Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 15:36:55 (13920): vboxwrapper version 26210
2025-11-26 15:36:55 (13920): BOINC client version: 8.0.2
2025-11-26 15:36:55 (13920): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-11-26 15:36:56 (13920): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 15:36:56 (13920): Create VM. (boinc_567c6ed8c70affbc, slot#6)
2025-11-26 15:36:57 (13920): Setting Memory Size for VM. (4800MB)
2025-11-26 15:36:57 (13920): Setting CPU Count for VM. (8)
2025-11-26 15:36:57 (13920): Setting Chipset Options for VM.
2025-11-26 15:36:57 (13920): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 15:36:58 (13920): Setting Boot Options for VM.
2025-11-26 15:36:58 (13920): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 15:36:58 (13920): Enabling VM Network Access.
2025-11-26 15:36:59 (13920): Disabling USB Support for VM.
2025-11-26 15:36:59 (13920): Disabling COM Port Support for VM.
2025-11-26 15:36:59 (13920): Disabling LPT Port Support for VM.
2025-11-26 15:36:59 (13920): Disabling Audio Support for VM.
2025-11-26 15:37:00 (13920): Disabling Clipboard Support for VM.
2025-11-26 15:37:00 (13920): Disabling Drag and Drop Support for VM.
2025-11-26 15:37:00 (13920): Adding storage controller(s) to VM.
2025-11-26 15:37:01 (13920): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 15:37:03 (13920): Adding VirtualBox Guest Additions to VM.
2025-11-26 15:37:03 (13920): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 15:37:03 (13920): forwarding host port 58616 to guest port 80
2025-11-26 15:37:03 (13920): Enabling remote desktop for VM.
2025-11-26 15:37:04 (13920): Required extension pack not installed, remote desktop not enabled.
2025-11-26 15:37:04 (13920): Enabling shared directory for VM.
2025-11-26 15:37:04 (13920): Starting VM using VBoxManage interface. (boinc_567c6ed8c70affbc, slot#6)
2025-11-26 15:37:11 (13920): Successfully started VM. (PID = '17052')
2025-11-26 15:37:11 (13920): Reporting VM Process ID to BOINC.
2025-11-26 15:37:11 (13920): Guest Log: BIOS: VirtualBox 7.2.2
2025-11-26 15:37:11 (13920): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 15:37:11 (13920): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 15:37:11 (13920): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 15:37:11 (13920): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 15:37:11 (13920): Detected: Web Application Enabled (http://localhost:58616)
2025-11-26 15:37:11 (13920): Preference change detected
2025-11-26 15:37:11 (13920): Setting CPU throttle for VM. (100%)
2025-11-26 15:37:11 (13920): Setting network throttle for VM. (1536KB)
2025-11-26 15:37:11 (13920): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 15:37:13 (13920): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 15:37:13 (13920): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 15:37:16 (13920): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 15:37:16 (13920): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 15:37:16 (13920): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 15:37:23 (13920): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 15:37:23 (13920): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 15:37:35 (13920): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.000472 main     Log opened 2025-11-26T15:37:33.813451000Z
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.000681 main     OS Product: Linux
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.000746 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.000796 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.000845 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.000846 main     Process ID: 1378
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.000848 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 15:37:35 (13920): Guest Log: 00:00:00.003262 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 15:37:35 (13920): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 15:37:35 (13920): Guest Log: [INFO] Mounting shared directory
2025-11-26 15:37:35 (13920): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 15:37:41 (13920): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 15:37:41 (13920): Guest Log: [INFO] Detected branch: prod
2025-11-26 15:37:42 (13920): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 15:37:42 (13920): Guest Log: Copying input files
2025-11-26 15:37:45 (13920): Guest Log: 00:00:10.104213 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 157 769 000ns (GuestNow=1 764 164 264 662 712 000 ns GuestLast=1 764 171 453 820 481 000 ns fSetTimeLastLoop=true )
2025-11-26 15:37:45 (13920): Guest Log: Copied input files into RunAtlas.
