Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:30:57 (3240170): wrapper (7.7.26015): starting
12:30:57 (3240170): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 12:30:57] Arguments: --nthreads 4
[2025-11-24 12:30:57] Threads: 4
[2025-11-24 12:30:57] Checking for CVMFS
[2025-11-24 12:30:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:30:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:30:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:30:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:30:58] 2.9.2.0 1949900 9087 96992 153244 2 81 20757009 36864000 0 130560 0 3592307 99.928 481597 5232 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 12:30:58] CVMFS is ok
[2025-11-24 12:30:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:30:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:30:58] Further information can be found at the LHC@home message board.
[2025-11-24 12:30:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:30:58] Checking for apptainer binary...
[2025-11-24 12:30:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:30:58] Running /usr/bin/apptainer --version
[2025-11-24 12:30:58] apptainer version 1.4.1-1.1
[2025-11-24 12:30:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:30:58] magicA250
[2025-11-24 12:30:58] apptainer works
[2025-11-24 12:30:58] Set ATHENA_PROC_NUMBER=4
[2025-11-24 12:30:58] Set ATHENA_CORE_NUMBER=4
[2025-11-24 12:30:58] Starting ATLAS job with PandaID=6890934247
[2025-11-24 12:30:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:25:43]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:25:43] 2025-11-24 18:25:18,206 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:25:43] 2025-11-24 18:25:18,206 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:25:43] 2025-11-24 18:25:18,206 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:25:43] 2025-11-24 18:25:18,206 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:25:43] 2025-11-24 18:25:18,206 | INFO     | job 6890934247 has completed (purged errors)
[2025-11-24 19:25:43] 2025-11-24 18:25:18,206 | INFO     | overall cleanup function is called
[2025-11-24 19:25:43] 2025-11-24 18:25:19,211 | INFO     | --- collectZombieJob: --- 10, [3250536]
[2025-11-24 19:25:43] 2025-11-24 18:25:19,211 | INFO     | zombie collector waiting for pid 3250536
[2025-11-24 19:25:43] 2025-11-24 18:25:19,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:25:43] 2025-11-24 18:25:19,211 | INFO     | collected zombie processes
[2025-11-24 19:25:43] 2025-11-24 18:25:19,211 | INFO     | will attempt to kill all subprocesses of pid=3250536
[2025-11-24 19:25:43] 2025-11-24 18:25:19,256 | INFO     | process IDs to be killed: [3250536] (in reverse order)
[2025-11-24 19:25:43] 2025-11-24 18:25:19,290 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:25:43] 2025-11-24 18:25:19,290 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:25:43] 2025-11-24 18:25:19,291 | INFO     | did not find any defunct processes belonging to 3250536
[2025-11-24 19:25:43] 2025-11-24 18:25:19,293 | INFO     | did not find any defunct processes belonging to 3250536
[2025-11-24 19:25:43] 2025-11-24 18:25:19,293 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:25:43] 2025-11-24 18:25:19,293 | INFO     | ready for new job
[2025-11-24 19:25:43] 2025-11-24 18:25:19,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:25:43] 2025-11-24 18:25:19,295 | INFO     | ***************************************
[2025-11-24 19:25:43] 2025-11-24 18:25:19,295 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:25:43] 2025-11-24 18:25:19,295 | INFO     | ***************************************
[2025-11-24 19:25:43] 2025-11-24 18:25:19,295 | INFO     | 
[2025-11-24 19:25:43] 2025-11-24 18:25:19,296 | INFO     | architecture information:
[2025-11-24 19:25:43] 2025-11-24 18:25:19,296 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:25:43] 2025-11-24 18:25:19,311 | INFO     | cat /etc/os-release:
[2025-11-24 19:25:43] NAME="CentOS Linux"
[2025-11-24 19:25:43] VERSION="7 (Core)"
[2025-11-24 19:25:43] ID="centos"
[2025-11-24 19:25:43] ID_LIKE="rhel fedora"
[2025-11-24 19:25:43] VERSION_ID="7"
[2025-11-24 19:25:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:25:43] ANSI_COLOR="0;31"
[2025-11-24 19:25:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:25:43] HOME_URL="https://www.centos.org/"
[2025-11-24 19:25:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:25:43] 
[2025-11-24 19:25:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:25:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:25:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:25:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:25:43] 
[2025-11-24 19:25:43] 2025-11-24 18:25:19,311 | INFO     | ***************************************
[2025-11-24 19:25:43] 2025-11-24 18:25:19,814 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 19:25:43] 2025-11-24 18:25:19,830 | INFO     | sufficient remaining disk space (335772909568 B)
[2025-11-24 19:25:43] 2025-11-24 18:25:19,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:25:43] 2025-11-24 18:25:19,830 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:25:43] 2025-11-24 18:25:19,830 | INFO     | update_server=False
[2025-11-24 19:25:43] 2025-11-24 18:25:19,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | INFO     | aborting loop
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:25:43] 2025-11-24 18:25:19,831 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:25:43] 2025-11-24 18:25:20,422 | INFO     | all payload control threads have been joined
[2025-11-24 19:25:43] 2025-11-24 18:25:20,784 | INFO     | all data control threads have been joined
[2025-11-24 19:25:43] 2025-11-24 18:25:20,836 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:20,836 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:20,836 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:21,188 | INFO     | all job control threads have been joined
[2025-11-24 19:25:43] 2025-11-24 18:25:21,371 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:21,428 | INFO     | [payload] control thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:21,467 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:21,789 | INFO     | [data] control thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:21,804 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:21,832 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:22,087 | INFO     | [job] validate thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:22,132 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:22,189 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:22,194 | INFO     | [job] control thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:22,314 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:22,744 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:25:43] 2025-11-24 18:25:26,751 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:29,895 | INFO     | job.realtimelogging is not enabled
[2025-11-24 19:25:43] 2025-11-24 18:25:30,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:25:43] 2025-11-24 18:25:37,918 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:25:43] 2025-11-24 18:25:38,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867165677376)>', '<ExcThread(monitor, started 139866549516032)>']
[2025-11-24 19:25:43] 2025-11-24 18:25:38,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:25:43] 2025-11-24 18:25:38,932 | INFO     | [monitor] control thread has ended
[2025-11-24 19:25:43] 2025-11-24 18:25:43,241 | INFO     | all workflow threads have been joined
[2025-11-24 19:25:43] 2025-11-24 18:25:43,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:25:43] 2025-11-24 18:25:43,241 | INFO     | traces error code: 0
[2025-11-24 19:25:43] 2025-11-24 18:25:43,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:25:43] 2025-11-24 18:25:43,321 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:25:43] 2025-11-24 18:25:43,326 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:25:43] 2025-11-24 18:25:43,330 [wrapper] pilotpid: 3243963
[2025-11-24 19:25:43] 2025-11-24 18:25:43,334 [wrapper] Pilot exit status: 0
[2025-11-24 19:25:43] 2025-11-24 18:25:43,345 [wrapper] pandaids: 6890934247
[2025-11-24 19:25:43] 2025-11-24 18:25:43,368 [wrapper] cleanup supervisor_pilot 3296657 3243964
[2025-11-24 19:25:43] 2025-11-24 18:25:43,372 [wrapper] Test setup, not cleaning
[2025-11-24 19:25:43] 2025-11-24 18:25:43,376 [wrapper] apfmon messages muted
[2025-11-24 19:25:43] 2025-11-24 18:25:43,379 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:25:43] 2025-11-24 18:25:43,384 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:25:43]  *** Error codes and diagnostics ***
[2025-11-24 19:25:43]     "exeErrorCode": 0,
[2025-11-24 19:25:43]     "exeErrorDiag": "",
[2025-11-24 19:25:43]     "pilotErrorCode": 0,
[2025-11-24 19:25:43]     "pilotErrorDiag": "",
[2025-11-24 19:25:43]  *** Listing of results directory ***
[2025-11-24 19:25:43] total 1309608
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc    576529 Nov 18 03:22 pilot3.tar.gz
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc      5112 Nov 18 03:56 queuedata.json
[2025-11-24 19:25:43] -rwx------ 1 boinc boinc     36292 Nov 18 03:57 runpilot2-wrapper.sh
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc       100 Nov 24 12:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:25:43] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 12:30 run_atlas
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc       105 Nov 24 12:30 job.xml
[2025-11-24 19:25:43] -rw-r--r-- 2 boinc boinc 410189346 Nov 24 12:30 EVNT.47483658._000083.pool.root.1
[2025-11-24 19:25:43] -rw-r--r-- 2 boinc boinc    590104 Nov 24 12:30 input.tar.gz
[2025-11-24 19:25:43] -rw-r--r-- 2 boinc boinc     15120 Nov 24 12:30 start_atlas.sh
[2025-11-24 19:25:43] drwxrwx--x 2 boinc boinc      4096 Nov 24 12:30 shared
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc         0 Nov 24 12:30 boinc_setup_complete
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc      6376 Nov 24 12:30 init_data.xml
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc         0 Nov 24 12:30 boinc_lockfile
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc      2771 Nov 24 12:30 pandaJob.out
[2025-11-24 19:25:43] -rw------- 1 boinc boinc    989803 Nov 24 12:31 agis_schedconf.cvmfs.json
[2025-11-24 19:25:43] drwx------ 5 boinc boinc      4096 Nov 24 12:31 pilot3
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc       532 Nov 24 19:20 boinc_task_state.xml
[2025-11-24 19:25:43] -rw------- 1 boinc boinc 917420837 Nov 24 19:24 HITS.47483661._000510.pool.root.1
[2025-11-24 19:25:43] -rw------- 1 boinc boinc      1031 Nov 24 19:25 memory_monitor_summary.json
[2025-11-24 19:25:43] -rw------- 1 boinc boinc   1516227 Nov 24 19:25 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:25:43] -rw------- 1 boinc boinc   1261058 Nov 24 19:25 log.47483661._000510.job.log.tgz.1
[2025-11-24 19:25:43] -rw------- 1 boinc boinc        95 Nov 24 19:25 pilot_heartbeat.json
[2025-11-24 19:25:43] -rw------- 1 boinc boinc      8585 Nov 24 19:25 heartbeat.json
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc      8192 Nov 24 19:25 boinc_mmap_file
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc        28 Nov 24 19:25 wrapper_checkpoint.txt
[2025-11-24 19:25:43] -rw------- 1 boinc boinc      4628 Nov 24 19:25 pilotlog.txt
[2025-11-24 19:25:43] -rw------- 1 boinc boinc   3505742 Nov 24 19:25 log.47483661._000510.job.log.1
[2025-11-24 19:25:43] -rw------- 1 boinc boinc       353 Nov 24 19:25 output.list
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc       620 Nov 24 19:25 runtime_log
[2025-11-24 19:25:43] -rw------- 1 boinc boinc   4782080 Nov 24 19:25 result.tar.gz
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc      8793 Nov 24 19:25 runtime_log.err
[2025-11-24 19:25:43] -rw------- 1 boinc boinc       668 Nov 24 19:25 UufMDmO5Qf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZ0JODmCLLN3m.diag
[2025-11-24 19:25:43] -rw-r--r-- 1 boinc boinc     11455 Nov 24 19:25 stderr.txt
[2025-11-24 19:25:43] HITS file was successfully produced:
[2025-11-24 19:25:43] -rw------- 1 boinc boinc 917420837 Nov 24 19:24 shared/HITS.pool.root.1
[2025-11-24 19:25:43]  *** Contents of shared directory: ***
[2025-11-24 19:25:43] total 1301772
[2025-11-24 19:25:43] -rw-r--r-- 2 boinc boinc 410189346 Nov 24 12:30 ATLAS.root_0
[2025-11-24 19:25:43] -rw-r--r-- 2 boinc boinc    590104 Nov 24 12:30 input.tar.gz
[2025-11-24 19:25:43] -rw-r--r-- 2 boinc boinc     15120 Nov 24 12:30 start_atlas.sh
[2025-11-24 19:25:43] -rw------- 1 boinc boinc 917420837 Nov 24 19:24 HITS.pool.root.1
[2025-11-24 19:25:43] -rw------- 1 boinc boinc   4782080 Nov 24 19:25 result.tar.gz
19:25:45 (3240170): run_atlas exited; CPU time 97231.622752
19:25:45 (3240170): called boinc_finish(0)

</stderr_txt>
]]>

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