Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-22 05:19:05 (103868): vboxwrapper version 26210
2025-11-22 05:19:05 (103868): BOINC client version: 8.0.2
2025-11-22 05:19:05 (103868): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-22 05:19:06 (103868): Successfully copied 'init_data.xml' to the shared directory.
2025-11-22 05:19:06 (103868): Create VM. (boinc_eea96269d4ab8375, slot#2)
2025-11-22 05:19:07 (103868): Setting Memory Size for VM. (4800MB)
2025-11-22 05:19:08 (103868): Setting CPU Count for VM. (8)
2025-11-22 05:19:08 (103868): Setting Chipset Options for VM.
2025-11-22 05:19:08 (103868): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-22 05:19:09 (103868): Setting Boot Options for VM.
2025-11-22 05:19:09 (103868): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-22 05:19:09 (103868): Enabling VM Network Access.
2025-11-22 05:19:10 (103868): Disabling USB Support for VM.
2025-11-22 05:19:10 (103868): Disabling COM Port Support for VM.
2025-11-22 05:19:10 (103868): Disabling LPT Port Support for VM.
2025-11-22 05:19:10 (103868): Disabling Audio Support for VM.
2025-11-22 05:19:11 (103868): Disabling Clipboard Support for VM.
2025-11-22 05:19:11 (103868): Disabling Drag and Drop Support for VM.
2025-11-22 05:19:11 (103868): Adding storage controller(s) to VM.
2025-11-22 05:19:11 (103868): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-22 05:19:12 (103868): Adding VirtualBox Guest Additions to VM.
2025-11-22 05:19:13 (103868): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-22 05:19:13 (103868): forwarding host port 51485 to guest port 80
2025-11-22 05:19:13 (103868): Enabling remote desktop for VM.
2025-11-22 05:19:13 (103868): Required extension pack not installed, remote desktop not enabled.
2025-11-22 05:19:13 (103868): Enabling shared directory for VM.
2025-11-22 05:19:14 (103868): Starting VM using VBoxManage interface. (boinc_eea96269d4ab8375, slot#2)
2025-11-22 05:19:20 (103868): Successfully started VM. (PID = '95484')
2025-11-22 05:19:20 (103868): Reporting VM Process ID to BOINC.
2025-11-22 05:19:20 (103868): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-22 05:19:20 (103868): Guest Log: CPUID EDX: 0x178bfbff
2025-11-22 05:19:20 (103868): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-22 05:19:20 (103868): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-22 05:19:20 (103868): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-22 05:19:20 (103868): Detected: Web Application Enabled (http://localhost:51485)
2025-11-22 05:19:20 (103868): Preference change detected
2025-11-22 05:19:20 (103868): Setting CPU throttle for VM. (100%)
2025-11-22 05:19:21 (103868): Setting network throttle for VM. (1464KB)
2025-11-22 05:19:21 (103868): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-22 05:19:22 (103868): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-22 05:19:22 (103868): Guest Log: BIOS: Booting from Hard Disk...
2025-11-22 05:19:25 (103868): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-22 05:19:25 (103868): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-22 05:19:25 (103868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-22 05:19:29 (103868): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-22 05:19:29 (103868): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-22 05:19:35 (103868): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.000169 main     Log opened 2025-11-22T05:19:33.898402000Z
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.000329 main     OS Product: Linux
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.000375 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.000413 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.000452 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.000453 main     Process ID: 1372
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.000453 main     Package type: LINUX_64BITS_GENERIC
2025-11-22 05:19:35 (103868): Guest Log: 00:00:00.001701 main     5.2.32 r132073 started. Verbose level = 0
2025-11-22 05:19:35 (103868): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-22 05:19:35 (103868): Guest Log: [INFO] Mounting shared directory
2025-11-22 05:19:35 (103868): Guest Log: [INFO] Checking for init_data.xml
2025-11-22 05:19:39 (103868): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-22 05:19:39 (103868): Guest Log: [INFO] Detected branch: prod
2025-11-22 05:19:40 (103868): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-22 05:19:40 (103868): Guest Log: Copying input files
2025-11-22 05:19:41 (103868): Guest Log: Copied input files into RunAtlas.
2025-11-22 05:19:41 (103868): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-22 05:19:41 (103868): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-22 05:19:41 (103868): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-22 05:19:41 (103868): Guest Log: Further information can be found at the LHC@home message board.
2025-11-22 05:19:45 (103868): Guest Log: 00:00:10.004855 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 388 693 000ns (GuestNow=1 763 817 585 289 874 000 ns GuestLast=1 763 788 773 901 181 000 ns fSetTimeLastLoop=true )
2025-11-22 05:19:52 (103868): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-22 05:19:52 (103868): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-22 05:19:52 (103868): Guest Log: 2.6.3.0 1655 0 30128 153173 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-22 05:19:53 (103868): Guest Log: copied the webapp to /var/www
2025-11-22 05:19:53 (103868): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-22 05:19:53 (103868): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-22 05:19:54 (103868): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-22 05:19:54 (103868): Guest Log:  *** Starting ATLAS job. (PandaID=6894257437 taskID=47533967) ***
2025-11-22 06:59:26 (103868): Status Report: Elapsed Time: '6000.000000'
2025-11-22 06:59:26 (103868): Status Report: CPU Time: '4868.015625'
2025-11-22 08:39:31 (103868): Status Report: Elapsed Time: '12000.000000'
2025-11-22 08:39:31 (103868): Status Report: CPU Time: '10326.484375'
2025-11-22 10:19:36 (103868): Status Report: Elapsed Time: '18000.000000'
2025-11-22 10:19:36 (103868): Status Report: CPU Time: '15760.093750'
2025-11-22 11:27:52 (103868): VM state change detected. (old = 'running', new = 'paused')
2025-11-22 11:27:57 (103868): VM state change detected. (old = 'paused', new = 'running')
2025-11-22 12:00:02 (103868): Status Report: Elapsed Time: '24000.000000'
2025-11-22 12:00:02 (103868): Status Report: CPU Time: '20331.953125'
2025-11-22 13:40:07 (103868): Status Report: Elapsed Time: '30000.000000'
2025-11-22 13:40:07 (103868): Status Report: CPU Time: '23976.890625'
2025-11-22 14:35:41 (103868): VM state change detected. (old = 'running', new = 'paused')
2025-11-22 14:36:01 (103868): VM state change detected. (old = 'paused', new = 'running')
2025-11-22 14:57:34 (103868): VM state change detected. (old = 'running', new = 'paused')
2025-11-22 14:57:54 (103868): VM state change detected. (old = 'paused', new = 'running')
2025-11-22 15:20:54 (103868): Status Report: Elapsed Time: '36000.000000'
2025-11-22 15:20:54 (103868): Status Report: CPU Time: '28823.437500'
2025-11-22 15:31:59 (103868): Guest Log:  *** Job finished ***
2025-11-22 15:31:59 (103868): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:30:51,181 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:30:51,181 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:11,828 | INFO     | [monitor] cgroup control has ended
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:12,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139962377082688)>', '<ExcThread(monitor, started 139961625990912)>']
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:13,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:13,824 | INFO     | [monitor] control thread has ended
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:17,960 | INFO     | all workflow threads have been joined
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:17,960 | INFO     | end of generic workflow (traces error code: 0)
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:17,960 | INFO     | traces error code: 0
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:17,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,053 [wrapper] ==== pilot stdout END ====
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,057 [wrapper] ==== wrapper stdout RESUME ====
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,061 [wrapper] pilotpid: 6098
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,065 [wrapper] Pilot exit status: 0
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,080 [wrapper] pandaids: 6894257437
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,110 [wrapper] cleanup supervisor_pilot 17464 6099
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,116 [wrapper] Test setup, not cleaning
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,120 [wrapper] apfmon messages muted
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,124 [wrapper] ==== wrapper stdout END ====
2025-11-22 15:31:59 (103868): Guest Log: 2025-11-22 23:31:18,128 [wrapper] ==== wrapper stderr END ====
2025-11-22 15:31:59 (103868): Guest Log:  *** Error codes and diagnostics ***
2025-11-22 15:31:59 (103868): Guest Log:     "exeErrorCode": 0,
2025-11-22 15:31:59 (103868): Guest Log:     "exeErrorDiag": "",
2025-11-22 15:31:59 (103868): Guest Log:     "pilotErrorCode": 0,
2025-11-22 15:31:59 (103868): Guest Log:     "pilotErrorDiag": "",
2025-11-22 15:31:59 (103868): Guest Log:  *** Listing of results directory ***
2025-11-22 15:31:59 (103868): Guest Log: total 907064
2025-11-22 15:31:59 (103868): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 03:09 pilot3.tar.gz
2025-11-22 15:31:59 (103868): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 03:11 queuedata.json
2025-11-22 15:31:59 (103868): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 03:11 runpilot2-wrapper.sh
2025-11-22 15:31:59 (103868): Guest Log: -rwxr-xr-x. 1 atlas atlas      9109 Nov 22 13:19 init_data.xml
2025-11-22 15:31:59 (103868): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Nov 22 13:19 input.tar.gz
2025-11-22 15:31:59 (103868): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 22 13:19 start_atlas.sh
2025-11-22 15:31:59 (103868): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 22 13:19 EVNT.47493127._002153.pool.root.1 -> /data/./ATLAS.root_0
2025-11-22 15:31:59 (103868): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 22 13:19 pandaJob.out
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas    989768 Nov 22 13:21 agis_schedconf.cvmfs.json
2025-11-22 15:31:59 (103868): Guest Log: drwx------. 5 atlas atlas      4096 Nov 22 13:21 pilot3
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas 911813088 Nov 22 23:29 HITS.47533967._001244.pool.root.1
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 22 23:29 memory_monitor_summary.json
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 22 23:30 agis_ddmendpoints.agis.ALL.json
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas   1857876 Nov 22 23:30 log.47533967._001244.job.log.tgz.1
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas        95 Nov 22 23:30 pilot_heartbeat.json
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas      8662 Nov 22 23:30 heartbeat.json
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 22 23:31 pilotlog.txt
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas   4723894 Nov 22 23:31 log.47533967._001244.job.log.1
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas       353 Nov 22 23:31 output.list
2025-11-22 15:31:59 (103868): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 22 23:31 runtime_log
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas   6604800 Nov 22 23:31 result.tar.gz
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas       664 Nov 22 23:31 rwJMDmTjWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIwIKDmpV2C1n.diag
2025-11-22 15:31:59 (103868): Guest Log: -rw-r--r--. 1 atlas atlas      8756 Nov 22 23:31 runtime_log.err
2025-11-22 15:31:59 (103868): Guest Log: Looking for outputfile HITS.47533967._001244.pool.root.1
2025-11-22 15:31:59 (103868): Guest Log: HITS file was successfully produced
2025-11-22 15:31:59 (103868): Guest Log: -rw-------. 1 atlas atlas 911813088 Nov 22 23:29 /home/atlas/RunAtlas/HITS.47533967._001244.pool.root.1
2025-11-22 15:32:05 (103868): Guest Log: Successfully finished the ATLAS job!
2025-11-22 15:32:05 (103868): Guest Log: Copying the results back to the shared directory!
2025-11-22 15:32:05 (103868): Guest Log:  *** Contents of shared directory: ***
2025-11-22 15:32:05 (103868): Guest Log: total 1293436
2025-11-22 15:32:05 (103868): Guest Log: -rwxrwxrwx. 1 root root 405430281 Nov 22 13:19 ATLAS.root_0
2025-11-22 15:32:05 (103868): Guest Log: -rwxrwxrwx. 1 root root 911813088 Nov 22  2025 HITS.pool.root.1
2025-11-22 15:32:05 (103868): Guest Log: -rwxrwxrwx. 1 root root      9109 Nov 22 13:19 init_data.xml
2025-11-22 15:32:05 (103868): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 21 18:04 input.tar.gz
2025-11-22 15:32:05 (103868): Guest Log: -rwxrwxrwx. 1 root root   6604800 Nov 22  2025 result.tar.gz
2025-11-22 15:32:05 (103868): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 18:04 start_atlas.sh
2025-11-22 15:32:05 (103868): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-22 15:32:05 (103868): VM Completion File Detected.
2025-11-22 15:32:05 (103868): Powering off VM.
2025-11-22 15:32:05 (103868): Successfully stopped VM.
2025-11-22 15:32:05 (103868): Deregistering VM. (boinc_eea96269d4ab8375, slot#2)
2025-11-22 15:32:05 (103868): Removing network bandwidth throttle group from VM.
2025-11-22 15:32:06 (103868): Removing VM from VirtualBox.
2025-11-22 15:32:11 (103868): called boinc_finish(0)

</stderr_txt>
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