Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 14:33:10 (68624): vboxwrapper version 26210
2025-11-23 14:33:10 (68624): BOINC client version: 8.0.2
2025-11-23 14:33:10 (68624): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-23 14:33:11 (68624): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 14:33:11 (68624): Create VM. (boinc_6ab67fa46ad47b66, slot#0)
2025-11-23 14:33:11 (68624): Setting Memory Size for VM. (4800MB)
2025-11-23 14:33:12 (68624): Setting CPU Count for VM. (8)
2025-11-23 14:33:12 (68624): Setting Chipset Options for VM.
2025-11-23 14:33:12 (68624): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 14:33:12 (68624): Setting Boot Options for VM.
2025-11-23 14:33:13 (68624): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 14:33:13 (68624): Enabling VM Network Access.
2025-11-23 14:33:13 (68624): Disabling USB Support for VM.
2025-11-23 14:33:14 (68624): Disabling COM Port Support for VM.
2025-11-23 14:33:14 (68624): Disabling LPT Port Support for VM.
2025-11-23 14:33:14 (68624): Disabling Audio Support for VM.
2025-11-23 14:33:14 (68624): Disabling Clipboard Support for VM.
2025-11-23 14:33:15 (68624): Disabling Drag and Drop Support for VM.
2025-11-23 14:33:15 (68624): Adding storage controller(s) to VM.
2025-11-23 14:33:15 (68624): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 14:33:16 (68624): Adding VirtualBox Guest Additions to VM.
2025-11-23 14:33:16 (68624): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 14:33:16 (68624): forwarding host port 64368 to guest port 80
2025-11-23 14:33:17 (68624): Enabling remote desktop for VM.
2025-11-23 14:33:17 (68624): Required extension pack not installed, remote desktop not enabled.
2025-11-23 14:33:17 (68624): Enabling shared directory for VM.
2025-11-23 14:33:17 (68624): Starting VM using VBoxManage interface. (boinc_6ab67fa46ad47b66, slot#0)
2025-11-23 14:33:23 (68624): Successfully started VM. (PID = '57408')
2025-11-23 14:33:23 (68624): Reporting VM Process ID to BOINC.
2025-11-23 14:33:23 (68624): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-23 14:33:23 (68624): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 14:33:23 (68624): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 14:33:23 (68624): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 14:33:23 (68624): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 14:33:23 (68624): Detected: Web Application Enabled (http://localhost:64368)
2025-11-23 14:33:23 (68624): Preference change detected
2025-11-23 14:33:23 (68624): Setting CPU throttle for VM. (50%)
2025-11-23 14:33:23 (68624): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 14:33:25 (68624): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 14:33:25 (68624): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 14:33:28 (68624): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 14:33:28 (68624): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 14:33:28 (68624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 14:33:33 (68624): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 14:33:33 (68624): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 14:33:37 (68624): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.000058 main     Log opened 2025-11-23T14:33:35.852986000Z
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.000116 main     OS Product: Linux
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.000218 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.000231 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.000242 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.000242 main     Process ID: 1372
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.000243 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 14:33:37 (68624): Guest Log: 00:00:00.001828 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 14:33:37 (68624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 14:33:37 (68624): Guest Log: [INFO] Mounting shared directory
2025-11-23 14:33:37 (68624): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 14:33:41 (68624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 14:33:41 (68624): Guest Log: [INFO] Detected branch: prod
2025-11-23 14:33:41 (68624): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 14:33:41 (68624): Guest Log: Copying input files
2025-11-23 14:33:43 (68624): Guest Log: Copied input files into RunAtlas.
2025-11-23 14:33:43 (68624): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 14:33:43 (68624): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 14:33:43 (68624): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 14:33:43 (68624): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 14:33:47 (68624): Guest Log: 00:00:10.003548 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 279 420 000ns (GuestNow=1 763 926 427 134 927 000 ns GuestLast=1 763 908 415 855 507 000 ns fSetTimeLastLoop=true )
2025-11-23 14:33:51 (68624): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 14:33:51 (68624): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 14:33:51 (68624): Guest Log: 2.6.3.0 1650 0 30192 153219 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 14:33:51 (68624): Guest Log: copied the webapp to /var/www
2025-11-23 14:33:52 (68624): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-23 14:33:52 (68624): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-23 14:33:52 (68624): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 14:33:52 (68624): Guest Log:  *** Starting ATLAS job. (PandaID=6894253994 taskID=47533967) ***
2025-11-23 14:34:13 (68624): VM state change detected. (old = 'running', new = 'paused')
2025-11-23 14:34:33 (68624): VM state change detected. (old = 'paused', new = 'running')
2025-11-23 14:47:52 (68624): Guest Log:  *** Job finished ***
2025-11-23 14:47:52 (68624): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:06,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:06,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:25,372 | INFO     | [monitor] cgroup control has ended
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:25,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859262900032)>', '<ExcThread(monitor, started 139858529990400)>']
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:25,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:25,500 | INFO     | [monitor] control thread has ended
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:30,380 | INFO     | all workflow threads have been joined
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:30,380 | INFO     | end of generic workflow (traces error code: 0)
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:30,380 | INFO     | traces error code: 0
2025-11-23 14:47:52 (68624): Guest Log: 2025-11-23 19:47:30,380 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,437 [wrapper] ==== pilot stdout END ====
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,440 [wrapper] ==== wrapper stdout RESUME ====
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,442 [wrapper] pilotpid: 6082
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,444 [wrapper] Pilot exit status: 0
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,453 [wrapper] pandaids: 6894253994
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,466 [wrapper] cleanup supervisor_pilot  6088 6083
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,468 [wrapper] Test setup, not cleaning
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,470 [wrapper] apfmon messages muted
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,472 [wrapper] ==== wrapper stdout END ====
2025-11-23 14:47:53 (68624): Guest Log: 2025-11-23 19:47:30,474 [wrapper] ==== wrapper stderr END ====
2025-11-23 14:47:53 (68624): Guest Log:  *** Error codes and diagnostics ***
2025-11-23 14:47:53 (68624): Guest Log:     "exeErrorCode": 65,
2025-11-23 14:47:53 (68624): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 2; Run: 284500; Evt: 138070012; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2025-11-23 14:47:53 (68624): Guest Log:     "pilotErrorCode": 1305,
2025-11-23 14:47:53 (68624): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 2; Run: 284500; Evt: 138070012; Current algorit",
2025-11-23 14:47:53 (68624): Guest Log:  *** Listing of results directory ***
2025-11-23 14:47:53 (68624): Guest Log: total 5104
2025-11-23 14:47:53 (68624): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 21 02:10 pilot3.tar.gz
2025-11-23 14:47:53 (68624): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 21 02:45 runpilot2-wrapper.sh
2025-11-23 14:47:53 (68624): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 21 02:45 queuedata.json
2025-11-23 14:47:53 (68624): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Nov 23 19:33 init_data.xml
2025-11-23 14:47:53 (68624): Guest Log: -rwxr-xr-x. 1 atlas atlas  590101 Nov 23 19:33 input.tar.gz
2025-11-23 14:47:53 (68624): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Nov 23 19:33 start_atlas.sh
2025-11-23 14:47:53 (68624): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 23 19:33 EVNT.47493127._002133.pool.root.1 -> /data/./ATLAS.root_0
2025-11-23 14:47:53 (68624): Guest Log: -rw-r--r--. 1 atlas atlas    2783 Nov 23 19:33 pandaJob.out
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas  989786 Nov 23 19:34 agis_schedconf.cvmfs.json
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas 1526164 Nov 23 19:34 agis_ddmendpoints.agis.ALL.json
2025-11-23 14:47:53 (68624): Guest Log: drwx------. 5 atlas atlas    4096 Nov 23 19:34 pilot3
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas    1021 Nov 23 19:44 memory_monitor_summary.json
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas  531168 Nov 23 19:44 log.47533967._001041.job.log.tgz.1
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas      95 Nov 23 19:46 pilot_heartbeat.json
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas    9644 Nov 23 19:46 heartbeat.json
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas    4805 Nov 23 19:47 pilotlog.txt
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas  158370 Nov 23 19:47 log.47533967._001041.job.log.1
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas     186 Nov 23 19:47 output.list
2025-11-23 14:47:53 (68624): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 23 19:47 runtime_log
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas  706560 Nov 23 19:47 result.tar.gz
2025-11-23 14:47:53 (68624): Guest Log: -rw-r--r--. 1 atlas atlas    8587 Nov 23 19:47 runtime_log.err
2025-11-23 14:47:53 (68624): Guest Log: -rw-------. 1 atlas atlas     643 Nov 23 19:47 0r2MDmcKWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmtIKDmjsAVfm.diag
2025-11-23 14:47:53 (68624): Guest Log: Looking for outputfile HITS.47533967._001041.pool.root.1
2025-11-23 14:47:53 (68624): Guest Log: No HITS file was produced
2025-11-23 14:47:53 (68624): Guest Log: Successfully finished the ATLAS job!
2025-11-23 14:47:53 (68624): Guest Log: Copying the results back to the shared directory!
2025-11-23 14:47:53 (68624): Guest Log:  *** Contents of shared directory: ***
2025-11-23 14:47:53 (68624): Guest Log: total 402056
2025-11-23 14:47:53 (68624): Guest Log: -rwxrwxrwx. 1 root root 410372582 Nov 23 19:33 ATLAS.root_0
2025-11-23 14:47:53 (68624): Guest Log: -rwxrwxrwx. 1 root root      9004 Nov 23 19:33 init_data.xml
2025-11-23 14:47:53 (68624): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 21 17:10 input.tar.gz
2025-11-23 14:47:53 (68624): Guest Log: -rwxrwxrwx. 1 root root    706560 Nov 23  2025 result.tar.gz
2025-11-23 14:47:53 (68624): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 21 17:10 start_atlas.sh
2025-11-23 14:47:53 (68624): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-23 14:47:53 (68624): VM Completion File Detected.
2025-11-23 14:47:53 (68624): Powering off VM.
2025-11-23 14:47:53 (68624): Successfully stopped VM.
2025-11-23 14:47:53 (68624): Deregistering VM. (boinc_6ab67fa46ad47b66, slot#0)
2025-11-23 14:47:53 (68624): Removing network bandwidth throttle group from VM.
2025-11-23 14:47:53 (68624): Removing VM from VirtualBox.
2025-11-23 14:47:59 (68624): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN