Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:09:32 (683490): wrapper (7.7.26015): starting
12:09:32 (683490): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 12:09:32] Arguments: --nthreads 8
[2025-11-21 12:09:32] Threads: 8
[2025-11-21 12:09:32] Checking for CVMFS
[2025-11-21 12:09:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:09:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:09:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:09:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:09:34] 2.13.2.0 6051 27488 223944 153135 0 342 22967059 40960000 10961 16776704 0 25475441 99.761 12165941 32510 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 12:09:34] CVMFS is ok
[2025-11-21 12:09:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 12:09:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 12:09:34] Further information can be found at the LHC@home message board.
[2025-11-21 12:09:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:09:34] Checking for apptainer binary...
[2025-11-21 12:09:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:09:34] Running /usr/bin/apptainer --version
[2025-11-21 12:09:34] apptainer version 1.4.4-1.el9
[2025-11-21 12:09:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:09:34] c-210-37-3.aglt2.org
[2025-11-21 12:09:34] apptainer works
[2025-11-21 12:09:34] Set ATHENA_PROC_NUMBER=8
[2025-11-21 12:09:34] Set ATHENA_CORE_NUMBER=8
[2025-11-21 12:09:35] Starting ATLAS job with PandaID=6894257817
[2025-11-21 12:09:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:10:24]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:10:24] 2025-11-22 18:09:16,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 13:10:24] 2025-11-22 18:09:17,251 | INFO     | time since job start (89929s) is within the limit (172800.0s)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,110 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 13:10:24] 2025-11-22 18:09:19,113 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2680.7621785714296
[2025-11-22 13:10:24] 2025-11-22 18:09:19,122 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894257817/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,123 | INFO     | extracted standard info from prmon json
[2025-11-22 13:10:24] 2025-11-22 18:09:19,123 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:10:24] 2025-11-22 18:09:19,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:10:24] 2025-11-22 18:09:19,143 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:10:24] 2025-11-22 18:09:19,144 | INFO     | sum of square deviations: 988929581106.7166
[2025-11-22 13:10:24] 2025-11-22 18:09:19,178 | INFO     | sum of deviations: 5576689592105.574
[2025-11-22 13:10:24] 2025-11-22 18:09:19,179 | INFO     | mean x: 1763790022.0985055
[2025-11-22 13:10:24] 2025-11-22 18:09:19,179 | INFO     | mean y: 2921342.671875
[2025-11-22 13:10:24] 2025-11-22 18:09:19,179 | INFO     | intersect: -9943296918.78285
[2025-11-22 13:10:24] 2025-11-22 18:09:19,180 | INFO     | chi2: 11.220213904670299
[2025-11-22 13:10:24] 2025-11-22 18:09:19,182 | INFO     | sum of square deviations: 978888036364.466
[2025-11-22 13:10:24] 2025-11-22 18:09:19,215 | INFO     | sum of deviations: 6052011217001.507
[2025-11-22 13:10:24] 2025-11-22 18:09:19,216 | INFO     | mean x: 1763789869.6175869
[2025-11-22 13:10:24] 2025-11-22 18:09:19,216 | INFO     | mean y: 2928560.437627812
[2025-11-22 13:10:24] 2025-11-22 18:09:19,216 | INFO     | intersect: -10901767052.151175
[2025-11-22 13:10:24] 2025-11-22 18:09:19,217 | INFO     | chi2: 8.423209184471537
[2025-11-22 13:10:24] 2025-11-22 18:09:19,217 | INFO     | current chi2=8.423209184471537 (change=24.928265574638804 %)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,217 | INFO     | right removable region: 1466
[2025-11-22 13:10:24] 2025-11-22 18:09:19,219 | INFO     | sum of square deviations: 978883098912.7079
[2025-11-22 13:10:24] 2025-11-22 18:09:19,252 | INFO     | sum of deviations: 4960852593531.705
[2025-11-22 13:10:24] 2025-11-22 18:09:19,253 | INFO     | mean x: 1763790174.6169052
[2025-11-22 13:10:24] 2025-11-22 18:09:19,253 | INFO     | mean y: 2930691.0279481937
[2025-11-22 13:10:24] 2025-11-22 18:09:19,253 | INFO     | intersect: -8935729167.246187
[2025-11-22 13:10:24] 2025-11-22 18:09:19,254 | INFO     | chi2: 6.793456065031875
[2025-11-22 13:10:24] 2025-11-22 18:09:19,255 | INFO     | current chi2=6.793456065031875 (change=39.45341753062151 %)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,256 | INFO     | sum of square deviations: 968904761301.9135
[2025-11-22 13:10:24] 2025-11-22 18:09:19,264 | INFO     | time since job start (89931s) is within the limit (172800.0s)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,290 | INFO     | sum of deviations: 4476546413947.752
[2025-11-22 13:10:24] 2025-11-22 18:09:19,290 | INFO     | mean x: 1763790327.1361148
[2025-11-22 13:10:24] 2025-11-22 18:09:19,290 | INFO     | mean y: 2938091.830369357
[2025-11-22 13:10:24] 2025-11-22 18:09:19,290 | INFO     | intersect: -8146148979.72814
[2025-11-22 13:10:24] 2025-11-22 18:09:19,291 | INFO     | chi2: 4.1330336769459075
[2025-11-22 13:10:24] 2025-11-22 18:09:19,292 | INFO     | current chi2=4.1330336769459075 (change=39.16154550229633 %)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,293 | INFO     | sum of square deviations: 958995139099.482
[2025-11-22 13:10:24] 2025-11-22 18:09:19,328 | INFO     | sum of deviations: 4352860818858.252
[2025-11-22 13:10:24] 2025-11-22 18:09:19,328 | INFO     | mean x: 1763790479.6499658
[2025-11-22 13:10:24] 2025-11-22 18:09:19,328 | INFO     | mean y: 2939995.078929307
[2025-11-22 13:10:24] 2025-11-22 18:09:19,328 | INFO     | intersect: -8002871670.194907
[2025-11-22 13:10:24] 2025-11-22 18:09:19,329 | INFO     | chi2: 4.055920397478316
[2025-11-22 13:10:24] 2025-11-22 18:09:19,330 | INFO     | current chi2=4.055920397478316 (change=1.8657791224332476 %)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,330 | INFO     | left removable region: 30
[2025-11-22 13:10:24] 2025-11-22 18:09:19,331 | INFO     | sum of square deviations: 918117996961.9004
[2025-11-22 13:10:24] 2025-11-22 18:09:19,363 | INFO     | sum of deviations: 4716431390208.112
[2025-11-22 13:10:24] 2025-11-22 18:09:19,363 | INFO     | mean x: 1763790754.20961
[2025-11-22 13:10:24] 2025-11-22 18:09:19,363 | INFO     | mean y: 2952746.80362117
[2025-11-22 13:10:24] 2025-11-22 18:09:19,364 | INFO     | intersect: -9057754162.809715
[2025-11-22 13:10:24] 2025-11-22 18:09:19,365 | INFO     | chi2: 0.36294191244455126
[2025-11-22 13:10:24] 2025-11-22 18:09:19,365 | INFO     | current memory leak: 5.14 B/s (using 1436 data points, chi2=0.36)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,366 | INFO     | could have reported an average CPU frequency of 2901 MHz (52 samples)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | ..............................
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . Timing measurements:
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . get job = 0 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . initial setup = 4 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . payload setup = 35 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . stage-in = 0 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . payload execution = 89803 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . stage-out = 3 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | . log creation = 0 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,367 | INFO     | ..............................
