Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:26:04 (793196): wrapper (7.7.26015): starting
01:26:04 (793196): wrapper: running run_atlas (--nthreads 6)
[2025-11-22 01:26:04] Arguments: --nthreads 6
[2025-11-22 01:26:04] Threads: 6
[2025-11-22 01:26:04] Checking for CVMFS
[2025-11-22 01:26:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:26:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:26:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:26:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:26:24] 2.13.3.0 9048 3557 93204 153128 2 81 18071598 20971520 916 130560 0 885428 99.987 31931 10 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-22 01:26:24] CVMFS is ok
[2025-11-22 01:26:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:26:24] Checking for apptainer binary...
[2025-11-22 01:26:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:26:24] Running /usr/bin/apptainer --version
[2025-11-22 01:26:24] apptainer version 1.4.4-1.el9
[2025-11-22 01:26:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:26:24] testio005
[2025-11-22 01:26:24] apptainer works
[2025-11-22 01:26:24] Set ATHENA_PROC_NUMBER=6
[2025-11-22 01:26:24] Set ATHENA_CORE_NUMBER=6
[2025-11-22 01:26:24] Starting ATLAS job with PandaID=6893881923
[2025-11-22 01:26:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 11:57:46]  *** The last 200 lines of the pilot log: ***
[2025-11-22 11:57:46] 2025-11-22 02:57:01,675 | INFO     | intersect: -10177884562.569937
[2025-11-22 11:57:46] 2025-11-22 02:57:01,676 | INFO     | chi2: 9.809423939817325
[2025-11-22 11:57:46] 2025-11-22 02:57:01,677 | INFO     | sum of square deviations: 71426440903.76505
[2025-11-22 11:57:46] 2025-11-22 02:57:01,684 | INFO     | sum of deviations: 608231759887.6007
[2025-11-22 11:57:46] 2025-11-22 02:57:01,684 | INFO     | mean x: 1763761149.0195758
[2025-11-22 11:57:46] 2025-11-22 02:57:01,685 | INFO     | mean y: 2728714.616639478
[2025-11-22 11:57:46] 2025-11-22 02:57:01,685 | INFO     | intersect: -15016576939.082886
[2025-11-22 11:57:46] 2025-11-22 02:57:01,685 | INFO     | chi2: 6.9746550169928305
[2025-11-22 11:57:46] 2025-11-22 02:57:01,685 | INFO     | current chi2=6.9746550169928305 (change=28.898424007529282 %)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,686 | INFO     | sum of square deviations: 69692867873.7629
[2025-11-22 11:57:46] 2025-11-22 02:57:01,694 | INFO     | sum of deviations: 740978099299.9733
[2025-11-22 11:57:46] 2025-11-22 02:57:01,694 | INFO     | mean x: 1763760996.5197368
[2025-11-22 11:57:46] 2025-11-22 02:57:01,694 | INFO     | mean y: 2740367.835526316
[2025-11-22 11:57:46] 2025-11-22 02:57:01,694 | INFO     | intersect: -18749655834.138393
[2025-11-22 11:57:46] 2025-11-22 02:57:01,695 | INFO     | chi2: 5.219942538830218
[2025-11-22 11:57:46] 2025-11-22 02:57:01,695 | INFO     | current chi2=5.219942538830218 (change=25.158412479004134 %)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,695 | INFO     | sum of square deviations: 67987574443.761185
[2025-11-22 11:57:46] 2025-11-22 02:57:01,703 | INFO     | sum of deviations: 738666022857.6722
[2025-11-22 11:57:46] 2025-11-22 02:57:01,703 | INFO     | mean x: 1763760844.0199006
[2025-11-22 11:57:46] 2025-11-22 02:57:01,703 | INFO     | mean y: 2740156.8606965174
[2025-11-22 11:57:46] 2025-11-22 02:57:01,703 | INFO     | intersect: -19160029195.971012
[2025-11-22 11:57:46] 2025-11-22 02:57:01,704 | INFO     | chi2: 5.196753929592221
[2025-11-22 11:57:46] 2025-11-22 02:57:01,704 | INFO     | current chi2=5.196753929592221 (change=0.4442311206589198 %)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,704 | INFO     | right removable region: 602
[2025-11-22 11:57:46] 2025-11-22 02:57:01,705 | INFO     | sum of square deviations: 71426433583.76505
[2025-11-22 11:57:46] 2025-11-22 02:57:01,713 | INFO     | sum of deviations: 229387387977.98984
[2025-11-22 11:57:46] 2025-11-22 02:57:01,713 | INFO     | mean x: 1763761454.0195758
[2025-11-22 11:57:46] 2025-11-22 02:57:01,713 | INFO     | mean y: 2729339.5008156607
[2025-11-22 11:57:46] 2025-11-22 02:57:01,713 | INFO     | intersect: -5661625055.001285
[2025-11-22 11:57:46] 2025-11-22 02:57:01,714 | INFO     | chi2: 6.881501749068723
[2025-11-22 11:57:46] 2025-11-22 02:57:01,714 | INFO     | current chi2=6.881501749068723 (change=29.848054368044036 %)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,715 | INFO     | sum of square deviations: 69692853233.76288
[2025-11-22 11:57:46] 2025-11-22 02:57:01,722 | INFO     | sum of deviations: 74395892066.88129
[2025-11-22 11:57:46] 2025-11-22 02:57:01,722 | INFO     | mean x: 1763761606.5197368
[2025-11-22 11:57:46] 2025-11-22 02:57:01,722 | INFO     | mean y: 2742969.259868421
[2025-11-22 11:57:46] 2025-11-22 02:57:01,722 | INFO     | intersect: -1880041448.6807542
[2025-11-22 11:57:46] 2025-11-22 02:57:01,723 | INFO     | chi2: 5.094246842538989
[2025-11-22 11:57:46] 2025-11-22 02:57:01,723 | INFO     | current chi2=5.094246842538989 (change=25.971873171021194 %)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,724 | INFO     | sum of square deviations: 67987552483.761185
[2025-11-22 11:57:46] 2025-11-22 02:57:01,732 | INFO     | sum of deviations: 24054474372.33338
[2025-11-22 11:57:46] 2025-11-22 02:57:01,732 | INFO     | mean x: 1763761759.0199006
[2025-11-22 11:57:46] 2025-11-22 02:57:01,732 | INFO     | mean y: 2747460.5555555555
[2025-11-22 11:57:46] 2025-11-22 02:57:01,732 | INFO     | intersect: -621283858.1388389
[2025-11-22 11:57:46] 2025-11-22 02:57:01,733 | INFO     | chi2: 4.852575381437663
[2025-11-22 11:57:46] 2025-11-22 02:57:01,733 | INFO     | current chi2=4.852575381437663 (change=4.7440076731907315 %)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,733 | INFO     | left removable region: 30
[2025-11-22 11:57:46] 2025-11-22 02:57:01,734 | INFO     | sum of square deviations: 58031723756.748276
[2025-11-22 11:57:46] 2025-11-22 02:57:01,741 | INFO     | sum of deviations: 279291559232.31116
[2025-11-22 11:57:46] 2025-11-22 02:57:01,741 | INFO     | mean x: 1763761728.520979
[2025-11-22 11:57:46] 2025-11-22 02:57:01,741 | INFO     | mean y: 2782472.5157342656
[2025-11-22 11:57:46] 2025-11-22 02:57:01,741 | INFO     | intersect: -8485742964.670121
[2025-11-22 11:57:46] 2025-11-22 02:57:01,742 | INFO     | chi2: 0.11518190020172764
[2025-11-22 11:57:46] 2025-11-22 02:57:01,742 | INFO     | current memory leak: 4.81 B/s (using 572 data points, chi2=0.12)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,743 | INFO     | could have reported an average CPU frequency of 3300 MHz (23 samples)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,743 | INFO     | ..............................
[2025-11-22 11:57:46] 2025-11-22 02:57:01,743 | INFO     | . Timing measurements:
[2025-11-22 11:57:46] 2025-11-22 02:57:01,743 | INFO     | . get job = 0 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,743 | INFO     | . initial setup = 5 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,743 | INFO     | . payload setup = 5 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,744 | INFO     | . stage-in = 0 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,744 | INFO     | . payload execution = 37653 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,744 | INFO     | . stage-out = 5 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,744 | INFO     | . log creation = 0 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,744 | INFO     | ..............................
