Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:05:18 (472094): wrapper (7.7.26015): starting
11:05:18 (472094): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 11:05:18] Arguments: --nthreads 9
[2025-11-21 11:05:18] Threads: 9
[2025-11-21 11:05:18] Checking for CVMFS
[2025-11-21 11:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:05:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:05:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:05:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:05:20] 2.13.3.0 290515 25825 354876 153133 1 295 39553329 40960001 9162 16776704 0 123465413 99.749 79690528 38483 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 11:05:20] CVMFS is ok
[2025-11-21 11:05:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 11:05:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 11:05:20] Further information can be found at the LHC@home message board.
[2025-11-21 11:05:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:05:20] Checking for apptainer binary...
[2025-11-21 11:05:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:05:20] Running /usr/bin/apptainer --version
[2025-11-21 11:05:20] apptainer version 1.4.4-1.el9
[2025-11-21 11:05:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:05:21] c6-5-37-4.aglt2.org
[2025-11-21 11:05:21] apptainer works
[2025-11-21 11:05:21] Set ATHENA_PROC_NUMBER=9
[2025-11-21 11:05:21] Set ATHENA_CORE_NUMBER=9
[2025-11-21 11:05:21] Starting ATLAS job with PandaID=6893883401
[2025-11-21 11:05:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:11:15 (3320522): wrapper (7.7.26015): starting
00:11:15 (3320522): wrapper: running run_atlas (--nthreads 10)
[2025-11-22 00:11:15] Arguments: --nthreads 10
[2025-11-22 00:11:15] Threads: 10
[2025-11-22 00:11:15] This job has been restarted, cleaning up previous attempt
[2025-11-22 00:11:15] Checking for CVMFS
[2025-11-22 00:11:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:11:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:11:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:11:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:11:16] 2.13.3.0 290515 26611 356444 153159 1 383 31044874 40960000 21304 16776704 0 127602997 99.743 83458561 38323 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 00:11:16] CVMFS is ok
[2025-11-22 00:11:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:11:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 00:11:16] Further information can be found at the LHC@home message board.
[2025-11-22 00:11:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:11:16] Checking for apptainer binary...
[2025-11-22 00:11:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:11:16] Running /usr/bin/apptainer --version
[2025-11-22 00:11:16] apptainer version 1.4.4-1.el9
[2025-11-22 00:11:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:11:16] c6-5-37-4.aglt2.org
[2025-11-22 00:11:16] apptainer works
[2025-11-22 00:11:16] Set ATHENA_PROC_NUMBER=10
[2025-11-22 00:11:16] Set ATHENA_CORE_NUMBER=10
[2025-11-22 00:11:16] Starting ATLAS job with PandaID=6893883401
[2025-11-22 00:11:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:50:08]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:50:08] 2025-11-22 19:49:21,855 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:50:08] 2025-11-22 19:49:21,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:50:08] 2025-11-22 19:49:21,986 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:50:08] 2025-11-22 19:49:22,005 | INFO     | sum of square deviations: 199299375910.43582
[2025-11-22 14:50:08] 2025-11-22 19:49:22,112 | INFO     | sum of deviations: 1246451588486.9001
[2025-11-22 14:50:08] 2025-11-22 19:49:22,188 | INFO     | mean x: 1763814608.7485516
[2025-11-22 14:50:08] 2025-11-22 19:49:22,188 | INFO     | mean y: 3171820.5202780995
[2025-11-22 14:50:08] 2025-11-22 19:49:22,189 | INFO     | intersect: -11028019375.276703
[2025-11-22 14:50:08] 2025-11-22 19:49:22,190 | INFO     | chi2: 9.788179231469146
[2025-11-22 14:50:08] 2025-11-22 19:49:22,216 | INFO     | sum of square deviations: 195856025454.94275
[2025-11-22 14:50:08] 2025-11-22 19:49:22,346 | INFO     | sum of deviations: 1565760212725.1614
[2025-11-22 14:50:08] 2025-11-22 19:49:22,346 | INFO     | mean x: 1763814456.2645688
[2025-11-22 14:50:08] 2025-11-22 19:49:22,346 | INFO     | mean y: 3185957.386946387
[2025-11-22 14:50:08] 2025-11-22 19:49:22,346 | INFO     | intersect: -14097531607.127636
[2025-11-22 14:50:08] 2025-11-22 19:49:22,347 | INFO     | chi2: 6.543180858441315
[2025-11-22 14:50:08] 2025-11-22 19:49:22,347 | INFO     | current chi2=6.543180858441315 (change=33.15221652863804 %)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,379 | INFO     | sum of square deviations: 192452530268.56506
[2025-11-22 14:50:08] 2025-11-22 19:49:22,447 | INFO     | sum of deviations: 1869057168407.5645
[2025-11-22 14:50:08] 2025-11-22 19:49:22,447 | INFO     | mean x: 1763814303.7796013
[2025-11-22 14:50:08] 2025-11-22 19:49:22,447 | INFO     | mean y: 3199536.0668229777
[2025-11-22 14:50:08] 2025-11-22 19:49:22,447 | INFO     | intersect: -17126581837.129988
[2025-11-22 14:50:08] 2025-11-22 19:49:22,448 | INFO     | chi2: 3.544550727727433
[2025-11-22 14:50:08] 2025-11-22 19:49:22,448 | INFO     | current chi2=3.544550727727433 (change=45.828324107003226 %)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,449 | INFO     | sum of square deviations: 189088658581.88538
[2025-11-22 14:50:08] 2025-11-22 19:49:22,462 | INFO     | sum of deviations: 2041277346592.3623
[2025-11-22 14:50:08] 2025-11-22 19:49:22,462 | INFO     | mean x: 1763814151.293632
[2025-11-22 14:50:08] 2025-11-22 19:49:22,462 | INFO     | mean y: 3207340.307783019
[2025-11-22 14:50:08] 2025-11-22 19:49:22,462 | INFO     | intersect: -19037775326.960686
[2025-11-22 14:50:08] 2025-11-22 19:49:22,463 | INFO     | chi2: 2.4806217937293904
[2025-11-22 14:50:08] 2025-11-22 19:49:22,463 | INFO     | current chi2=2.4806217937293904 (change=30.0159037272454 %)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,464 | INFO     | sum of square deviations: 185763815079.71783
[2025-11-22 14:50:08] 2025-11-22 19:49:22,477 | INFO     | sum of deviations: 2023682628956.34
[2025-11-22 14:50:08] 2025-11-22 19:49:22,477 | INFO     | mean x: 1763813998.7983394
[2025-11-22 14:50:08] 2025-11-22 19:49:22,477 | INFO     | mean y: 3206530.384341637
[2025-11-22 14:50:08] 2025-11-22 19:49:22,478 | INFO     | intersect: -19211513777.477886
[2025-11-22 14:50:08] 2025-11-22 19:49:22,478 | INFO     | chi2: 2.4546014664381928
[2025-11-22 14:50:08] 2025-11-22 19:49:22,479 | INFO     | current chi2=2.4546014664381928 (change=1.048943750997141 %)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,479 | INFO     | right removable region: 842
[2025-11-22 14:50:08] 2025-11-22 19:49:22,479 | INFO     | sum of square deviations: 195854893186.07584
[2025-11-22 14:50:08] 2025-11-22 19:49:22,492 | INFO     | sum of deviations: 996252775584.5613
[2025-11-22 14:50:08] 2025-11-22 19:49:22,493 | INFO     | mean x: 1763814761.2575758
[2025-11-22 14:50:08] 2025-11-22 19:49:22,493 | INFO     | mean y: 3182879.6445221445
[2025-11-22 14:50:08] 2025-11-22 19:49:22,493 | INFO     | intersect: -8968792866.963005
[2025-11-22 14:50:08] 2025-11-22 19:49:22,494 | INFO     | chi2: 7.628566351504288
[2025-11-22 14:50:08] 2025-11-22 19:49:22,494 | INFO     | current chi2=7.628566351504288 (change=22.063479109798777 %)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,495 | INFO     | left removable region: 10
[2025-11-22 14:50:08] 2025-11-22 19:49:22,495 | INFO     | sum of square deviations: 178585721837.8645
[2025-11-22 14:50:08] 2025-11-22 19:49:22,508 | INFO     | sum of deviations: 1684945213867.0544
[2025-11-22 14:50:08] 2025-11-22 19:49:22,509 | INFO     | mean x: 1763814273.3161058
[2025-11-22 14:50:08] 2025-11-22 19:49:22,509 | INFO     | mean y: 3221727.189903846
[2025-11-22 14:50:08] 2025-11-22 19:49:22,509 | INFO     | intersect: -16638256591.398989
[2025-11-22 14:50:08] 2025-11-22 19:49:22,510 | INFO     | chi2: 0.14389858236904915
[2025-11-22 14:50:08] 2025-11-22 19:49:22,510 | INFO     | current memory leak: 9.43 B/s (using 832 data points, chi2=0.14)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,511 | INFO     | could have reported an average CPU frequency of 2920 MHz (13 samples)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | ..............................