[2025-11-22 13:10:24] 2025-11-22 18:09:19,812 | INFO     | 
[2025-11-22 13:10:24] 2025-11-22 18:09:19,812 | INFO     | job summary report
[2025-11-22 13:10:24] 2025-11-22 18:09:19,812 | INFO     | --------------------------------------------------
[2025-11-22 13:10:24] 2025-11-22 18:09:19,812 | INFO     | PanDA job id: 6894257817
[2025-11-22 13:10:24] 2025-11-22 18:09:19,812 | INFO     | task id: 47533967
[2025-11-22 13:10:24] 2025-11-22 18:09:19,812 | INFO     | errors: (none)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | pilot state: finished 
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | transexitcode: 0
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | exeerrorcode: 0
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | exeerrordiag: 
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | exitcode: 0
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | exitmsg: OK
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | cpuconsumptiontime: 229859 s
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | nevents: 1000
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | neventsw: 0
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | pid: 697600
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | pgrp: 697600
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | corecount: 8
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | event service: False
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | sizes: {0: 2298630, 1: 2298829, 12: 2298829, 23: 2298857, 28: 2299147, 34: 2299175, 89842: 2366458, 89848: 2375452, 89851: 2375508, 89869: 2375754}
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | --------------------------------------------------
[2025-11-22 13:10:24] 2025-11-22 18:09:19,813 | INFO     | 
[2025-11-22 13:10:24] 2025-11-22 18:09:19,814 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-22 13:10:24] 2025-11-22 18:09:19,896 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,896 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,896 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,896 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,897 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:10:24] 2025-11-22 18:09:19,898 | INFO     | job 6894257817 has completed (purged errors)
[2025-11-22 13:10:24] 2025-11-22 18:09:19,898 | INFO     | overall cleanup function is called
[2025-11-22 13:10:24] 2025-11-22 18:09:20,933 | INFO     | --- collectZombieJob: --- 10, [697600]
[2025-11-22 13:10:24] 2025-11-22 18:09:20,933 | INFO     | zombie collector waiting for pid 697600
[2025-11-22 13:10:24] 2025-11-22 18:09:20,933 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:10:24] 2025-11-22 18:09:20,933 | INFO     | collected zombie processes
[2025-11-22 13:10:24] 2025-11-22 18:09:20,933 | INFO     | will attempt to kill all subprocesses of pid=697600
[2025-11-22 13:10:24] 2025-11-22 18:09:22,120 | INFO     | process IDs to be killed: [697600] (in reverse order)
[2025-11-22 13:10:24] 2025-11-22 18:09:22,203 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:10:24] 2025-11-22 18:09:22,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:10:24] 2025-11-22 18:09:22,214 | INFO     | did not find any defunct processes belonging to 697600
[2025-11-22 13:10:24] 2025-11-22 18:09:22,224 | INFO     | did not find any defunct processes belonging to 697600
[2025-11-22 13:10:24] 2025-11-22 18:09:22,225 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:10:24] 2025-11-22 18:09:22,226 | INFO     | ready for new job
[2025-11-22 13:10:24] 2025-11-22 18:09:22,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:10:24] 2025-11-22 18:09:22,247 | INFO     | ***************************************
[2025-11-22 13:10:24] 2025-11-22 18:09:22,247 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:10:24] 2025-11-22 18:09:22,247 | INFO     | ***************************************
[2025-11-22 13:10:24] 2025-11-22 18:09:22,247 | INFO     | 
[2025-11-22 13:10:24] 2025-11-22 18:09:22,286 | INFO     | architecture information:
[2025-11-22 13:10:24] 2025-11-22 18:09:22,311 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:10:24] 2025-11-22 18:09:22,470 | INFO     | cat /etc/os-release:
[2025-11-22 13:10:24] NAME="CentOS Linux"
[2025-11-22 13:10:24] VERSION="7 (Core)"
[2025-11-22 13:10:24] ID="centos"
[2025-11-22 13:10:24] ID_LIKE="rhel fedora"
[2025-11-22 13:10:24] VERSION_ID="7"
[2025-11-22 13:10:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:10:24] ANSI_COLOR="0;31"
[2025-11-22 13:10:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:10:24] HOME_URL="https://www.centos.org/"