[2025-11-22 11:57:46] 2025-11-22 02:57:01,829 | INFO     | 
[2025-11-22 11:57:46] 2025-11-22 02:57:01,829 | INFO     | job summary report
[2025-11-22 11:57:46] 2025-11-22 02:57:01,829 | INFO     | --------------------------------------------------
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | PanDA job id: 6893881923
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | task id: 47523449
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | errors: (none)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | pilot state: finished 
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | transexitcode: 0
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | exeerrorcode: 0
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | exeerrordiag: 
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | exitcode: 0
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | exitmsg: OK
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | cpuconsumptiontime: 216336 s
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | nevents: 1000
[2025-11-22 11:57:46] 2025-11-22 02:57:01,830 | INFO     | neventsw: 0
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | pid: 804073
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | pgrp: 804073
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | corecount: 6
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | event service: False
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | sizes: {0: 2298585, 1: 2298784, 5: 2299046, 11: 2299102, 37663: 2340878, 37669: 2350056, 37749: 2350246}
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | --------------------------------------------------
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | 
[2025-11-22 11:57:46] 2025-11-22 02:57:01,831 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,852 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 11:57:46] 2025-11-22 02:57:01,853 | INFO     | job 6893881923 has completed (purged errors)
[2025-11-22 11:57:46] 2025-11-22 02:57:01,853 | INFO     | overall cleanup function is called
[2025-11-22 11:57:46] 2025-11-22 02:57:02,868 | INFO     | --- collectZombieJob: --- 10, [804073]
[2025-11-22 11:57:46] 2025-11-22 02:57:02,869 | INFO     | zombie collector waiting for pid 804073
[2025-11-22 11:57:46] 2025-11-22 02:57:02,869 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 11:57:46] 2025-11-22 02:57:02,869 | INFO     | collected zombie processes
[2025-11-22 11:57:46] 2025-11-22 02:57:02,869 | INFO     | will attempt to kill all subprocesses of pid=804073
[2025-11-22 11:57:46] 2025-11-22 02:57:02,965 | INFO     | process IDs to be killed: [804073] (in reverse order)
[2025-11-22 11:57:46] 2025-11-22 02:57:03,008 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 11:57:46] 2025-11-22 02:57:03,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 11:57:46] 2025-11-22 02:57:03,011 | INFO     | did not find any defunct processes belonging to 804073
[2025-11-22 11:57:46] 2025-11-22 02:57:03,015 | INFO     | did not find any defunct processes belonging to 804073
[2025-11-22 11:57:46] 2025-11-22 02:57:03,016 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 11:57:46] 2025-11-22 02:57:03,016 | INFO     | ready for new job
[2025-11-22 11:57:46] 2025-11-22 02:57:03,016 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 11:57:46] 2025-11-22 02:57:03,019 | INFO     | ***************************************
[2025-11-22 11:57:46] 2025-11-22 02:57:03,019 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 11:57:46] 2025-11-22 02:57:03,019 | INFO     | ***************************************
[2025-11-22 11:57:46] 2025-11-22 02:57:03,019 | INFO     | 
[2025-11-22 11:57:46] 2025-11-22 02:57:03,021 | INFO     | architecture information:
[2025-11-22 11:57:46] 2025-11-22 02:57:03,021 | INFO     | executing command: cat /etc/os-release
[2025-11-22 11:57:46] 2025-11-22 02:57:03,035 | INFO     | cat /etc/os-release:
[2025-11-22 11:57:46] NAME="CentOS Linux"
[2025-11-22 11:57:46] VERSION="7 (Core)"
[2025-11-22 11:57:46] ID="centos"
[2025-11-22 11:57:46] ID_LIKE="rhel fedora"
[2025-11-22 11:57:46] VERSION_ID="7"
[2025-11-22 11:57:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 11:57:46] ANSI_COLOR="0;31"
[2025-11-22 11:57:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 11:57:46] HOME_URL="https://www.centos.org/"
[2025-11-22 11:57:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 11:57:46] 
[2025-11-22 11:57:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 11:57:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 11:57:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 11:57:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 11:57:46] 
[2025-11-22 11:57:46] 2025-11-22 02:57:03,035 | INFO     | ***************************************
[2025-11-22 11:57:46] 2025-11-22 02:57:03,538 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-22 11:57:46] 2025-11-22 02:57:03,554 | INFO     | sufficient remaining disk space (93547659264 B)
[2025-11-22 11:57:46] 2025-11-22 02:57:03,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 11:57:46] 2025-11-22 02:57:03,554 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 11:57:46] 2025-11-22 02:57:03,554 | INFO     | update_server=False
[2025-11-22 11:57:46] 2025-11-22 02:57:03,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 11:57:46] 2025-11-22 02:57:03,554 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:57:46] 2025-11-22 02:57:03,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 11:57:46] 2025-11-22 02:57:03,555 | INFO     | aborting loop
[2025-11-22 11:57:46] 2025-11-22 02:57:03,906 | INFO     | all data control threads have been joined
[2025-11-22 11:57:46] 2025-11-22 02:57:04,555 | INFO     | [job] retrieve thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:04,560 | INFO     | [job] queue monitor thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:04,560 | INFO     | [job] job monitor thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:04,592 | INFO     | all job control threads have been joined
[2025-11-22 11:57:46] 2025-11-22 02:57:04,600 | INFO     | all payload control threads have been joined
[2025-11-22 11:57:46] 2025-11-22 02:57:04,911 | INFO     | [data] control thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:04,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 11:57:46] 2025-11-22 02:57:05,115 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 11:57:46] 2025-11-22 02:57:05,297 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,340 | INFO     | [payload] validate_post thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,344 | INFO     | [data] copytool_in thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,370 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,401 | INFO     | [payload] failed_post thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,597 | INFO     | [job] control thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,604 | INFO     | [payload] control thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:05,922 | INFO     | [job] validate thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:06,022 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:06,918 | INFO     | [data] copytool_out thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:09,128 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 11:57:46] 2025-11-22 02:57:34,088 | INFO     | PID=797347 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 11:57:46] 2025-11-22 02:57:34,089 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 11:57:46] 2025-11-22 02:57:34,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 11:57:46] 2025-11-22 02:57:34,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 11:57:46] 2025-11-22 02:57:36,349 [wrapper] supervise_pilot (15 min periods counter: 43)
[2025-11-22 11:57:46] 2025-11-22 02:57:40,650 | INFO     | [monitor] cgroup control has ended
[2025-11-22 11:57:46] 2025-11-22 02:57:41,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102791886656)>', '<ExcThread(monitor, started 140102151952128)>']
[2025-11-22 11:57:46] 2025-11-22 02:57:42,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 11:57:46] 2025-11-22 02:57:42,121 | INFO     | [monitor] control thread has ended
[2025-11-22 11:57:46] 2025-11-22 02:57:46,276 | INFO     | all workflow threads have been joined
[2025-11-22 11:57:46] 2025-11-22 02:57:46,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 11:57:46] 2025-11-22 02:57:46,277 | INFO     | traces error code: 0
[2025-11-22 11:57:46] 2025-11-22 02:57:46,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 11:57:46] 2025-11-22 02:57:46,396 [wrapper] ==== pilot stdout END ====
[2025-11-22 11:57:46] 2025-11-22 02:57:46,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 11:57:46] 2025-11-22 02:57:46,402 [wrapper] pilotpid: 797347
[2025-11-22 11:57:46] 2025-11-22 02:57:46,404 [wrapper] Pilot exit status: 0
[2025-11-22 11:57:46] 2025-11-22 02:57:46,414 [wrapper] pandaids: 6893881923
[2025-11-22 11:57:46] 2025-11-22 02:57:46,441 [wrapper] cleanup supervisor_pilot  898829 797348
[2025-11-22 11:57:46] 2025-11-22 02:57:46,444 [wrapper] Test setup, not cleaning
