Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:19:51 (3385201): wrapper (7.7.26015): starting
20:19:51 (3385201): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 20:19:51] Arguments: --nthreads 3
[2025-11-21 20:19:51] Threads: 3
[2025-11-21 20:19:51] Checking for CVMFS
[2025-11-21 20:19:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 20:19:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 20:19:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 20:19:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 20:19:51] 2.9.2.0 16720 1826 75956 153141 1 16 34550004 36864001 0 130560 0 22708444 99.999 45525 1854 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 20:19:51] CVMFS is ok
[2025-11-21 20:19:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 20:19:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 20:19:51] Further information can be found at the LHC@home message board.
[2025-11-21 20:19:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 20:19:51] Checking for apptainer binary...
[2025-11-21 20:19:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 20:19:51] Running /usr/bin/apptainer --version
[2025-11-21 20:19:51] apptainer version 1.4.1-1.1
[2025-11-21 20:19:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 20:19:51] thA335
[2025-11-21 20:19:51] apptainer works
[2025-11-21 20:19:51] Set ATHENA_PROC_NUMBER=3
[2025-11-21 20:19:51] Set ATHENA_CORE_NUMBER=3
[2025-11-21 20:19:51] Starting ATLAS job with PandaID=6893884381
[2025-11-21 20:19:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 20:24:05]  *** The last 200 lines of the pilot log: ***
[2025-11-21 20:24:05] 2025-11-21 19:23:16,660 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 20:24:05] 2025-11-21 19:23:16,660 | INFO     | update_server=False
[2025-11-21 20:24:05] 2025-11-21 19:23:16,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 20:24:05] 2025-11-21 19:23:16,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 20:24:05] 2025-11-21 19:23:16,660 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 20:24:05] 2025-11-21 19:23:16,660 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:24:05] 2025-11-21 19:23:17,394 | INFO     | all data control threads have been joined
[2025-11-21 20:24:05] 2025-11-21 19:23:17,396 | INFO     | all payload control threads have been joined
[2025-11-21 20:24:05] 2025-11-21 19:23:17,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:24:05] 2025-11-21 19:23:17,471 | INFO     | aborting loop
[2025-11-21 20:24:05] 2025-11-21 19:23:17,666 | INFO     | [job] retrieve thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:17,667 | INFO     | [job] queue monitor thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:17,716 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:17,777 | INFO     | [data] copytool_in thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,235 | INFO     | [payload] validate_post thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,300 | INFO     | all job control threads have been joined
[2025-11-21 20:24:05] 2025-11-21 19:23:18,390 | INFO     | [job] validate thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,400 | INFO     | [data] control thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,401 | INFO     | [payload] control thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,463 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,477 | INFO     | [job] job monitor thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,528 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,624 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:18,666 | INFO     | [data] copytool_out thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:19,196 | INFO     | [payload] failed_post thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:19,306 | INFO     | [job] control thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:20,667 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 20:24:05] 2025-11-21 19:23:47,569 | INFO     | PID=3388938 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 20:24:05] 2025-11-21 19:23:47,569 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 20:24:05] 2025-11-21 19:23:47,569 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 20:24:05] 2025-11-21 19:23:47,569 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 20:24:05] 2025-11-21 19:23:58,740 | INFO     | [monitor] cgroup control has ended
[2025-11-21 20:24:05] 2025-11-21 19:24:00,256 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971892311872)>', '<ExcThread(monitor, started 139971096733440)>']
[2025-11-21 20:24:05] 2025-11-21 19:24:00,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 20:24:05] 2025-11-21 19:24:00,634 | INFO     | [monitor] control thread has ended
[2025-11-21 20:24:05] 2025-11-21 19:24:05,282 | INFO     | all workflow threads have been joined
[2025-11-21 20:24:05] 2025-11-21 19:24:05,282 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 20:24:05] 2025-11-21 19:24:05,283 | INFO     | traces error code: 0
[2025-11-21 20:24:05] 2025-11-21 19:24:05,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 20:24:05] 2025-11-21 19:24:05,364 [wrapper] ==== pilot stdout END ====
[2025-11-21 20:24:05] 2025-11-21 19:24:05,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 20:24:05] 2025-11-21 19:24:05,370 [wrapper] pilotpid: 3388938
[2025-11-21 20:24:05] 2025-11-21 19:24:05,373 [wrapper] Pilot exit status: 0
[2025-11-21 20:24:05] 2025-11-21 19:24:05,380 [wrapper] pandaids: 6893884381
[2025-11-21 20:24:05] 2025-11-21 19:24:05,397 [wrapper] cleanup supervisor_pilot 3388944 3388939
[2025-11-21 20:24:05] 2025-11-21 19:24:05,400 [wrapper] Test setup, not cleaning
[2025-11-21 20:24:05] 2025-11-21 19:24:05,403 [wrapper] apfmon messages muted
[2025-11-21 20:24:05] 2025-11-21 19:24:05,406 [wrapper] ==== wrapper stdout END ====
[2025-11-21 20:24:05] 2025-11-21 19:24:05,409 [wrapper] ==== wrapper stderr END ====
[2025-11-21 20:24:05]  *** Error codes and diagnostics ***
[2025-11-21 20:24:05]     "exeErrorCode": 65,
[2025-11-21 20:24:05]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 20:24:05]     "pilotErrorCode": 1305,
[2025-11-21 20:24:05]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-21 20:24:05]  *** Listing of results directory ***
[2025-11-21 20:24:05] total 403952
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc    576529 Nov 20 22:12 pilot3.tar.gz
[2025-11-21 20:24:05] -rwx------ 1 boinc boinc     36292 Nov 20 22:47 runpilot2-wrapper.sh
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc      5112 Nov 20 22:47 queuedata.json
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc       100 Nov 21 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 20:24:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 20:19 run_atlas
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc       105 Nov 21 20:19 job.xml
[2025-11-21 20:24:05] -rw-r--r-- 2 boinc boinc 409447343 Nov 21 20:19 EVNT.47493127._000928.pool.root.1
[2025-11-21 20:24:05] -rw-r--r-- 2 boinc boinc    590104 Nov 21 20:19 input.tar.gz
[2025-11-21 20:24:05] -rw-r--r-- 2 boinc boinc     15847 Nov 21 20:19 start_atlas.sh
[2025-11-21 20:24:05] drwxrwx--x 2 boinc boinc      4096 Nov 21 20:19 shared
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc         0 Nov 21 20:19 boinc_setup_complete
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc      6194 Nov 21 20:19 init_data.xml
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc         0 Nov 21 20:19 boinc_lockfile
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc      2783 Nov 21 20:19 pandaJob.out
[2025-11-21 20:24:05] -rw------- 1 boinc boinc    989798 Nov 21 20:19 agis_schedconf.cvmfs.json
[2025-11-21 20:24:05] -rw------- 1 boinc boinc   1526164 Nov 21 20:19 agis_ddmendpoints.agis.ALL.json
[2025-11-21 20:24:05] drwx------ 5 boinc boinc      4096 Nov 21 20:19 pilot3
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc       523 Nov 21 20:21 boinc_task_state.xml
[2025-11-21 20:24:05] -rw------- 1 boinc boinc       951 Nov 21 20:21 memory_monitor_summary.json
[2025-11-21 20:24:05] -rw------- 1 boinc boinc     55855 Nov 21 20:21 log.47523449._009271.job.log.tgz.1
[2025-11-21 20:24:05] -rw------- 1 boinc boinc        95 Nov 21 20:22 pilot_heartbeat.json
[2025-11-21 20:24:05] -rw------- 1 boinc boinc      8413 Nov 21 20:23 heartbeat.json
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc      8192 Nov 21 20:24 boinc_mmap_file
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc        23 Nov 21 20:24 wrapper_checkpoint.txt
[2025-11-21 20:24:05] -rw------- 1 boinc boinc      4752 Nov 21 20:24 pilotlog.txt
[2025-11-21 20:24:05] -rw------- 1 boinc boinc     93738 Nov 21 20:24 log.47523449._009271.job.log.1
[2025-11-21 20:24:05] -rw------- 1 boinc boinc       186 Nov 21 20:24 output.list
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc       620 Nov 21 20:24 runtime_log
[2025-11-21 20:24:05] -rw------- 1 boinc boinc    174080 Nov 21 20:24 result.tar.gz
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc      8744 Nov 21 20:24 runtime_log.err
[2025-11-21 20:24:05] -rw------- 1 boinc boinc       649 Nov 21 20:24 eAhKDmUgRg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDml6GKDmjt9rum.diag
[2025-11-21 20:24:05] -rw-r--r-- 1 boinc boinc      7892 Nov 21 20:24 stderr.txt
[2025-11-21 20:24:05] No HITS result produced
[2025-11-21 20:24:05]  *** Contents of shared directory: ***
[2025-11-21 20:24:05] total 400624
[2025-11-21 20:24:05] -rw-r--r-- 2 boinc boinc 409447343 Nov 21 20:19 ATLAS.root_0
[2025-11-21 20:24:05] -rw-r--r-- 2 boinc boinc    590104 Nov 21 20:19 input.tar.gz
[2025-11-21 20:24:05] -rw-r--r-- 2 boinc boinc     15847 Nov 21 20:19 start_atlas.sh
[2025-11-21 20:24:05] -rw------- 1 boinc boinc    174080 Nov 21 20:24 result.tar.gz
20:24:06 (3385201): run_atlas exited; CPU time 31.578483
20:24:06 (3385201): called boinc_finish(0)

</stderr_txt>
]]>

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