Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 08:21:40 (15700): vboxwrapper version 26210
2025-11-23 08:21:40 (15700): BOINC client version: 8.0.2
2025-11-23 08:21:41 (15700): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-11-23 08:21:41 (15700): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 08:21:42 (15700): Create VM. (boinc_154998e9840edc21, slot#12)
2025-11-23 08:21:42 (15700): Setting Memory Size for VM. (4800MB)
2025-11-23 08:21:42 (15700): Setting CPU Count for VM. (8)
2025-11-23 08:21:43 (15700): Setting Chipset Options for VM.
2025-11-23 08:21:43 (15700): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 08:21:43 (15700): Setting Boot Options for VM.
2025-11-23 08:21:44 (15700): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 08:21:44 (15700): Enabling VM Network Access.
2025-11-23 08:21:44 (15700): Disabling USB Support for VM.
2025-11-23 08:21:45 (15700): Disabling COM Port Support for VM.
2025-11-23 08:21:45 (15700): Disabling LPT Port Support for VM.
2025-11-23 08:21:45 (15700): Disabling Audio Support for VM.
2025-11-23 08:21:45 (15700): Disabling Clipboard Support for VM.
2025-11-23 08:21:46 (15700): Disabling Drag and Drop Support for VM.
2025-11-23 08:21:46 (15700): Adding storage controller(s) to VM.
2025-11-23 08:21:46 (15700): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 08:21:48 (15700): Adding VirtualBox Guest Additions to VM.
2025-11-23 08:21:48 (15700): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 08:21:49 (15700): forwarding host port 52120 to guest port 80
2025-11-23 08:21:49 (15700): Enabling remote desktop for VM.
2025-11-23 08:21:49 (15700): Required extension pack not installed, remote desktop not enabled.
2025-11-23 08:21:49 (15700): Enabling shared directory for VM.
2025-11-23 08:21:50 (15700): Starting VM using VBoxManage interface. (boinc_154998e9840edc21, slot#12)
2025-11-23 08:21:56 (15700): Successfully started VM. (PID = '6912')
2025-11-23 08:21:56 (15700): Reporting VM Process ID to BOINC.
2025-11-23 08:21:56 (15700): Guest Log: BIOS: VirtualBox 7.2.2
2025-11-23 08:21:56 (15700): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 08:21:56 (15700): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 08:21:56 (15700): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 08:21:56 (15700): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 08:21:56 (15700): Detected: Web Application Enabled (http://localhost:52120)
2025-11-23 08:21:56 (15700): Preference change detected
2025-11-23 08:21:56 (15700): Setting CPU throttle for VM. (100%)
2025-11-23 08:21:56 (15700): Setting network throttle for VM. (1536KB)
2025-11-23 08:21:57 (15700): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 08:21:58 (15700): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 08:21:58 (15700): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 08:22:03 (15700): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 08:22:03 (15700): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 08:22:03 (15700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 08:22:15 (15700): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 08:22:15 (15700): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 08:22:29 (15700): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.000181 main     Log opened 2025-11-23T08:22:27.512422000Z
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.000279 main     OS Product: Linux
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.000300 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.000315 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.000330 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.000331 main     Process ID: 1372
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.000331 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 08:22:29 (15700): Guest Log: 00:00:00.001650 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 08:22:30 (15700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 08:22:30 (15700): Guest Log: [INFO] Mounting shared directory
2025-11-23 08:22:30 (15700): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 08:22:39 (15700): Guest Log: 00:00:10.035313 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 361 568 000ns (GuestNow=1 763 878 959 154 969 000 ns GuestLast=1 763 886 147 516 537 000 ns fSetTimeLastLoop=true )
2025-11-23 08:22:59 (15700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 08:22:59 (15700): Guest Log: [INFO] Detected branch: prod
2025-11-23 08:22:59 (15700): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 08:22:59 (15700): Guest Log: Copying input files
2025-11-23 08:23:03 (15700): Guest Log: Copied input files into RunAtlas.