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . Timing measurements:
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . get job = 0 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . initial setup = 2 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . payload setup = 6 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . stage-in = 0 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . payload execution = 52614 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . stage-out = 6 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | . log creation = 1 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,512 | INFO     | ..............................
[2025-11-22 14:50:08] 2025-11-22 19:49:22,689 | INFO     | 
[2025-11-22 14:50:08] 2025-11-22 19:49:22,689 | INFO     | job summary report
[2025-11-22 14:50:08] 2025-11-22 19:49:22,689 | INFO     | --------------------------------------------------
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | PanDA job id: 6893883401
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | task id: 47523449
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | errors: (none)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | pilot state: finished 
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | transexitcode: 0
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | exeerrorcode: 0
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | exeerrordiag: 
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | exitcode: 0
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | exitmsg: OK
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | cpuconsumptiontime: 219075 s
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | nevents: 1000
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | neventsw: 0
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | pid: 3366514
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | pgrp: 3366514
[2025-11-22 14:50:08] 2025-11-22 19:49:22,690 | INFO     | corecount: 10
[2025-11-22 14:50:08] 2025-11-22 19:49:22,691 | INFO     | event service: False
[2025-11-22 14:50:08] 2025-11-22 19:49:22,691 | INFO     | sizes: {0: 2298636, 1: 2298835, 7: 2299097, 12: 2299125, 52622: 2332100, 52623: 2332099, 52631: 2341333, 52660: 2341301}
[2025-11-22 14:50:08] 2025-11-22 19:49:22,691 | INFO     | --------------------------------------------------
[2025-11-22 14:50:08] 2025-11-22 19:49:22,691 | INFO     | 
[2025-11-22 14:50:08] 2025-11-22 19:49:22,691 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,735 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | job 6893883401 has completed (purged errors)
[2025-11-22 14:50:08] 2025-11-22 19:49:22,736 | INFO     | overall cleanup function is called
[2025-11-22 14:50:08] 2025-11-22 19:49:23,761 | INFO     | --- collectZombieJob: --- 10, [3366514]
[2025-11-22 14:50:08] 2025-11-22 19:49:23,761 | INFO     | zombie collector waiting for pid 3366514
[2025-11-22 14:50:08] 2025-11-22 19:49:23,761 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:50:08] 2025-11-22 19:49:23,761 | INFO     | collected zombie processes
[2025-11-22 14:50:08] 2025-11-22 19:49:23,762 | INFO     | will attempt to kill all subprocesses of pid=3366514
[2025-11-22 14:50:08] 2025-11-22 19:49:24,832 | INFO     | process IDs to be killed: [3366514] (in reverse order)
[2025-11-22 14:50:08] 2025-11-22 19:49:25,179 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:50:08] 2025-11-22 19:49:25,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:50:08] 2025-11-22 19:49:25,224 | INFO     | did not find any defunct processes belonging to 3366514
[2025-11-22 14:50:08] 2025-11-22 19:49:25,238 | INFO     | did not find any defunct processes belonging to 3366514
[2025-11-22 14:50:08] 2025-11-22 19:49:25,360 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:50:08] 2025-11-22 19:49:25,361 | INFO     | ready for new job
[2025-11-22 14:50:08] 2025-11-22 19:49:25,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:50:08] 2025-11-22 19:49:25,364 | INFO     | ***************************************
[2025-11-22 14:50:08] 2025-11-22 19:49:25,364 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:50:08] 2025-11-22 19:49:25,455 | INFO     | ***************************************
[2025-11-22 14:50:08] 2025-11-22 19:49:25,455 | INFO     | 
[2025-11-22 14:50:08] 2025-11-22 19:49:25,458 | INFO     | architecture information:
[2025-11-22 14:50:08] 2025-11-22 19:49:25,489 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:50:08] 2025-11-22 19:49:25,604 | INFO     | cat /etc/os-release:
[2025-11-22 14:50:08] NAME="CentOS Linux"
[2025-11-22 14:50:08] VERSION="7 (Core)"
[2025-11-22 14:50:08] ID="centos"
[2025-11-22 14:50:08] ID_LIKE="rhel fedora"