[2025-11-22 13:10:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:10:24] 
[2025-11-22 13:10:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:10:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:10:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:10:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:10:24] 
[2025-11-22 13:10:24] 2025-11-22 18:09:22,471 | INFO     | ***************************************
[2025-11-22 13:10:24] 2025-11-22 18:09:22,974 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-22 13:10:24] 2025-11-22 18:09:23,101 | INFO     | sufficient remaining disk space (70285000704 B)
[2025-11-22 13:10:24] 2025-11-22 18:09:23,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:10:24] 2025-11-22 18:09:23,102 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:10:24] 2025-11-22 18:09:23,102 | INFO     | update_server=False
[2025-11-22 13:10:24] 2025-11-22 18:09:23,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:10:24] 2025-11-22 18:09:23,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:10:24] 2025-11-22 18:09:23,103 | INFO     | aborting loop
[2025-11-22 13:10:24] 2025-11-22 18:09:23,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:10:24] 2025-11-22 18:09:23,466 | INFO     | all job control threads have been joined
[2025-11-22 13:10:24] 2025-11-22 18:09:23,609 | INFO     | all payload control threads have been joined
[2025-11-22 13:10:24] 2025-11-22 18:09:24,089 | INFO     | all data control threads have been joined
[2025-11-22 13:10:24] 2025-11-22 18:09:24,107 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:24,109 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:24,119 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:24,229 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:24,437 | INFO     | [job] validate thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:24,480 | INFO     | [job] control thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:24,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:10:24] 2025-11-22 18:09:24,615 | INFO     | [payload] control thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:24,706 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:25,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:10:24] 2025-11-22 18:09:25,063 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:25,064 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:25,095 | INFO     | [data] control thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:25,180 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:25,326 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:25,489 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:25,574 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:29,043 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:10:24] 2025-11-22 18:09:53,047 | INFO     | PID=689662 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 13:10:24] 2025-11-22 18:09:53,048 | INFO     | .. there are 11 such processes running
[2025-11-22 13:10:24] 2025-11-22 18:09:53,049 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:10:24] 2025-11-22 18:09:53,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:10:24] 2025-11-22 18:09:53,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:10:24] 2025-11-22 18:10:17,141 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:10:24] 2025-11-22 18:10:18,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139749582014272)>', '<ExcThread(monitor, started 139749083825920)>']
[2025-11-22 13:10:24] 2025-11-22 18:10:19,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:10:24] 2025-11-22 18:10:19,205 | INFO     | [monitor] control thread has ended
[2025-11-22 13:10:24] 2025-11-22 18:10:23,362 | INFO     | all workflow threads have been joined
[2025-11-22 13:10:24] 2025-11-22 18:10:23,362 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:10:24] 2025-11-22 18:10:23,363 | INFO     | traces error code: 0
[2025-11-22 13:10:24] 2025-11-22 18:10:23,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:10:24] 2025-11-22 18:10:23,626 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:10:24] 2025-11-22 18:10:23,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:10:24] 2025-11-22 18:10:23,631 [wrapper] pilotpid: 689662
[2025-11-22 13:10:24] 2025-11-22 18:10:23,634 [wrapper] Pilot exit status: 0
[2025-11-22 13:10:24] 2025-11-22 18:10:23,727 [wrapper] pandaids: 6894257817
[2025-11-22 13:10:24] 2025-11-22 18:10:24,245 [wrapper] cleanup supervisor_pilot 3070885 689663
[2025-11-22 13:10:24] 2025-11-22 18:10:24,250 [wrapper] Test setup, not cleaning
[2025-11-22 13:10:24] 2025-11-22 18:10:24,253 [wrapper] apfmon messages muted
[2025-11-22 13:10:24] 2025-11-22 18:10:24,255 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:10:24] 2025-11-22 18:10:24,258 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:10:24]  *** Error codes and diagnostics ***
[2025-11-22 13:10:24]     "exeErrorCode": 0,
[2025-11-22 13:10:24]     "exeErrorDiag": "",
[2025-11-22 13:10:24]     "pilotErrorCode": 0,
[2025-11-22 13:10:24]     "pilotErrorDiag": "",
[2025-11-22 13:10:24]  *** Listing of results directory ***
[2025-11-22 13:10:24] total 1320820
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 22:09 pilot3.tar.gz
[2025-11-22 13:10:24] -rwx------. 1 boincer umatlas     36292 Nov 20 22:19 runpilot2-wrapper.sh
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 22:19 queuedata.json
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas       100 Nov 21 12:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:10:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 12:09 run_atlas
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas       105 Nov 21 12:09 job.xml
[2025-11-22 13:10:24] -rw-r--r--. 2 boincer umatlas 408912468 Nov 21 12:09 EVNT.47493127._002161.pool.root.1
[2025-11-22 13:10:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 12:09 start_atlas.sh
[2025-11-22 13:10:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 12:09 shared
[2025-11-22 13:10:24] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 12:09 input.tar.gz
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas         0 Nov 21 12:09 boinc_lockfile
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas      2783 Nov 21 12:09 pandaJob.out
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas        57 Nov 21 12:09 setup.sh.local
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas    989798 Nov 21 12:10 agis_schedconf.cvmfs.json
[2025-11-22 13:10:24] drwx------. 5 boincer umatlas      4096 Nov 21 12:10 pilot3
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas       533 Nov 22 12:55 boinc_task_state.xml
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas      6843 Nov 22 13:02 init_data.xml
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas 912033480 Nov 22 13:08 HITS.47533967._001321.pool.root.1
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas      1060 Nov 22 13:08 memory_monitor_summary.json
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas   1526164 Nov 22 13:08 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas   2476799 Nov 22 13:08 log.47533967._001321.job.log.tgz.1
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas        95 Nov 22 13:09 pilot_heartbeat.json
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas      8617 Nov 22 13:09 heartbeat.json
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas      4823 Nov 22 13:10 pilotlog.txt
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas        29 Nov 22 13:10 wrapper_checkpoint.txt
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas  11355856 Nov 22 13:10 log.47533967._001321.job.log.1
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas       353 Nov 22 13:10 output.list
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 13:10 boinc_mmap_file
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas       620 Nov 22 13:10 runtime_log
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas  13854720 Nov 22 13:10 result.tar.gz
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas       662 Nov 22 13:10 w6rNDmorWg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6HHKDmGYFaQn.diag
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas      9353 Nov 22 13:10 runtime_log.err
[2025-11-22 13:10:24] -rw-r--r--. 1 boincer umatlas      2141 Nov 22 13:10 stderr.txt
[2025-11-22 13:10:24] HITS file was successfully produced:
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas 912033480 Nov 22 13:08 shared/HITS.pool.root.1
[2025-11-22 13:10:24]  *** Contents of shared directory: ***
[2025-11-22 13:10:24] total 1304124
[2025-11-22 13:10:24] -rw-r--r--. 2 boincer umatlas 408912468 Nov 21 12:09 ATLAS.root_0
[2025-11-22 13:10:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 12:09 start_atlas.sh
[2025-11-22 13:10:24] -rw-r--r--. 2 boincer umatlas    590102 Nov 21 12:09 input.tar.gz
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas 912033480 Nov 22 13:08 HITS.pool.root.1
[2025-11-22 13:10:24] -rw-------. 1 boincer umatlas  13854720 Nov 22 13:10 result.tar.gz
13:10:26 (683490): run_atlas exited; CPU time 231221.662061
13:10:26 (683490): called boinc_finish(0)

</stderr_txt>
]]>

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