Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:38:18 (2470662): wrapper (7.7.26015): starting
10:38:18 (2470662): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 10:38:18] Arguments: --nthreads 4
[2025-11-24 10:38:18] Threads: 4
[2025-11-24 10:38:18] Checking for CVMFS
[2025-11-24 10:38:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:38:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:38:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:38:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:38:18] 2.9.2.0 1682378 5387 92712 153240 1 81 26866536 36864000 0 130560 0 2272438 99.982 174442 5071 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 10:38:18] CVMFS is ok
[2025-11-24 10:38:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:38:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:38:18] Further information can be found at the LHC@home message board.
[2025-11-24 10:38:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:38:18] Checking for apptainer binary...
[2025-11-24 10:38:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:38:18] Running /usr/bin/apptainer --version
[2025-11-24 10:38:18] apptainer version 1.4.1-1.1
[2025-11-24 10:38:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:38:18] thA315b
[2025-11-24 10:38:18] apptainer works
[2025-11-24 10:38:18] Set ATHENA_PROC_NUMBER=4
[2025-11-24 10:38:18] Set ATHENA_CORE_NUMBER=4
[2025-11-24 10:38:18] Starting ATLAS job with PandaID=6894257863
[2025-11-24 10:38:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 16:43:09]  *** The last 200 lines of the pilot log: ***
[2025-11-24 16:43:09] 2025-11-24 15:42:39,398 | INFO     | --- collectZombieJob: --- 10, [2481016]
[2025-11-24 16:43:09] 2025-11-24 15:42:39,399 | INFO     | zombie collector waiting for pid 2481016
[2025-11-24 16:43:09] 2025-11-24 15:42:39,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 16:43:09] 2025-11-24 15:42:39,399 | INFO     | collected zombie processes
[2025-11-24 16:43:09] 2025-11-24 15:42:39,399 | INFO     | will attempt to kill all subprocesses of pid=2481016
[2025-11-24 16:43:09] 2025-11-24 15:42:39,446 | INFO     | process IDs to be killed: [2481016] (in reverse order)
[2025-11-24 16:43:09] 2025-11-24 15:42:39,474 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 16:43:09] 2025-11-24 15:42:39,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 16:43:09] 2025-11-24 15:42:39,475 | INFO     | did not find any defunct processes belonging to 2481016
[2025-11-24 16:43:09] 2025-11-24 15:42:39,477 | INFO     | did not find any defunct processes belonging to 2481016
[2025-11-24 16:43:09] 2025-11-24 15:42:39,477 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 16:43:09] 2025-11-24 15:42:39,477 | INFO     | ready for new job
[2025-11-24 16:43:09] 2025-11-24 15:42:39,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 16:43:09] 2025-11-24 15:42:39,478 | INFO     | ***************************************
[2025-11-24 16:43:09] 2025-11-24 15:42:39,478 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 16:43:09] 2025-11-24 15:42:39,478 | INFO     | ***************************************
[2025-11-24 16:43:09] 2025-11-24 15:42:39,478 | INFO     | 
[2025-11-24 16:43:09] 2025-11-24 15:42:39,479 | INFO     | architecture information:
[2025-11-24 16:43:09] 2025-11-24 15:42:39,479 | INFO     | executing command: cat /etc/os-release
[2025-11-24 16:43:09] 2025-11-24 15:42:39,489 | INFO     | cat /etc/os-release:
[2025-11-24 16:43:09] NAME="CentOS Linux"
[2025-11-24 16:43:09] VERSION="7 (Core)"
[2025-11-24 16:43:09] ID="centos"
[2025-11-24 16:43:09] ID_LIKE="rhel fedora"
[2025-11-24 16:43:09] VERSION_ID="7"
[2025-11-24 16:43:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 16:43:09] ANSI_COLOR="0;31"
[2025-11-24 16:43:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 16:43:09] HOME_URL="https://www.centos.org/"
[2025-11-24 16:43:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 16:43:09] 
[2025-11-24 16:43:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 16:43:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 16:43:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 16:43:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 16:43:09] 
[2025-11-24 16:43:09] 2025-11-24 15:42:39,489 | INFO     | ***************************************
[2025-11-24 16:43:09] 2025-11-24 15:42:39,992 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 16:43:09] 2025-11-24 15:42:40,006 | INFO     | sufficient remaining disk space (329099771904 B)
[2025-11-24 16:43:09] 2025-11-24 15:42:40,006 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 16:43:09] 2025-11-24 15:42:40,006 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 16:43:09] 2025-11-24 15:42:40,006 | INFO     | update_server=False
[2025-11-24 16:43:09] 2025-11-24 15:42:40,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 16:43:09] 2025-11-24 15:42:40,006 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:43:09] 2025-11-24 15:42:40,077 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 16:43:09] 2025-11-24 15:42:40,077 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 16:43:09] 2025-11-24 15:42:40,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:43:09] 2025-11-24 15:42:40,077 | INFO     | will abort loop
[2025-11-24 16:43:09] 2025-11-24 15:42:40,537 | INFO     | all data control threads have been joined
[2025-11-24 16:43:09] 2025-11-24 15:42:40,660 | INFO     | all job control threads have been joined
[2025-11-24 16:43:09] 2025-11-24 15:42:41,012 | INFO     | [job] retrieve thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,012 | INFO     | [job] queue monitor thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,083 | INFO     | [job] job monitor thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,172 | INFO     | [payload] failed_post thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,212 | INFO     | all payload control threads have been joined
[2025-11-24 16:43:09] 2025-11-24 15:42:41,410 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 16:43:09] 2025-11-24 15:42:41,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 16:43:09] 2025-11-24 15:42:41,532 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,542 | INFO     | [data] control thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,642 | INFO     | [data] copytool_in thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,666 | INFO     | [job] control thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,698 | INFO     | [payload] validate_post thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,731 | INFO     | [job] validate thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,775 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:41,782 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:42,216 | INFO     | [payload] control thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:42,376 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:43,416 | INFO     | [data] copytool_out thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:45,427 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 16:43:09] 2025-11-24 15:42:51,206 | INFO     | [monitor] cgroup control has ended
[2025-11-24 16:43:09] 2025-11-24 15:42:53,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140396308236096)>', '<ExcThread(monitor, started 140395669337856)>']
[2025-11-24 16:43:09] 2025-11-24 15:42:58,072 | INFO     | all workflow threads have been joined
[2025-11-24 16:43:09] 2025-11-24 15:42:58,072 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 16:43:09] 2025-11-24 15:42:58,072 | INFO     | traces error code: 0
[2025-11-24 16:43:09] 2025-11-24 15:42:58,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 16:43:09] 2025-11-24 15:43:09,613 | INFO     | PID=2474445 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 16:43:09] 2025-11-24 15:43:09,613 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 16:43:09] 2025-11-24 15:43:09,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 16:43:09] 2025-11-24 15:43:09,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 16:43:09] 2025-11-24 15:43:09,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 16:43:09] 2025-11-24 15:43:09,614 | INFO     | [monitor] control thread has ended
[2025-11-24 16:43:09] 2025-11-24 15:43:09,665 [wrapper] ==== pilot stdout END ====
[2025-11-24 16:43:09] 2025-11-24 15:43:09,668 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 16:43:09] 2025-11-24 15:43:09,670 [wrapper] pilotpid: 2474445
[2025-11-24 16:43:09] 2025-11-24 15:43:09,673 [wrapper] Pilot exit status: 0
[2025-11-24 16:43:09] 2025-11-24 15:43:09,681 [wrapper] pandaids: 6894257863
[2025-11-24 16:43:09] 2025-11-24 15:43:09,699 [wrapper] cleanup supervisor_pilot 2518812 2474446
[2025-11-24 16:43:09] 2025-11-24 15:43:09,702 [wrapper] Test setup, not cleaning
[2025-11-24 16:43:09] 2025-11-24 15:43:09,704 [wrapper] apfmon messages muted
[2025-11-24 16:43:09] 2025-11-24 15:43:09,707 [wrapper] ==== wrapper stdout END ====
[2025-11-24 16:43:09] 2025-11-24 15:43:09,709 [wrapper] ==== wrapper stderr END ====
[2025-11-24 16:43:09]  *** Error codes and diagnostics ***
[2025-11-24 16:43:09]     "exeErrorCode": 0,
[2025-11-24 16:43:09]     "exeErrorDiag": "",
[2025-11-24 16:43:09]     "pilotErrorCode": 0,
[2025-11-24 16:43:09]     "pilotErrorDiag": "",
[2025-11-24 16:43:09]  *** Listing of results directory ***
[2025-11-24 16:43:09] total 1320400
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc    576529 Nov 21 04:09 pilot3.tar.gz
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc      5112 Nov 21 04:25 queuedata.json
[2025-11-24 16:43:09] -rwx------ 1 boinc boinc     36292 Nov 21 04:26 runpilot2-wrapper.sh
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc       100 Nov 24 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 16:43:09] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 10:38 run_atlas
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc       105 Nov 24 10:38 job.xml
[2025-11-24 16:43:09] -rw-r--r-- 2 boinc boinc 411442774 Nov 24 10:38 EVNT.47493127._002163.pool.root.1
[2025-11-24 16:43:09] -rw-r--r-- 2 boinc boinc    590101 Nov 24 10:38 input.tar.gz
[2025-11-24 16:43:09] -rw-r--r-- 2 boinc boinc     15847 Nov 24 10:38 start_atlas.sh
[2025-11-24 16:43:09] drwxrwx--x 2 boinc boinc      4096 Nov 24 10:38 shared
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc         0 Nov 24 10:38 boinc_setup_complete
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc      6443 Nov 24 10:38 init_data.xml
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc         0 Nov 24 10:38 boinc_lockfile
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc      2785 Nov 24 10:38 pandaJob.out
[2025-11-24 16:43:09] -rw------- 1 boinc boinc    989824 Nov 24 10:38 agis_schedconf.cvmfs.json
[2025-11-24 16:43:09] drwx------ 5 boinc boinc      4096 Nov 24 10:38 pilot3
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc       531 Nov 24 16:39 boinc_task_state.xml
[2025-11-24 16:43:09] -rw------- 1 boinc boinc 928143118 Nov 24 16:42 HITS.47533967._001345.pool.root.1
[2025-11-24 16:43:09] -rw------- 1 boinc boinc        95 Nov 24 16:42 pilot_heartbeat.json
[2025-11-24 16:43:09] -rw------- 1 boinc boinc      1037 Nov 24 16:42 memory_monitor_summary.json
[2025-11-24 16:43:09] -rw------- 1 boinc boinc   1516227 Nov 24 16:42 agis_ddmendpoints.agis.ALL.json
[2025-11-24 16:43:09] -rw------- 1 boinc boinc   1213431 Nov 24 16:42 log.47533967._001345.job.log.tgz.1
[2025-11-24 16:43:09] -rw------- 1 boinc boinc      8564 Nov 24 16:42 heartbeat.json
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc      8192 Nov 24 16:43 boinc_mmap_file
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc        28 Nov 24 16:43 wrapper_checkpoint.txt
[2025-11-24 16:43:09] -rw------- 1 boinc boinc       747 Nov 24 16:43 pilotlog.txt
[2025-11-24 16:43:09] -rw------- 1 boinc boinc   3088471 Nov 24 16:43 log.47533967._001345.job.log.1
[2025-11-24 16:43:09] -rw------- 1 boinc boinc       353 Nov 24 16:43 output.list
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc       620 Nov 24 16:43 runtime_log
[2025-11-24 16:43:09] -rw------- 1 boinc boinc   4321280 Nov 24 16:43 result.tar.gz
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc      8903 Nov 24 16:43 runtime_log.err
[2025-11-24 16:43:09] -rw------- 1 boinc boinc       666 Nov 24 16:43 buFLDmSyWg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwxIKDmgZjiqm.diag
[2025-11-24 16:43:09] -rw-r--r-- 1 boinc boinc     11068 Nov 24 16:43 stderr.txt
[2025-11-24 16:43:09] HITS file was successfully produced:
[2025-11-24 16:43:09] -rw------- 1 boinc boinc 928143118 Nov 24 16:42 shared/HITS.pool.root.1
[2025-11-24 16:43:09]  *** Contents of shared directory: ***
[2025-11-24 16:43:09] total 1313016
[2025-11-24 16:43:09] -rw-r--r-- 2 boinc boinc 411442774 Nov 24 10:38 ATLAS.root_0
[2025-11-24 16:43:09] -rw-r--r-- 2 boinc boinc    590101 Nov 24 10:38 input.tar.gz
[2025-11-24 16:43:09] -rw-r--r-- 2 boinc boinc     15847 Nov 24 10:38 start_atlas.sh
[2025-11-24 16:43:09] -rw------- 1 boinc boinc 928143118 Nov 24 16:42 HITS.pool.root.1
[2025-11-24 16:43:09] -rw------- 1 boinc boinc   4321280 Nov 24 16:43 result.tar.gz
16:43:11 (2470662): run_atlas exited; CPU time 85475.362338
16:43:11 (2470662): called boinc_finish(0)

</stderr_txt>
]]>

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