Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:36:44 (2257094): wrapper (7.7.26015): starting
19:36:44 (2257094): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 19:36:44] Arguments: --nthreads 4
[2025-11-21 19:36:44] Threads: 4
[2025-11-21 19:36:44] Checking for CVMFS
[2025-11-21 19:36:44] No cvmfs_config command found, will try listing directly
[2025-11-21 19:36:44] CVMFS is ok
[2025-11-21 19:36:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 19:36:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 19:36:44] Further information can be found at the LHC@home message board.
[2025-11-21 19:36:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 19:36:44] Checking for apptainer binary...
[2025-11-21 19:36:44] which: no apptainer in ((null))
[2025-11-21 19:36:44] apptainer is not installed, using version from CVMFS
[2025-11-21 19:36:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 19:36:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2025-11-21 19:36:44] apptainer works
[2025-11-21 19:36:44] Set ATHENA_PROC_NUMBER=4
[2025-11-21 19:36:44] Set ATHENA_CORE_NUMBER=4
[2025-11-21 19:36:44] Starting ATLAS job with PandaID=6894257087
[2025-11-21 19:36:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 17:05:03]  *** The last 200 lines of the pilot log: ***
[2025-11-22 17:05:03] 2025-11-22 16:01:11,287 | INFO     | monitor loop #5559: job 0:6894257087 is in state 'finished'
[2025-11-22 17:05:03] 2025-11-22 16:01:11,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,201 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 17:05:03] 2025-11-22 16:01:12,208 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2603.8525500000005
[2025-11-22 17:05:03] 2025-11-22 16:01:12,216 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6894257087/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,217 | INFO     | extracted standard info from prmon json
[2025-11-22 17:05:03] 2025-11-22 16:01:12,218 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 17:05:03] 2025-11-22 16:01:12,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 17:05:03] 2025-11-22 16:01:12,242 | INFO     | fitting pss+swap vs Time
[2025-11-22 17:05:03] 2025-11-22 16:01:12,244 | INFO     | sum of square deviations: 624723329426.904
[2025-11-22 17:05:03] 2025-11-22 16:01:12,286 | INFO     | sum of deviations: 1750466898713.004
[2025-11-22 17:05:03] 2025-11-22 16:01:12,286 | INFO     | mean x: 1763788733.0087094
[2025-11-22 17:05:03] 2025-11-22 16:01:12,287 | INFO     | mean y: 2312209.8178939032
[2025-11-22 17:05:03] 2025-11-22 16:01:12,287 | INFO     | intersect: -4939801599.645568
[2025-11-22 17:05:03] 2025-11-22 16:01:12,288 | INFO     | chi2: 4.620372605910268
[2025-11-22 17:05:03] 2025-11-22 16:01:12,290 | INFO     | sum of square deviations: 617333138404.4039
[2025-11-22 17:05:03] 2025-11-22 16:01:12,331 | INFO     | sum of deviations: 2034381912090.3613
[2025-11-22 17:05:03] 2025-11-22 16:01:12,331 | INFO     | mean x: 1763788580.508744
[2025-11-22 17:05:03] 2025-11-22 16:01:12,331 | INFO     | mean y: 2318065.285373609
[2025-11-22 17:05:03] 2025-11-22 16:01:12,332 | INFO     | intersect: -5810134501.594236
[2025-11-22 17:05:03] 2025-11-22 16:01:12,333 | INFO     | chi2: 2.192743263104343
[2025-11-22 17:05:03] 2025-11-22 16:01:12,334 | INFO     | current chi2=2.192743263104343 (change=52.54185213765143 %)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,335 | INFO     | sum of square deviations: 610001460106.9015
[2025-11-22 17:05:03] 2025-11-22 16:01:12,341 | INFO     | time since job start (77057s) is within the limit (172800.0s)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,376 | INFO     | sum of deviations: 2117811151461.821
