Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:38:59 (2613025): wrapper (7.7.26015): starting
11:38:59 (2613025): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 11:39:00] Arguments: --nthreads 8
[2025-11-21 11:39:00] Threads: 8
[2025-11-21 11:39:00] Checking for CVMFS
[2025-11-21 11:39:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:39:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:39:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:39:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:39:00] 2.13.2.0 11163 30355 213840 153135 3 104 37191943 40960000 8575 16776704 0 22322272 99.598 17081730 32889 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 11:39:00] CVMFS is ok
[2025-11-21 11:39:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 11:39:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 11:39:00] Further information can be found at the LHC@home message board.
[2025-11-21 11:39:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:39:00] Checking for apptainer binary...
[2025-11-21 11:39:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:39:00] Running /usr/bin/apptainer --version
[2025-11-21 11:39:00] apptainer version 1.4.4-1.el9
[2025-11-21 11:39:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:39:00] c-210-35-1.aglt2.org
[2025-11-21 11:39:00] apptainer works
[2025-11-21 11:39:01] Set ATHENA_PROC_NUMBER=8
[2025-11-21 11:39:01] Set ATHENA_CORE_NUMBER=8
[2025-11-21 11:39:01] Starting ATLAS job with PandaID=6893883824
[2025-11-21 11:39:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 20:46:56]  *** The last 200 lines of the pilot log: ***
[2025-11-22 20:46:56] 2025-11-23 01:45:51,680 | INFO     | time since job start (119155s) is within the limit (172800.0s)
[2025-11-22 20:46:56] 2025-11-23 01:45:52,452 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 20:46:56] 2025-11-23 01:45:52,464 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2767.3924285714297
[2025-11-22 20:46:56] 2025-11-23 01:45:52,473 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893883824/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 20:46:56] 2025-11-23 01:45:52,474 | INFO     | extracted standard info from prmon json
[2025-11-22 20:46:56] 2025-11-23 01:45:52,474 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 20:46:56] 2025-11-23 01:45:52,474 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 20:46:56] 2025-11-23 01:45:52,530 | INFO     | fitting pss+swap vs Time
[2025-11-22 20:46:56] 2025-11-23 01:45:52,536 | INFO     | sum of square deviations: 2302627575835.424
[2025-11-22 20:46:56] 2025-11-23 01:45:52,666 | INFO     | sum of deviations: 12197841140279.803
[2025-11-22 20:46:56] 2025-11-23 01:45:52,666 | INFO     | mean x: 1763802812.3300872
[2025-11-22 20:46:56] 2025-11-23 01:45:52,666 | INFO     | mean y: 2933001.4971809327
[2025-11-22 20:46:56] 2025-11-23 01:45:52,667 | INFO     | intersect: -9340560811.120508
[2025-11-22 20:46:56] 2025-11-23 01:45:52,673 | INFO     | chi2: 8.62368836227903
[2025-11-22 20:46:56] 2025-11-23 01:45:52,675 | INFO     | sum of square deviations: 2284970965463.9336
[2025-11-22 20:46:56] 2025-11-23 01:45:52,802 | INFO     | sum of deviations: 12891929770014.473
[2025-11-22 20:46:56] 2025-11-23 01:45:52,802 | INFO     | mean x: 1763802659.8412127
[2025-11-22 20:46:56] 2025-11-23 01:45:52,802 | INFO     | mean y: 2938995.752312436
[2025-11-22 20:46:56] 2025-11-23 01:45:52,802 | INFO     | intersect: -9948531006.502539
[2025-11-22 20:46:56] 2025-11-23 01:45:52,804 | INFO     | chi2: 5.236725768371288
[2025-11-22 20:46:56] 2025-11-23 01:45:52,805 | INFO     | current chi2=5.236725768371288 (change=39.27510424336171 %)
[2025-11-22 20:46:56] 2025-11-23 01:45:52,811 | INFO     | sum of square deviations: 2267404868416.9604