[2025-11-22 11:57:46] 2025-11-22 02:57:46,446 [wrapper] apfmon messages muted
[2025-11-22 11:57:46] 2025-11-22 02:57:46,449 [wrapper] ==== wrapper stdout END ====
[2025-11-22 11:57:46] 2025-11-22 02:57:46,452 [wrapper] ==== wrapper stderr END ====
[2025-11-22 11:57:46]  *** Error codes and diagnostics ***
[2025-11-22 11:57:46]     "exeErrorCode": 0,
[2025-11-22 11:57:46]     "exeErrorDiag": "",
[2025-11-22 11:57:46]     "pilotErrorCode": 0,
[2025-11-22 11:57:46]     "pilotErrorDiag": "",
[2025-11-22 11:57:46]  *** Listing of results directory ***
[2025-11-22 11:57:46] total 1298168
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc    576529 Nov 21 05:07 pilot3.tar.gz
[2025-11-22 11:57:46] -rwx------. 1 boinc boinc     36292 Nov 21 05:27 runpilot2-wrapper.sh
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc      5112 Nov 21 05:27 queuedata.json
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc       100 Nov 22 01:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 11:57:46] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 01:26 run_atlas
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc       105 Nov 22 01:26 job.xml
[2025-11-22 11:57:46] -rw-r--r--. 2 boinc boinc 409785594 Nov 22 01:26 EVNT.47493127._000881.pool.root.1
[2025-11-22 11:57:46] -rw-r--r--. 2 boinc boinc     15847 Nov 22 01:26 start_atlas.sh
[2025-11-22 11:57:46] drwxrwx--x. 2 boinc boinc        68 Nov 22 01:26 shared
[2025-11-22 11:57:46] -rw-r--r--. 2 boinc boinc    590101 Nov 22 01:26 input.tar.gz
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc         0 Nov 22 01:26 boinc_lockfile
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc      2785 Nov 22 01:26 pandaJob.out
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc    989817 Nov 22 01:27 agis_schedconf.cvmfs.json
[2025-11-22 11:57:46] drwx------. 5 boinc boinc      4096 Nov 22 01:27 pilot3
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc      9371 Nov 22 07:04 init_data.xml
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc       533 Nov 22 11:44 boinc_task_state.xml
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc 901878043 Nov 22 11:55 HITS.47523449._008808.pool.root.1
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc      1030 Nov 22 11:55 memory_monitor_summary.json
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc   1526164 Nov 22 11:55 agis_ddmendpoints.agis.ALL.json
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc   1650452 Nov 22 11:55 log.47523449._008808.job.log.tgz.1
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc      8578 Nov 22 11:57 heartbeat.json
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc      8192 Nov 22 11:57 boinc_mmap_file
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc        29 Nov 22 11:57 wrapper_checkpoint.txt
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc        95 Nov 22 11:57 pilot_heartbeat.json
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc      4747 Nov 22 11:57 pilotlog.txt
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc   5225614 Nov 22 11:57 log.47523449._008808.job.log.1
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc       353 Nov 22 11:57 output.list
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc       620 Nov 22 11:57 runtime_log
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc   6891520 Nov 22 11:57 result.tar.gz
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc      8776 Nov 22 11:57 runtime_log.err
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc       651 Nov 22 11:57 esLLDmlQQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuVIKDmWCDuIn.diag
[2025-11-22 11:57:46] -rw-r--r--. 1 boinc boinc     20783 Nov 22 11:57 stderr.txt
[2025-11-22 11:57:46] HITS file was successfully produced:
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc 901878043 Nov 22 11:55 shared/HITS.pool.root.1
[2025-11-22 11:57:46]  *** Contents of shared directory: ***
[2025-11-22 11:57:46] total 1288256
[2025-11-22 11:57:46] -rw-r--r--. 2 boinc boinc 409785594 Nov 22 01:26 ATLAS.root_0
[2025-11-22 11:57:46] -rw-r--r--. 2 boinc boinc     15847 Nov 22 01:26 start_atlas.sh
[2025-11-22 11:57:46] -rw-r--r--. 2 boinc boinc    590101 Nov 22 01:26 input.tar.gz
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc 901878043 Nov 22 11:55 HITS.pool.root.1
[2025-11-22 11:57:46] -rw-------. 1 boinc boinc   6891520 Nov 22 11:57 result.tar.gz
11:57:47 (793196): run_atlas exited; CPU time 216330.529620
11:57:47 (793196): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN