21 22:21:01] -rw------- 1 boinc boinc        96 Nov 21 22:19 pilot_heartbeat.json
[2025-11-21 22:21:01] -rw------- 1 boinc boinc      9217 Nov 21 22:20 heartbeat.json
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc      8192 Nov 21 22:21 boinc_mmap_file
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc        24 Nov 21 22:21 wrapper_checkpoint.txt
[2025-11-21 22:21:01] -rw------- 1 boinc boinc      4552 Nov 21 22:21 pilotlog.txt
[2025-11-21 22:21:01] -rw------- 1 boinc boinc    149149 Nov 21 22:21 log.47523449._003950.job.log.1
[2025-11-21 22:21:01] -rw------- 1 boinc boinc       186 Nov 21 22:21 output.list
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc       620 Nov 21 22:21 runtime_log
[2025-11-21 22:21:01] -rw------- 1 boinc boinc    225280 Nov 21 22:21 result.tar.gz
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc      8745 Nov 21 22:21 runtime_log.err
[2025-11-21 22:21:01] -rw------- 1 boinc boinc       767 Nov 21 22:21 nB1KDmfbIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmiHKDmeVYmpn.diag
[2025-11-21 22:21:01] -rw-r--r-- 1 boinc boinc     25110 Nov 21 22:21 stderr.txt
[2025-11-21 22:21:01] No HITS result produced
[2025-11-21 22:21:01]  *** Contents of shared directory: ***
[2025-11-21 22:21:01] total 401776
[2025-11-21 22:21:01] -rw-r--r-- 2 boinc boinc     15847 Nov 21 21:37 start_atlas.sh
[2025-11-21 22:21:01] -rw-r--r-- 2 boinc boinc    590101 Nov 21 21:37 input.tar.gz
[2025-11-21 22:21:01] -rw-r--r-- 3 boinc boinc 410582482 Nov 21 21:37 ATLAS.root_0
[2025-11-21 22:21:01] -rw------- 1 boinc boinc    225280 Nov 21 22:21 result.tar.gz
22:21:03 (49056): run_atlas exited; CPU time 34.924521
22:21:03 (49056): called boinc_finish(0)

</stderr_txt>
]]>

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