[2025-11-22 20:46:56] 2025-11-23 01:45:52,894 | INFO     | sum of deviations: 12988673801687.287
[2025-11-22 20:46:56] 2025-11-23 01:45:52,894 | INFO     | mean x: 1763802507.3523958
[2025-11-22 20:46:56] 2025-11-23 01:45:52,895 | INFO     | mean y: 2939833.4600721276
[2025-11-22 20:46:56] 2025-11-23 01:45:52,895 | INFO     | intersect: -10100882266.292746
[2025-11-22 20:46:56] 2025-11-23 01:45:52,897 | INFO     | chi2: 4.859055617132726
[2025-11-22 20:46:56] 2025-11-23 01:45:52,897 | INFO     | current chi2=4.859055617132726 (change=7.211952046823032 %)
[2025-11-22 20:46:56] 2025-11-23 01:45:52,897 | INFO     | right removable region: 1940
[2025-11-22 20:46:56] 2025-11-23 01:45:52,899 | INFO     | sum of square deviations: 2284965812183.9365
[2025-11-22 20:46:56] 2025-11-23 01:45:52,970 | INFO     | sum of deviations: 11436650822733.307
[2025-11-22 20:46:56] 2025-11-23 01:45:52,971 | INFO     | mean x: 1763802964.8412127
[2025-11-22 20:46:56] 2025-11-23 01:45:52,971 | INFO     | mean y: 2939573.5673175743
[2025-11-22 20:46:56] 2025-11-23 01:45:52,971 | INFO     | intersect: -8825200664.430643
[2025-11-22 20:46:56] 2025-11-23 01:45:52,977 | INFO     | chi2: 4.910634639038292
[2025-11-22 20:46:56] 2025-11-23 01:45:52,978 | INFO     | current chi2=4.910634639038292 (change=43.056446003800964 %)
[2025-11-22 20:46:56] 2025-11-23 01:45:52,984 | INFO     | sum of square deviations: 2267395036343.7695
[2025-11-22 20:46:56] 2025-11-23 01:45:53,169 | INFO     | sum of deviations: 11115854194148.693
[2025-11-22 20:46:56] 2025-11-23 01:45:53,169 | INFO     | mean x: 1763803117.350335
[2025-11-22 20:46:56] 2025-11-23 01:45:53,169 | INFO     | mean y: 2942356.23132406
[2025-11-22 20:46:56] 2025-11-23 01:45:53,169 | INFO     | intersect: -8644063553.80485
[2025-11-22 20:46:56] 2025-11-23 01:45:53,177 | INFO     | chi2: 4.293546197931751
[2025-11-22 20:46:56] 2025-11-23 01:45:53,178 | INFO     | current chi2=4.293546197931751 (change=12.56636843231718 %)
[2025-11-22 20:46:56] 2025-11-23 01:45:53,178 | INFO     | left removable region: 20
[2025-11-22 20:46:56] 2025-11-23 01:45:53,188 | INFO     | sum of square deviations: 2194593928989.6858
[2025-11-22 20:46:56] 2025-11-23 01:45:53,316 | INFO     | sum of deviations: 11592693507604.34
[2025-11-22 20:46:56] 2025-11-23 01:45:53,317 | INFO     | mean x: 1763803086.8807292
[2025-11-22 20:46:56] 2025-11-23 01:45:53,317 | INFO     | mean y: 2951830.6609375
[2025-11-22 20:46:56] 2025-11-23 01:45:53,317 | INFO     | intersect: -9314137916.04583
[2025-11-22 20:46:56] 2025-11-23 01:45:53,319 | INFO     | chi2: 0.4434101716113744
[2025-11-22 20:46:56] 2025-11-23 01:45:53,320 | INFO     | current memory leak: 5.28 B/s (using 1920 data points, chi2=0.44)
[2025-11-22 20:46:56] 2025-11-23 01:45:53,322 | INFO     | could have reported an average CPU frequency of 2799 MHz (68 samples)
[2025-11-22 20:46:56] 2025-11-23 01:45:53,322 | INFO     | ..............................
[2025-11-22 20:46:56] 2025-11-23 01:45:53,322 | INFO     | . Timing measurements:
[2025-11-22 20:46:56] 2025-11-23 01:45:53,322 | INFO     | . get job = 0 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,322 | INFO     | . initial setup = 5 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,322 | INFO     | . payload setup = 43 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,323 | INFO     | . stage-in = 0 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,323 | INFO     | . payload execution = 119008 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,323 | INFO     | . stage-out = 6 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,323 | INFO     | . log creation = 1 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,323 | INFO     | ..............................
