Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 13:55:50 (23500): vboxwrapper version 26210
2025-11-27 13:55:50 (23500): BOINC client version: 8.0.2
2025-11-27 13:55:51 (23500): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-11-27 13:55:51 (23500): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 13:55:52 (23500): Create VM. (boinc_5b6bbc5f90832a0e, slot#0)
2025-11-27 13:55:52 (23500): Setting Memory Size for VM. (4800MB)
2025-11-27 13:55:52 (23500): Setting CPU Count for VM. (8)
2025-11-27 13:55:53 (23500): Setting Chipset Options for VM.
2025-11-27 13:55:53 (23500): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 13:55:53 (23500): Setting Boot Options for VM.
2025-11-27 13:55:54 (23500): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 13:55:54 (23500): Enabling VM Network Access.
2025-11-27 13:55:54 (23500): Disabling USB Support for VM.
2025-11-27 13:55:54 (23500): Disabling COM Port Support for VM.
2025-11-27 13:55:55 (23500): Disabling LPT Port Support for VM.
2025-11-27 13:55:55 (23500): Disabling Audio Support for VM.
2025-11-27 13:55:55 (23500): Disabling Clipboard Support for VM.
2025-11-27 13:55:55 (23500): Disabling Drag and Drop Support for VM.
2025-11-27 13:55:56 (23500): Adding storage controller(s) to VM.
2025-11-27 13:55:56 (23500): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 13:55:58 (23500): Adding VirtualBox Guest Additions to VM.
2025-11-27 13:55:58 (23500): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 13:55:58 (23500): forwarding host port 51567 to guest port 80
2025-11-27 13:55:59 (23500): Enabling remote desktop for VM.
2025-11-27 13:55:59 (23500): Required extension pack not installed, remote desktop not enabled.
2025-11-27 13:55:59 (23500): Enabling shared directory for VM.
2025-11-27 13:56:00 (23500): Starting VM using VBoxManage interface. (boinc_5b6bbc5f90832a0e, slot#0)
2025-11-27 13:56:06 (23500): Successfully started VM. (PID = '16232')
2025-11-27 13:56:06 (23500): Reporting VM Process ID to BOINC.
2025-11-27 13:56:06 (23500): Guest Log: BIOS: VirtualBox 7.2.2
2025-11-27 13:56:06 (23500): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 13:56:06 (23500): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 13:56:06 (23500): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 13:56:06 (23500): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 13:56:06 (23500): Detected: Web Application Enabled (http://localhost:51567)
2025-11-27 13:56:06 (23500): Preference change detected
2025-11-27 13:56:06 (23500): Setting CPU throttle for VM. (100%)
2025-11-27 13:56:07 (23500): Setting network throttle for VM. (1536KB)
2025-11-27 13:56:07 (23500): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 13:56:08 (23500): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 13:56:08 (23500): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 13:56:11 (23500): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 13:56:11 (23500): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 13:56:11 (23500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 13:56:19 (23500): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 13:56:19 (23500): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 13:56:31 (23500): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.000395 main     Log opened 2025-11-27T13:56:29.914582000Z
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.000731 main     OS Product: Linux
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.000804 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.000855 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.000905 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.000907 main     Process ID: 1375
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.000909 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 13:56:31 (23500): Guest Log: 00:00:00.002758 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 13:56:32 (23500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 13:56:32 (23500): Guest Log: [INFO] Mounting shared directory
2025-11-27 13:56:32 (23500): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 13:56:36 (23500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 13:56:36 (23500): Guest Log: [INFO] Detected branch: prod
2025-11-27 13:56:36 (23500): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 13:56:36 (23500): Guest Log: Copying input files
2025-11-27 13:56:39 (23500): Guest Log: Copied input files into RunAtlas.
2025-11-27 13:56:39 (23500): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 13:56:39 (23500): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 13:56:39 (23500): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 13:56:39 (23500): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 13:56:42 (23500): Guest Log: 00:00:10.017221 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 986 285 000ns (GuestNow=1 764 244 601 934 013 000 ns GuestLast=1 764 251 789 920 298 000 ns fSetTimeLastLoop=true )
2025-11-27 13:56:49 (23500): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 13:56:50 (23500): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 13:56:50 (23500): Guest Log: 2.6.3.0 1652 0 30172 153362 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 13:56:53 (23500): Guest Log: copied the webapp to /var/www
2025-11-27 13:56:53 (23500): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 13:56:53 (23500): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 13:56:54 (23500): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 13:56:54 (23500): Guest Log:  *** Starting ATLAS job. (PandaID=6894257815 taskID=47533967) ***
2025-11-27 15:36:11 (23500): Status Report: Elapsed Time: '6000.000000'
2025-11-27 15:36:11 (23500): Status Report: CPU Time: '42199.984375'
2025-11-27 17:16:16 (23500): Status Report: Elapsed Time: '12000.000000'
2025-11-27 17:16:16 (23500): Status Report: CPU Time: '89878.515625'
2025-11-27 18:56:21 (23500): Status Report: Elapsed Time: '18000.000000'
2025-11-27 18:56:21 (23500): Status Report: CPU Time: '137588.421875'
2025-11-27 19:17:21 (23500): Guest Log:  *** Job finished ***
2025-11-27 19:17:21 (23500): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:12,439 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:12,440 | INFO     | traces error code: 0