[2025-11-22 17:05:03] 2025-11-22 16:01:12,376 | INFO     | mean x: 1763788428.008779
[2025-11-22 17:05:03] 2025-11-22 16:01:12,377 | INFO     | mean y: 2319799.833998404
[2025-11-22 17:05:03] 2025-11-22 16:01:12,377 | INFO     | intersect: -6121224233.981415
[2025-11-22 17:05:03] 2025-11-22 16:01:12,378 | INFO     | chi2: 1.921578285858151
[2025-11-22 17:05:03] 2025-11-22 16:01:12,379 | INFO     | current chi2=1.921578285858151 (change=12.366471798540347 %)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,379 | INFO     | right removable region: 1252
[2025-11-22 17:05:03] 2025-11-22 16:01:12,381 | INFO     | sum of square deviations: 617333131694.4039
[2025-11-22 17:05:03] 2025-11-22 16:01:12,421 | INFO     | sum of deviations: 1518379398819.8523
[2025-11-22 17:05:03] 2025-11-22 16:01:12,422 | INFO     | mean x: 1763788885.508744
[2025-11-22 17:05:03] 2025-11-22 16:01:12,422 | INFO     | mean y: 2316992.7861685213
[2025-11-22 17:05:03] 2025-11-22 16:01:12,422 | INFO     | intersect: -4335860516.451477
[2025-11-22 17:05:03] 2025-11-22 16:01:12,424 | INFO     | chi2: 2.8584292808107588
[2025-11-22 17:05:03] 2025-11-22 16:01:12,424 | INFO     | current chi2=2.8584292808107588 (change=38.134225859742884 %)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,426 | INFO     | sum of square deviations: 610001600160.9353
[2025-11-22 17:05:03] 2025-11-22 16:01:12,466 | INFO     | sum of deviations: 1486882848451.3289
[2025-11-22 17:05:03] 2025-11-22 16:01:12,466 | INFO     | mean x: 1763789038.0071828
[2025-11-22 17:05:03] 2025-11-22 16:01:12,466 | INFO     | mean y: 2317647.741420591
[2025-11-22 17:05:03] 2025-11-22 16:01:12,466 | INFO     | intersect: -4296929548.01585
[2025-11-22 17:05:03] 2025-11-22 16:01:12,468 | INFO     | chi2: 2.8543420400930035
[2025-11-22 17:05:03] 2025-11-22 16:01:12,468 | INFO     | current chi2=2.8543420400930035 (change=0.14298904454952757 %)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,469 | INFO     | left removable region: 20
[2025-11-22 17:05:03] 2025-11-22 16:01:12,470 | INFO     | sum of square deviations: 579842248255.9342
[2025-11-22 17:05:03] 2025-11-22 16:01:12,512 | INFO     | sum of deviations: 1837047039506.0337
[2025-11-22 17:05:03] 2025-11-22 16:01:12,512 | INFO     | mean x: 1763789007.5073051
[2025-11-22 17:05:03] 2025-11-22 16:01:12,513 | INFO     | mean y: 2326203.551948052
[2025-11-22 17:05:03] 2025-11-22 16:01:12,513 | INFO     | intersect: -5585682232.018993
[2025-11-22 17:05:03] 2025-11-22 16:01:12,514 | INFO     | chi2: 0.10915024174115974
[2025-11-22 17:05:03] 2025-11-22 16:01:12,515 | INFO     | current memory leak: 3.17 B/s (using 1232 data points, chi2=0.11)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | could have reported an average CPU frequency of 2598 MHz (46 samples)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | ..............................
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | . Timing measurements:
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | . get job = 0 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | . initial setup = 1 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | . payload setup = 5 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | . stage-in = 0 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,516 | INFO     | . payload execution = 77020 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,517 | INFO     | . stage-out = 2 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,517 | INFO     | . log creation = 0 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,517 | INFO     | ..............................