[2025-11-22 20:46:56] 2025-11-23 01:45:53,477 | INFO     | 
[2025-11-22 20:46:56] 2025-11-23 01:45:53,477 | INFO     | job summary report
[2025-11-22 20:46:56] 2025-11-23 01:45:53,477 | INFO     | --------------------------------------------------
[2025-11-22 20:46:56] 2025-11-23 01:45:53,477 | INFO     | PanDA job id: 6893883824
[2025-11-22 20:46:56] 2025-11-23 01:45:53,477 | INFO     | task id: 47523449
[2025-11-22 20:46:56] 2025-11-23 01:45:53,477 | INFO     | errors: (none)
[2025-11-22 20:46:56] 2025-11-23 01:45:53,477 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | pilot state: finished 
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | transexitcode: 0
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | exeerrorcode: 0
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | exeerrordiag: 
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | exitcode: 0
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | exitmsg: OK
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | cpuconsumptiontime: 244624 s
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | nevents: 1000
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | neventsw: 0
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | pid: 2639683
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | pgrp: 2639683
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | corecount: 8
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | event service: False
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | sizes: {0: 2298529, 1: 2298613, 2: 2298812, 3: 2298812, 14: 2298840, 25: 2298868, 32: 2299286, 36: 2299314, 119056: 2379037, 119063: 2388031, 119064: 2388087, 1190
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | --------------------------------------------------
[2025-11-22 20:46:56] 2025-11-23 01:45:53,478 | INFO     | 
[2025-11-22 20:46:56] 2025-11-23 01:45:53,483 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-22 20:46:56] 2025-11-23 01:45:53,542 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,543 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | job 6893883824 has completed (purged errors)
[2025-11-22 20:46:56] 2025-11-23 01:45:53,544 | INFO     | overall cleanup function is called
[2025-11-22 20:46:56] 2025-11-23 01:45:54,578 | INFO     | --- collectZombieJob: --- 10, [2639683]
[2025-11-22 20:46:56] 2025-11-23 01:45:54,578 | INFO     | zombie collector waiting for pid 2639683
[2025-11-22 20:46:56] 2025-11-23 01:45:54,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 20:46:56] 2025-11-23 01:45:54,578 | INFO     | collected zombie processes
[2025-11-22 20:46:56] 2025-11-23 01:45:54,578 | INFO     | will attempt to kill all subprocesses of pid=2639683
[2025-11-22 20:46:56] 2025-11-23 01:45:55,004 | INFO     | process IDs to be killed: [2639683] (in reverse order)
[2025-11-22 20:46:56] 2025-11-23 01:45:55,087 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 20:46:56] 2025-11-23 01:45:55,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 20:46:56] 2025-11-23 01:45:55,170 | INFO     | did not find any defunct processes belonging to 2639683
[2025-11-22 20:46:56] 2025-11-23 01:45:55,187 | INFO     | did not find any defunct processes belonging to 2639683
[2025-11-22 20:46:56] 2025-11-23 01:45:55,188 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 20:46:56] 2025-11-23 01:45:55,188 | INFO     | ready for new job
[2025-11-22 20:46:56] 2025-11-23 01:45:55,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 20:46:56] 2025-11-23 01:45:55,202 | INFO     | ***************************************
[2025-11-22 20:46:56] 2025-11-23 01:45:55,203 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 20:46:56] 2025-11-23 01:45:55,203 | INFO     | ***************************************
[2025-11-22 20:46:56] 2025-11-23 01:45:55,203 | INFO     | 
[2025-11-22 20:46:56] 2025-11-23 01:45:55,211 | INFO     | architecture information:
[2025-11-22 20:46:56] 2025-11-23 01:45:55,212 | INFO     | executing command: cat /etc/os-release
[2025-11-22 20:46:56] 2025-11-23 01:45:55,265 | INFO     | cat /etc/os-release:
[2025-11-22 20:46:56] NAME="CentOS Linux"
[2025-11-22 20:46:56] VERSION="7 (Core)"
[2025-11-22 20:46:56] ID="centos"
[2025-11-22 20:46:56] ID_LIKE="rhel fedora"
[2025-11-22 20:46:56] VERSION_ID="7"
[2025-11-22 20:46:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 20:46:56] ANSI_COLOR="0;31"
[2025-11-22 20:46:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 20:46:56] HOME_URL="https://www.centos.org/"
[2025-11-22 20:46:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 20:46:56] 
[2025-11-22 20:46:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 20:46:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 20:46:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 20:46:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 20:46:56] 
[2025-11-22 20:46:56] 2025-11-23 01:45:55,265 | INFO     | ***************************************
[2025-11-22 20:46:56] 2025-11-23 01:45:55,769 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-22 20:46:56] 2025-11-23 01:45:55,831 | INFO     | sufficient remaining disk space (71550631936 B)
[2025-11-22 20:46:56] 2025-11-23 01:45:55,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 20:46:56] 2025-11-23 01:45:55,833 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 20:46:56] 2025-11-23 01:45:55,833 | INFO     | update_server=False
[2025-11-22 20:46:56] 2025-11-23 01:45:55,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 20:46:56] 2025-11-23 01:45:55,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 20:46:56] 2025-11-23 01:45:55,865 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 20:46:56] 2025-11-23 01:45:55,865 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 20:46:56] 2025-11-23 01:45:55,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:46:56] 2025-11-23 01:45:55,865 | INFO     | will abort loop
[2025-11-22 20:46:56] 2025-11-23 01:45:55,871 | INFO     | all job control threads have been joined
[2025-11-22 20:46:56] 2025-11-23 01:45:56,112 | INFO     | all payload control threads have been joined
[2025-11-22 20:46:56] 2025-11-23 01:45:56,840 | INFO     | [job] retrieve thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:56,871 | INFO     | [job] job monitor thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:56,877 | INFO     | [job] control thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:56,899 | INFO     | [payload] failed_post thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:56,918 | INFO     | all data control threads have been joined
[2025-11-22 20:46:56] 2025-11-23 01:45:57,010 | INFO     | [job] validate thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,010 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,052 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,118 | INFO     | [payload] control thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,547 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,681 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,708 | INFO     | [data] copytool_in thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,842 | INFO     | [data] copytool_out thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:57,925 | INFO     | [data] control thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:58,153 | INFO     | [payload] validate_post thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:45:58,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 20:46:56] 2025-11-23 01:45:58,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 20:46:56] 2025-11-23 01:45:59,497 | INFO     | [job] queue monitor thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:46:02,840 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 20:46:56] 2025-11-23 01:46:26,793 | INFO     | PID=2620643 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 20:46:56] 2025-11-23 01:46:26,794 | INFO     | .. there are 9 such processes running
[2025-11-22 20:46:56] 2025-11-23 01:46:26,838 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 20:46:56] 2025-11-23 01:46:26,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 20:46:56] 2025-11-23 01:46:26,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 20:46:56] 2025-11-23 01:46:47,135 | INFO     | [monitor] cgroup control has ended
[2025-11-22 20:46:56] 2025-11-23 01:46:47,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721093338944)>', '<ExcThread(monitor, started 139720344446720)>']
[2025-11-22 20:46:56] 2025-11-23 01:46:47,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 20:46:56] 2025-11-23 01:46:47,962 | INFO     | [monitor] control thread has ended
[2025-11-22 20:46:56] 2025-11-23 01:46:52,229 | INFO     | all workflow threads have been joined
[2025-11-22 20:46:56] 2025-11-23 01:46:52,229 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 20:46:56] 2025-11-23 01:46:52,249 | INFO     | traces error code: 0
[2025-11-22 20:46:56] 2025-11-23 01:46:52,249 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 20:46:56] 2025-11-23 01:46:54,765 [wrapper] ==== pilot stdout END ====
[2025-11-22 20:46:56] 2025-11-23 01:46:54,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 20:46:56] 2025-11-23 01:46:54,930 [wrapper] pilotpid: 2620643
[2025-11-22 20:46:56] 2025-11-23 01:46:54,981 [wrapper] Pilot exit status: 0
[2025-11-22 20:46:56] 2025-11-23 01:46:55,141 [wrapper] pandaids: 6893883824
[2025-11-22 20:46:56] 2025-11-23 01:46:55,793 [wrapper] cleanup supervisor_pilot 1309800 2620644
[2025-11-22 20:46:56] 2025-11-23 01:46:55,817 [wrapper] Test setup, not cleaning
[2025-11-22 20:46:56] 2025-11-23 01:46:55,829 [wrapper] apfmon messages muted
[2025-11-22 20:46:56] 2025-11-23 01:46:55,833 [wrapper] ==== wrapper stdout END ====
[2025-11-22 20:46:56] 2025-11-23 01:46:55,836 [wrapper] ==== wrapper stderr END ====
[2025-11-22 20:46:56]  *** Error codes and diagnostics ***
[2025-11-22 20:46:56]     "exeErrorCode": 0,
[2025-11-22 20:46:56]     "exeErrorDiag": "",
[2025-11-22 20:46:56]     "pilotErrorCode": 0,
[2025-11-22 20:46:56]     "pilotErrorDiag": "",
[2025-11-22 20:46:56]  *** Listing of results directory ***
[2025-11-22 20:46:56] total 1336736
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 16:12 pilot3.tar.gz
[2025-11-22 20:46:56] -rwx------. 1 boincer umatlas     36292 Nov 20 16:38 runpilot2-wrapper.sh
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 16:38 queuedata.json
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas       100 Nov 21 11:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 20:46:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 11:38 run_atlas
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas       105 Nov 21 11:38 job.xml
[2025-11-22 20:46:56] -rw-r--r--. 2 boincer umatlas 409996790 Nov 21 11:38 EVNT.47493127._000918.pool.root.1
[2025-11-22 20:46:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:38 start_atlas.sh
[2025-11-22 20:46:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 11:38 shared
[2025-11-22 20:46:56] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 11:38 input.tar.gz
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas         0 Nov 21 11:38 boinc_lockfile
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas      2785 Nov 21 11:39 pandaJob.out
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas        57 Nov 21 11:39 setup.sh.local
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas    989798 Nov 21 11:39 agis_schedconf.cvmfs.json
[2025-11-22 20:46:56] drwx------. 5 boincer umatlas      4096 Nov 21 11:39 pilot3
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas      6844 Nov 22 20:36 init_data.xml
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas       533 Nov 22 20:37 boinc_task_state.xml
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas 921304408 Nov 22 20:44 HITS.47523449._009179.pool.root.1
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas      1060 Nov 22 20:45 memory_monitor_summary.json
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas   1526164 Nov 22 20:45 agis_ddmendpoints.agis.ALL.json
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas   2747283 Nov 22 20:45 log.47523449._009179.job.log.tgz.1
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas      8624 Nov 22 20:45 heartbeat.json
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas        95 Nov 22 20:46 pilot_heartbeat.json
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas      5009 Nov 22 20:46 pilotlog.txt
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 20:46 boinc_mmap_file
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas        29 Nov 22 20:46 wrapper_checkpoint.txt
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas  14051580 Nov 22 20:46 log.47523449._009179.job.log.1
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas       353 Nov 22 20:46 output.list
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas       620 Nov 22 20:46 runtime_log
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas  16814080 Nov 22 20:46 result.tar.gz
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas      9354 Nov 22 20:46 runtime_log.err
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas       665 Nov 22 20:46 rPkMDmcXRg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmG6GKDmCtGpsm.diag
[2025-11-22 20:46:56] -rw-r--r--. 1 boincer umatlas     21354 Nov 22 20:46 stderr.txt
[2025-11-22 20:46:56] HITS file was successfully produced:
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas 921304408 Nov 22 20:44 shared/HITS.pool.root.1
[2025-11-22 20:46:56]  *** Contents of shared directory: ***
[2025-11-22 20:46:56] total 1317124
[2025-11-22 20:46:56] -rw-r--r--. 2 boincer umatlas 409996790 Nov 21 11:38 ATLAS.root_0
[2025-11-22 20:46:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:38 start_atlas.sh
[2025-11-22 20:46:56] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 11:38 input.tar.gz
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas 921304408 Nov 22 20:44 HITS.pool.root.1
[2025-11-22 20:46:56] -rw-------. 1 boincer umatlas  16814080 Nov 22 20:46 result.tar.gz
20:46:57 (2613025): run_atlas exited; CPU time 246923.759316
20:46:57 (2613025): called boinc_finish(0)

</stderr_txt>
]]>

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