2025-11-23 08:23:03 (15700): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 08:23:03 (15700): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 08:23:03 (15700): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 08:23:03 (15700): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 08:23:12 (15700): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 08:23:13 (15700): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 08:23:13 (15700): Guest Log: 2.6.3.0 1657 0 30160 153199 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 08:23:21 (15700): Guest Log: copied the webapp to /var/www
2025-11-23 08:23:21 (15700): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-23 08:23:21 (15700): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-23 08:23:22 (15700): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 08:23:22 (15700): Guest Log:  *** Starting ATLAS job. (PandaID=6894257795 taskID=47533967) ***
2025-11-23 10:02:00 (15700): Status Report: Elapsed Time: '6000.000000'
2025-11-23 10:02:00 (15700): Status Report: CPU Time: '41997.796875'
2025-11-23 11:00:03 (15700): VM state change detected. (old = 'running', new = 'paused')
2025-11-24 00:00:01 (15700): Preference change detected
2025-11-24 00:00:01 (15700): Setting CPU throttle for VM. (100%)
2025-11-24 00:00:02 (15700): Setting network throttle for VM. (1536KB)
2025-11-24 00:00:02 (15700): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-24 00:00:02 (15700): VM state change detected. (old = 'paused', new = 'running')
2025-11-24 00:00:10 (15700): Guest Log: 02:37:42.417210 timesync vgsvcTimeSyncWorker: Radical host time change: 46 809 102 000 000ns (HostNow=1 763 935 210 611 000 000 ns HostLast=1 763 888 401 509 000 000 ns)
2025-11-24 00:00:21 (15700): Guest Log: 02:37:52.419336 timesync vgsvcTimeSyncWorker: Radical guest time change: 46 809 125 547 000ns (GuestNow=1 763 935 220 637 535 000 ns GuestLast=1 763 888 411 511 988 000 ns fSetTimeLastLoop=true )
2025-11-24 00:42:05 (15700): Status Report: Elapsed Time: '12000.000000'
2025-11-24 00:42:05 (15700): Status Report: CPU Time: '89394.000000'
2025-11-24 02:22:09 (15700): Status Report: Elapsed Time: '18000.000000'
2025-11-24 02:22:09 (15700): Status Report: CPU Time: '136822.609375'
2025-11-24 03:54:14 (15700): Guest Log:  *** Job finished ***
2025-11-24 03:54:14 (15700): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:53:48,906 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:53:48,906 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:04,178 | INFO     | [monitor] cgroup control has ended
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:05,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466395248448)>', '<ExcThread(monitor, started 140465789708032)>']
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:06,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:06,161 | INFO     | [monitor] control thread has ended
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:10,865 | INFO     | all workflow threads have been joined
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:10,866 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:10,866 | INFO     | traces error code: 0
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:10,867 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,142 [wrapper] ==== pilot stdout END ====
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,176 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,194 [wrapper] pilotpid: 6100
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,210 [wrapper] Pilot exit status: 0
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,261 [wrapper] pandaids: 6894257795
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,377 [wrapper] cleanup supervisor_pilot 29258 6101
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,395 [wrapper] Test setup, not cleaning
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,413 [wrapper] apfmon messages muted
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,430 [wrapper] ==== wrapper stdout END ====
2025-11-24 03:54:14 (15700): Guest Log: 2025-11-24 01:54:11,448 [wrapper] ==== wrapper stderr END ====
2025-11-24 03:54:14 (15700): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 03:54:14 (15700): Guest Log:     "exeErrorCode": 0,
2025-11-24 03:54:14 (15700): Guest Log:     "exeErrorDiag": "",
2025-11-24 03:54:14 (15700): Guest Log:     "pilotErrorCode": 0,
2025-11-24 03:54:14 (15700): Guest Log:     "pilotErrorDiag": "",
2025-11-24 03:54:14 (15700): Guest Log:  *** Listing of results directory ***
2025-11-24 03:54:14 (15700): Guest Log: total 914740
2025-11-24 03:54:14 (15700): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 03:09 pilot3.tar.gz
2025-11-24 03:54:14 (15700): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 03:19 queuedata.json
2025-11-24 03:54:14 (15700): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 03:20 runpilot2-wrapper.sh
2025-11-24 03:54:14 (15700): Guest Log: -rwxr-xr-x. 1 atlas atlas      9407 Nov 23 06:23 init_data.xml
2025-11-24 03:54:14 (15700): Guest Log: -rwxr-xr-x. 1 atlas atlas    590103 Nov 23 06:23 input.tar.gz
2025-11-24 03:54:14 (15700): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 23 06:23 start_atlas.sh
2025-11-24 03:54:14 (15700): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 06:23 EVNT.47493127._002158.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 03:54:14 (15700): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 23 06:23 pandaJob.out
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas    989784 Nov 23 06:24 agis_schedconf.cvmfs.json
2025-11-24 03:54:14 (15700): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 06:24 pilot3
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas 923315169 Nov 24 01:52 HITS.47533967._001299.pool.root.1
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas      1043 Nov 24 01:52 memory_monitor_summary.json
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 24 01:52 agis_ddmendpoints.agis.ALL.json
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas   1707642 Nov 24 01:52 log.47533967._001299.job.log.tgz.1
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas      8665 Nov 24 01:53 heartbeat.json
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas        98 Nov 24 01:53 pilot_heartbeat.json
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 24 01:54 pilotlog.txt
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas   3056908 Nov 24 01:54 log.47533967._001299.job.log.1
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 01:54 output.list
2025-11-24 03:54:14 (15700): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 01:54 runtime_log
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas   4782080 Nov 24 01:54 result.tar.gz
2025-11-24 03:54:14 (15700): Guest Log: -rw-r--r--. 1 atlas atlas      8726 Nov 24 01:54 runtime_log.err
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas       652 Nov 24 01:54 4eKKDmXsWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7wIKDmZ9jEIm.diag
2025-11-24 03:54:14 (15700): Guest Log: Looking for outputfile HITS.47533967._001299.pool.root.1
2025-11-24 03:54:14 (15700): Guest Log: HITS file was successfully produced
2025-11-24 03:54:14 (15700): Guest Log: -rw-------. 1 atlas atlas 923315169 Nov 24 01:52 /home/atlas/RunAtlas/HITS.47533967._001299.pool.root.1
2025-11-24 03:54:22 (15700): Guest Log: Successfully finished the ATLAS job!
2025-11-24 03:54:22 (15700): Guest Log: Copying the results back to the shared directory!
2025-11-24 03:54:22 (15700): Guest Log:  *** Contents of shared directory: ***
2025-11-24 03:54:22 (15700): Guest Log: total 1307764
2025-11-24 03:54:22 (15700): Guest Log: -rwxrwxrwx. 1 root root 410427197 Nov 23 06:21 ATLAS.root_0
2025-11-24 03:54:22 (15700): Guest Log: -rwxrwxrwx. 1 root root 923315169 Nov 24 01:54 HITS.pool.root.1
2025-11-24 03:54:22 (15700): Guest Log: -rwxrwxrwx. 1 root root      9407 Nov 23 06:21 init_data.xml
2025-11-24 03:54:22 (15700): Guest Log: -rwxrwxrwx. 1 root root    590103 Nov 21 17:53 input.tar.gz
2025-11-24 03:54:22 (15700): Guest Log: -rwxrwxrwx. 1 root root   4782080 Nov 24 01:54 result.tar.gz
2025-11-24 03:54:22 (15700): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 17:53 start_atlas.sh
2025-11-24 03:54:22 (15700): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 03:54:22 (15700): VM Completion File Detected.
2025-11-24 03:54:22 (15700): Powering off VM.
2025-11-24 03:54:24 (15700): Successfully stopped VM.
2025-11-24 03:54:24 (15700): Deregistering VM. (boinc_154998e9840edc21, slot#12)
2025-11-24 03:54:24 (15700): Removing network bandwidth throttle group from VM.
2025-11-24 03:54:24 (15700): Removing VM from VirtualBox.
2025-11-24 03:54:29 (15700): called boinc_finish(0)

</stderr_txt>
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