2025-11-26 15:37:45 (13920): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 15:37:45 (13920): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 15:37:45 (13920): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 15:37:45 (13920): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 15:38:17 (13920): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 15:38:17 (13920): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 15:38:17 (13920): Guest Log: 2.6.3.0 1656 0 30128 153323 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 15:38:20 (13920): Guest Log: copied the webapp to /var/www
2025-11-26 15:38:20 (13920): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-26 15:38:20 (13920): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-26 15:38:20 (13920): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 15:38:21 (13920): Guest Log:  *** Starting ATLAS job. (PandaID=6894257803 taskID=47533967) ***
2025-11-26 17:17:16 (13920): Status Report: Elapsed Time: '6000.000000'
2025-11-26 17:17:16 (13920): Status Report: CPU Time: '44157.375000'
2025-11-26 18:57:20 (13920): Status Report: Elapsed Time: '12000.000000'
2025-11-26 18:57:20 (13920): Status Report: CPU Time: '91876.828125'
2025-11-26 20:37:25 (13920): Status Report: Elapsed Time: '18000.000000'
2025-11-26 20:37:25 (13920): Status Report: CPU Time: '139657.281250'
2025-11-26 20:50:39 (13920): Guest Log:  *** Job finished ***
2025-11-26 20:50:39 (13920): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:16,457 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:16,457 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:30,537 | INFO     | [monitor] cgroup control has ended
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:30,843 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016982918976)>', '<ExcThread(monitor, started 140016328107776)>']
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:31,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:31,740 | INFO     | [monitor] control thread has ended
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:35,861 | INFO     | all workflow threads have been joined
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:35,862 | INFO     | end of generic workflow (traces error code: 0)
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:35,863 | INFO     | traces error code: 0
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:35,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,137 [wrapper] ==== pilot stdout END ====
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,148 [wrapper] ==== wrapper stdout RESUME ====
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,158 [wrapper] pilotpid: 6093
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,171 [wrapper] Pilot exit status: 0
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,222 [wrapper] pandaids: 6894257803
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,296 [wrapper] cleanup supervisor_pilot 20414 6094
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,310 [wrapper] Test setup, not cleaning
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,327 [wrapper] apfmon messages muted
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,339 [wrapper] ==== wrapper stdout END ====
2025-11-26 20:50:39 (13920): Guest Log: 2025-11-26 18:50:36,350 [wrapper] ==== wrapper stderr END ====
2025-11-26 20:50:39 (13920): Guest Log:  *** Error codes and diagnostics ***
2025-11-26 20:50:39 (13920): Guest Log:     "exeErrorCode": 0,
2025-11-26 20:50:39 (13920): Guest Log:     "exeErrorDiag": "",
2025-11-26 20:50:39 (13920): Guest Log:     "pilotErrorCode": 0,
2025-11-26 20:50:39 (13920): Guest Log:     "pilotErrorDiag": "",
2025-11-26 20:50:39 (13920): Guest Log:  *** Listing of results directory ***
2025-11-26 20:50:39 (13920): Guest Log: total 913644
2025-11-26 20:50:39 (13920): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 03:09 pilot3.tar.gz
2025-11-26 20:50:39 (13920): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 03:23 runpilot2-wrapper.sh
2025-11-26 20:50:39 (13920): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 03:23 queuedata.json
2025-11-26 20:50:39 (13920): Guest Log: -rwxr-xr-x. 1 atlas atlas      9125 Nov 26 13:37 init_data.xml
2025-11-26 20:50:39 (13920): Guest Log: -rwxr-xr-x. 1 atlas atlas    590103 Nov 26 13:37 input.tar.gz
2025-11-26 20:50:39 (13920): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 13:37 start_atlas.sh
2025-11-26 20:50:39 (13920): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 13:37 EVNT.47493127._002159.pool.root.1 -> /data/./ATLAS.root_0
2025-11-26 20:50:39 (13920): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 26 13:38 pandaJob.out
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas    991830 Nov 26 13:39 agis_schedconf.cvmfs.json
2025-11-26 20:50:39 (13920): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 13:39 pilot3
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas 923488129 Nov 26 18:48 HITS.47533967._001307.pool.root.1
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas      1045 Nov 26 18:49 memory_monitor_summary.json
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 26 18:49 agis_ddmendpoints.agis.ALL.json
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas   1644081 Nov 26 18:49 log.47533967._001307.job.log.tgz.1
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas      8682 Nov 26 18:49 heartbeat.json
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas        95 Nov 26 18:50 pilot_heartbeat.json
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas      4877 Nov 26 18:50 pilotlog.txt
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas   2475315 Nov 26 18:50 log.47533967._001307.job.log.1
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas       353 Nov 26 18:50 output.list
2025-11-26 20:50:39 (13920): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 26 18:50 runtime_log
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas   4136960 Nov 26 18:50 result.tar.gz
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas       652 Nov 26 18:50 Xq1MDmxuWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSxIKDmXz2kvn.diag
2025-11-26 20:50:39 (13920): Guest Log: -rw-r--r--. 1 atlas atlas      8726 Nov 26 18:50 runtime_log.err
2025-11-26 20:50:39 (13920): Guest Log: Looking for outputfile HITS.47533967._001307.pool.root.1
2025-11-26 20:50:39 (13920): Guest Log: HITS file was successfully produced
2025-11-26 20:50:39 (13920): Guest Log: -rw-------. 1 atlas atlas 923488129 Nov 26 18:48 /home/atlas/RunAtlas/HITS.47533967._001307.pool.root.1
2025-11-26 20:50:43 (13920): Guest Log: Successfully finished the ATLAS job!
2025-11-26 20:50:43 (13920): Guest Log: Copying the results back to the shared directory!
2025-11-26 20:50:44 (13920): Guest Log:  *** Contents of shared directory: ***
2025-11-26 20:50:44 (13920): Guest Log: total 1304788
2025-11-26 20:50:44 (13920): Guest Log: -rwxrwxrwx. 1 root root 407852197 Nov 26 13:36 ATLAS.root_0
2025-11-26 20:50:44 (13920): Guest Log: -rwxrwxrwx. 1 root root 923488129 Nov 26 18:50 HITS.pool.root.1
2025-11-26 20:50:44 (13920): Guest Log: -rwxrwxrwx. 1 root root      9125 Nov 26 13:36 init_data.xml
2025-11-26 20:50:44 (13920): Guest Log: -rwxrwxrwx. 1 root root    590103 Nov 21 19:26 input.tar.gz
2025-11-26 20:50:44 (13920): Guest Log: -rwxrwxrwx. 1 root root   4136960 Nov 26 18:50 result.tar.gz
2025-11-26 20:50:44 (13920): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 19:26 start_atlas.sh
2025-11-26 20:50:44 (13920): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-26 20:50:44 (13920): VM Completion File Detected.
2025-11-26 20:50:44 (13920): Powering off VM.
2025-11-26 20:50:45 (13920): Successfully stopped VM.
2025-11-26 20:50:45 (13920): Deregistering VM. (boinc_567c6ed8c70affbc, slot#6)
2025-11-26 20:50:45 (13920): Removing network bandwidth throttle group from VM.
2025-11-26 20:50:45 (13920): Removing VM from VirtualBox.
2025-11-26 20:50:51 (13920): called boinc_finish(0)

</stderr_txt>
]]>

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