[2025-11-22 17:05:03] 2025-11-22 16:01:12,627 | INFO     | 
[2025-11-22 17:05:03] 2025-11-22 16:01:12,627 | INFO     | job summary report
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | --------------------------------------------------
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | PanDA job id: 6894257087
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | task id: 47533967
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | errors: (none)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | pilot state: finished 
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | transexitcode: 0
[2025-11-22 17:05:03] 2025-11-22 16:01:12,628 | INFO     | exeerrorcode: 0
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | exeerrordiag: 
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | exitcode: 0
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | exitmsg: OK
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | cpuconsumptiontime: 303185 s
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | nevents: 1000
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | neventsw: 0
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | pid: 2268192
[2025-11-22 17:05:03] 2025-11-22 16:01:12,629 | INFO     | pgrp: 2268192
[2025-11-22 17:05:03] 2025-11-22 16:01:12,630 | INFO     | corecount: 4
[2025-11-22 17:05:03] 2025-11-22 16:01:12,630 | INFO     | event service: False
[2025-11-22 17:05:03] 2025-11-22 16:01:12,630 | INFO     | sizes: {0: 2298818, 1: 2298818, 4: 2299108, 11: 2299136, 77030: 2359370, 77034: 2368570, 77042: 2368760}
[2025-11-22 17:05:03] 2025-11-22 16:01:12,630 | INFO     | --------------------------------------------------
[2025-11-22 17:05:03] 2025-11-22 16:01:12,630 | INFO     | 
[2025-11-22 17:05:03] 2025-11-22 16:01:12,630 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-11-22 17:05:03] 2025-11-22 16:01:12,649 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,650 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,650 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,650 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,650 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,650 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,651 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,651 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,651 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,651 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,651 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,651 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,651 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,652 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,652 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,652 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,652 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,652 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,652 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 17:05:03] 2025-11-22 16:01:12,653 | INFO     | job 6894257087 has completed (purged errors)
[2025-11-22 17:05:03] 2025-11-22 16:01:12,653 | INFO     | overall cleanup function is called
[2025-11-22 17:05:03] 2025-11-22 16:01:13,666 | INFO     | --- collectZombieJob: --- 10, [2268192]
[2025-11-22 17:05:03] 2025-11-22 16:01:13,667 | INFO     | zombie collector waiting for pid 2268192
[2025-11-22 17:05:03] 2025-11-22 16:01:13,667 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 17:05:03] 2025-11-22 16:01:13,667 | INFO     | collected zombie processes
[2025-11-22 17:05:03] 2025-11-22 16:01:13,667 | INFO     | will attempt to kill all subprocesses of pid=2268192
[2025-11-22 17:05:03] 2025-11-22 16:01:14,018 | INFO     | process IDs to be killed: [2268192] (in reverse order)
[2025-11-22 17:05:03] 2025-11-22 16:01:14,106 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 17:05:03] 2025-11-22 16:01:14,107 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 17:05:03] 2025-11-22 16:01:14,116 | INFO     | did not find any defunct processes belonging to 2268192
[2025-11-22 17:05:03] 2025-11-22 16:01:14,124 | INFO     | did not find any defunct processes belonging to 2268192
[2025-11-22 17:05:03] 2025-11-22 16:01:14,125 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 17:05:03] 2025-11-22 16:01:14,125 | INFO     | ready for new job
[2025-11-22 17:05:03] 2025-11-22 16:01:14,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 17:05:03] 2025-11-22 16:01:14,131 | INFO     | ***************************************
[2025-11-22 17:05:03] 2025-11-22 16:01:14,131 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 17:05:03] 2025-11-22 16:01:14,132 | INFO     | ***************************************
[2025-11-22 17:05:03] 2025-11-22 16:01:14,132 | INFO     | 
[2025-11-22 17:05:03] 2025-11-22 16:01:14,134 | INFO     | architecture information:
[2025-11-22 17:05:03] 2025-11-22 16:01:14,135 | INFO     | executing command: cat /etc/os-release
[2025-11-22 17:05:03] 2025-11-22 16:01:14,148 | INFO     | cat /etc/os-release:
[2025-11-22 17:05:03] NAME="CentOS Linux"
[2025-11-22 17:05:03] VERSION="7 (Core)"
[2025-11-22 17:05:03] ID="centos"
[2025-11-22 17:05:03] ID_LIKE="rhel fedora"
[2025-11-22 17:05:03] VERSION_ID="7"
[2025-11-22 17:05:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 17:05:03] ANSI_COLOR="0;31"
[2025-11-22 17:05:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 17:05:03] HOME_URL="https://www.centos.org/"
[2025-11-22 17:05:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 17:05:03] 
[2025-11-22 17:05:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 17:05:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 17:05:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 17:05:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 17:05:03] 
[2025-11-22 17:05:03] 2025-11-22 16:01:14,149 | INFO     | ***************************************
[2025-11-22 17:05:03] 2025-11-22 16:01:14,652 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-11-22 17:05:03] 2025-11-22 16:01:14,668 | INFO     | sufficient remaining disk space (1667517906944 B)
[2025-11-22 17:05:03] 2025-11-22 16:01:14,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 17:05:03] 2025-11-22 16:01:14,669 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 17:05:03] 2025-11-22 16:01:14,669 | INFO     | update_server=False
[2025-11-22 17:05:03] 2025-11-22 16:01:14,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 17:05:03] 2025-11-22 16:01:14,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 17:05:03] 2025-11-22 16:01:14,803 | INFO     | aborting loop
[2025-11-22 17:05:03] 2025-11-22 16:01:15,202 | INFO     | all data control threads have been joined
[2025-11-22 17:05:03] 2025-11-22 16:01:15,369 | INFO     | all payload control threads have been joined
[2025-11-22 17:05:03] 2025-11-22 16:01:15,639 | INFO     | all job control threads have been joined
[2025-11-22 17:05:03] 2025-11-22 16:01:15,675 | INFO     | [job] retrieve thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:15,804 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:15,808 | INFO     | [job] job monitor thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:15,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 17:05:03] 2025-11-22 16:01:16,040 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 17:05:03] 2025-11-22 16:01:16,207 | INFO     | [data] control thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,299 | INFO     | [job] validate thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,374 | INFO     | [payload] control thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,387 | INFO     | [payload] failed_post thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,645 | INFO     | [job] control thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,725 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,899 | INFO     | [payload] validate_post thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,944 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:16,947 | INFO     | [data] copytool_in thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:17,632 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 17:05:03] 2025-11-22 16:01:17,983 | INFO     | [data] copytool_out thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:18,637 | INFO     | [job] queue monitor thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:20,090 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 17:05:03] 2025-11-22 16:01:45,911 | INFO     | PID=2261000 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 17:05:03] 2025-11-22 16:01:45,911 | INFO     | .. there are 2 such processes running
[2025-11-22 17:05:03] 2025-11-22 16:01:45,912 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 17:05:03] 2025-11-22 16:01:45,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 17:05:03] 2025-11-22 16:01:45,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 17:05:03] 2025-11-22 16:02:01,490 | INFO     | [monitor] cgroup control has ended
[2025-11-22 17:05:03] 2025-11-22 16:02:02,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22446236358464)>', '<ExcThread(monitor, started 22445993977600)>']
[2025-11-22 17:05:03] 2025-11-22 16:02:02,994 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 17:05:03] 2025-11-22 16:02:02,995 | INFO     | [monitor] control thread has ended
[2025-11-22 17:05:03] 2025-11-22 16:02:07,347 | INFO     | all workflow threads have been joined
[2025-11-22 17:05:03] 2025-11-22 16:02:07,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 17:05:03] 2025-11-22 16:02:07,348 | INFO     | traces error code: 0
[2025-11-22 17:05:03] 2025-11-22 16:02:07,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 17:05:03] 2025-11-22 16:02:07,496 [wrapper] ==== pilot stdout END ====
[2025-11-22 17:05:03] 2025-11-22 16:02:07,499 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 17:05:03] 2025-11-22 16:02:07,501 [wrapper] pilotpid: 2261000
[2025-11-22 17:05:03] 2025-11-22 16:02:07,504 [wrapper] Pilot exit status: 0
[2025-11-22 17:05:03] 2025-11-22 16:02:07,514 [wrapper] pandaids: 6894257087
[2025-11-22 17:05:03] 2025-11-22 16:02:07,575 [wrapper] cleanup supervisor_pilot 3091076 2261001
[2025-11-22 17:05:03] 2025-11-22 16:02:07,579 [wrapper] Test setup, not cleaning
[2025-11-22 17:05:03] 2025-11-22 16:02:07,581 [wrapper] apfmon messages muted
[2025-11-22 17:05:03] 2025-11-22 16:02:07,584 [wrapper] ==== wrapper stdout END ====
[2025-11-22 17:05:03] 2025-11-22 16:02:07,586 [wrapper] ==== wrapper stderr END ====
[2025-11-22 17:05:03]  *** Error codes and diagnostics ***
[2025-11-22 17:05:03]     "exeErrorCode": 0,
[2025-11-22 17:05:03]     "exeErrorDiag": "",
[2025-11-22 17:05:03]     "pilotErrorCode": 0,
[2025-11-22 17:05:03]     "pilotErrorDiag": "",
[2025-11-22 17:05:03]  *** Listing of results directory ***
[2025-11-22 17:05:03] total 1317616
[2025-11-22 17:05:03] -rwx------ 1 boinc boinc     36292 Nov 21 04:09 runpilot2-wrapper.sh
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc      5112 Nov 21 04:09 queuedata.json
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc    576529 Nov 21 04:09 pilot3.tar.gz
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc       100 Nov 21 18:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 17:05:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 18:06 run_atlas
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc       105 Nov 21 18:06 job.xml
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc      6419 Nov 21 19:36 init_data.xml
[2025-11-22 17:05:03] -rw-r--r-- 2 boinc boinc 409837028 Nov 21 19:36 EVNT.47493127._002147.pool.root.1
[2025-11-22 17:05:03] drwxrwx--x 2 boinc boinc      4096 Nov 21 19:36 shared
[2025-11-22 17:05:03] -rw-r--r-- 2 boinc boinc    590106 Nov 21 19:36 input.tar.gz
[2025-11-22 17:05:03] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:36 start_atlas.sh
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc         0 Nov 21 19:36 boinc_lockfile
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc      2786 Nov 21 19:36 pandaJob.out
[2025-11-22 17:05:03] -rw------- 1 boinc boinc    989817 Nov 21 19:36 agis_schedconf.cvmfs.json
[2025-11-22 17:05:03] drwx------ 5 boinc boinc      4096 Nov 21 19:36 pilot3
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc       532 Nov 22 16:49 boinc_task_state.xml
[2025-11-22 17:05:03] -rw------- 1 boinc boinc 909979987 Nov 22 17:00 HITS.47533967._001186.pool.root.1
[2025-11-22 17:05:03] -rw------- 1 boinc boinc      1046 Nov 22 17:00 memory_monitor_summary.json
[2025-11-22 17:05:03] -rw------- 1 boinc boinc   1526164 Nov 22 17:01 agis_ddmendpoints.agis.ALL.json
[2025-11-22 17:05:03] -rw------- 1 boinc boinc   1934807 Nov 22 17:01 log.47533967._001186.job.log.tgz.1
[2025-11-22 17:05:03] -rw------- 1 boinc boinc      8631 Nov 22 17:01 heartbeat.json
[2025-11-22 17:05:03] -rw------- 1 boinc boinc        95 Nov 22 17:01 pilot_heartbeat.json
[2025-11-22 17:05:03] -rw------- 1 boinc boinc      4834 Nov 22 17:02 pilotlog.txt
[2025-11-22 17:05:03] -rw------- 1 boinc boinc  10812572 Nov 22 17:02 log.47533967._001186.job.log.1
[2025-11-22 17:05:03] -rw------- 1 boinc boinc       353 Nov 22 17:02 output.list
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc       620 Nov 22 17:02 runtime_log
[2025-11-22 17:05:03] -rw------- 1 boinc boinc  12769280 Nov 22 17:02 result.tar.gz
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc      9206 Nov 22 17:02 runtime_log.err
[2025-11-22 17:05:03] -rw------- 1 boinc boinc       672 Nov 22 17:02 HZ4NDmshWg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeHHKDmjSWtOo.diag
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc        28 Nov 22 17:04 wrapper_checkpoint.txt
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc      8192 Nov 22 17:05 boinc_mmap_file
[2025-11-22 17:05:03] -rw-r--r-- 1 boinc boinc     21105 Nov 22 17:05 stderr.txt
[2025-11-22 17:05:03] HITS file was successfully produced:
[2025-11-22 17:05:03] -rw------- 1 boinc boinc 909979987 Nov 22 17:00 shared/HITS.pool.root.1
[2025-11-22 17:05:03]  *** Contents of shared directory: ***
[2025-11-22 17:05:03] total 1301964
[2025-11-22 17:05:03] -rw-r--r-- 2 boinc boinc 409837028 Nov 21 19:36 ATLAS.root_0
[2025-11-22 17:05:03] -rw-r--r-- 2 boinc boinc    590106 Nov 21 19:36 input.tar.gz
[2025-11-22 17:05:03] -rw-r--r-- 2 boinc boinc     15847 Nov 21 19:36 start_atlas.sh
[2025-11-22 17:05:03] -rw------- 1 boinc boinc 909979987 Nov 22 17:00 HITS.pool.root.1
[2025-11-22 17:05:03] -rw------- 1 boinc boinc  12769280 Nov 22 17:02 result.tar.gz
17:05:05 (2257094): run_atlas exited; CPU time 306105.834900
17:05:05 (2257094): called boinc_finish(0)

</stderr_txt>
]]>

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