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:12,440 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:15,875 | INFO     | PID=6101 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:15,876 | INFO     | found 0 job(s) in 20 queues
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:15,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:15,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:15,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:15,876 | CRITICAL | thread 'MainThread' is not alive
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:15,876 | INFO     | [monitor] control thread has ended
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,163 [wrapper] ==== pilot stdout END ====
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,175 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,186 [wrapper] pilotpid: 6101
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,198 [wrapper] Pilot exit status: 0
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,254 [wrapper] pandaids: 6894257815
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,313 [wrapper] cleanup supervisor_pilot 23514 6102
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,329 [wrapper] Test setup, not cleaning
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,338 [wrapper] apfmon messages muted
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,347 [wrapper] ==== wrapper stdout END ====
2025-11-27 19:17:21 (23500): Guest Log: 2025-11-27 17:17:16,356 [wrapper] ==== wrapper stderr END ====
2025-11-27 19:17:21 (23500): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 19:17:21 (23500): Guest Log:     "exeErrorCode": 0,
2025-11-27 19:17:21 (23500): Guest Log:     "exeErrorDiag": "",
2025-11-27 19:17:21 (23500): Guest Log:     "pilotErrorCode": 0,
2025-11-27 19:17:21 (23500): Guest Log:     "pilotErrorDiag": "",
2025-11-27 19:17:21 (23500): Guest Log:  *** Listing of results directory ***
2025-11-27 19:17:21 (23500): Guest Log: total 900488
2025-11-27 19:17:21 (23500): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 21 03:09 pilot3.tar.gz
2025-11-27 19:17:21 (23500): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 21 03:23 runpilot2-wrapper.sh
2025-11-27 19:17:21 (23500): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 21 03:23 queuedata.json
2025-11-27 19:17:21 (23500): Guest Log: -rwxr-xr-x. 1 atlas atlas      9125 Nov 27 11:56 init_data.xml
2025-11-27 19:17:21 (23500): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Nov 27 11:56 input.tar.gz
2025-11-27 19:17:21 (23500): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 27 11:56 start_atlas.sh
2025-11-27 19:17:21 (23500): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 11:56 EVNT.47493127._002160.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 19:17:21 (23500): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 27 11:56 pandaJob.out
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas    991572 Nov 27 11:58 agis_schedconf.cvmfs.json
2025-11-27 19:17:21 (23500): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 11:58 pilot3
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas 909796247 Nov 27 17:15 HITS.47533967._001319.pool.root.1
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 17:16 pilot_heartbeat.json
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas      1044 Nov 27 17:16 memory_monitor_summary.json
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 17:16 agis_ddmendpoints.agis.ALL.json
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas   1656393 Nov 27 17:16 log.47533967._001319.job.log.tgz.1
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas      8664 Nov 27 17:16 heartbeat.json
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas       814 Nov 27 17:17 pilotlog.txt
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas   2570799 Nov 27 17:17 log.47533967._001319.job.log.1
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 17:17 output.list
2025-11-27 19:17:21 (23500): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 17:17 runtime_log
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas   4249600 Nov 27 17:17 result.tar.gz
2025-11-27 19:17:21 (23500): Guest Log: -rw-r--r--. 1 atlas atlas      8726 Nov 27 17:17 runtime_log.err
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas       652 Nov 27 17:17 HvFNDmxuWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdxIKDmnO5Lbm.diag
2025-11-27 19:17:21 (23500): Guest Log: Looking for outputfile HITS.47533967._001319.pool.root.1
2025-11-27 19:17:21 (23500): Guest Log: HITS file was successfully produced
2025-11-27 19:17:21 (23500): Guest Log: -rw-------. 1 atlas atlas 909796247 Nov 27 17:15 /home/atlas/RunAtlas/HITS.47533967._001319.pool.root.1
2025-11-27 19:17:25 (23500): Guest Log: Successfully finished the ATLAS job!
2025-11-27 19:17:25 (23500): Guest Log: Copying the results back to the shared directory!
2025-11-27 19:17:25 (23500): Guest Log:  *** Contents of shared directory: ***
2025-11-27 19:17:25 (23500): Guest Log: total 1293768
2025-11-27 19:17:25 (23500): Guest Log: -rwxrwxrwx. 1 root root 410141181 Nov 27 11:55 ATLAS.root_0
2025-11-27 19:17:25 (23500): Guest Log: -rwxrwxrwx. 1 root root 909796247 Nov 27 17:17 HITS.pool.root.1
2025-11-27 19:17:25 (23500): Guest Log: -rwxrwxrwx. 1 root root      9125 Nov 27 11:55 init_data.xml
2025-11-27 19:17:25 (23500): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 21 19:32 input.tar.gz
2025-11-27 19:17:25 (23500): Guest Log: -rwxrwxrwx. 1 root root   4249600 Nov 27 17:17 result.tar.gz
2025-11-27 19:17:25 (23500): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 19:32 start_atlas.sh
2025-11-27 19:17:25 (23500): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 19:17:25 (23500): VM Completion File Detected.
2025-11-27 19:17:25 (23500): Powering off VM.
2025-11-27 19:17:26 (23500): Successfully stopped VM.
2025-11-27 19:17:26 (23500): Deregistering VM. (boinc_5b6bbc5f90832a0e, slot#0)
2025-11-27 19:17:26 (23500): Removing network bandwidth throttle group from VM.
2025-11-27 19:17:27 (23500): Removing VM from VirtualBox.
2025-11-27 19:17:32 (23500): called boinc_finish(0)

</stderr_txt>
]]>

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