[2025-11-22 14:50:08] VERSION_ID="7"
[2025-11-22 14:50:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:50:08] ANSI_COLOR="0;31"
[2025-11-22 14:50:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:50:08] HOME_URL="https://www.centos.org/"
[2025-11-22 14:50:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:50:08] 
[2025-11-22 14:50:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:50:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:50:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:50:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:50:08] 
[2025-11-22 14:50:08] 2025-11-22 19:49:25,605 | INFO     | ***************************************
[2025-11-22 14:50:08] 2025-11-22 19:49:26,119 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 14:50:08] 2025-11-22 19:49:26,231 | INFO     | sufficient remaining disk space (68705845248 B)
[2025-11-22 14:50:08] 2025-11-22 19:49:26,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:50:08] 2025-11-22 19:49:26,231 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:50:08] 2025-11-22 19:49:26,231 | INFO     | update_server=False
[2025-11-22 14:50:08] 2025-11-22 19:49:26,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:50:08] 2025-11-22 19:49:26,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:50:08] 2025-11-22 19:49:26,610 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:50:08] 2025-11-22 19:49:26,610 | INFO     | aborting loop
[2025-11-22 14:50:08] 2025-11-22 19:49:26,664 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:50:08] 2025-11-22 19:49:27,028 | INFO     | all payload control threads have been joined
[2025-11-22 14:50:08] 2025-11-22 19:49:27,236 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:27,265 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:27,301 | INFO     | all data control threads have been joined
[2025-11-22 14:50:08] 2025-11-22 19:49:27,631 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:27,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:50:08] 2025-11-22 19:49:27,847 | INFO     | all job control threads have been joined
[2025-11-22 14:50:08] 2025-11-22 19:49:28,054 | INFO     | [payload] control thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,110 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,111 | INFO     | [job] validate thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,251 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,307 | INFO     | [data] control thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,352 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,474 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,499 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,637 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,660 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,719 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:28,853 | INFO     | [job] control thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:30,685 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:50:08] 2025-11-22 19:49:54,733 | INFO     | PID=3332485 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 14:50:08] 2025-11-22 19:49:54,734 | INFO     | .. there are 32 such processes running
[2025-11-22 14:50:08] 2025-11-22 19:49:54,735 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:50:08] 2025-11-22 19:49:54,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:50:08] 2025-11-22 19:49:54,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:50:08] 2025-11-22 19:50:00,200 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:50:08] 2025-11-22 19:50:01,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140328341571392)>', '<ExcThread(monitor, started 140327579019008)>']
[2025-11-22 14:50:08] 2025-11-22 19:50:01,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:50:08] 2025-11-22 19:50:01,826 | INFO     | [monitor] control thread has ended
[2025-11-22 14:50:08] 2025-11-22 19:50:06,198 | INFO     | all workflow threads have been joined
[2025-11-22 14:50:08] 2025-11-22 19:50:06,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:50:08] 2025-11-22 19:50:06,198 | INFO     | traces error code: 0
[2025-11-22 14:50:08] 2025-11-22 19:50:06,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:50:08] 2025-11-22 19:50:06,545 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:50:08] 2025-11-22 19:50:06,572 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:50:08] 2025-11-22 19:50:06,586 [wrapper] pilotpid: 3332485
[2025-11-22 14:50:08] 2025-11-22 19:50:06,619 [wrapper] Pilot exit status: 0
[2025-11-22 14:50:08] 2025-11-22 19:50:06,723 [wrapper] pandaids: 6893883401 6893883401
[2025-11-22 14:50:08] 2025-11-22 19:50:06,858 [wrapper] cleanup supervisor_pilot 2132506 3332486
[2025-11-22 14:50:08] 2025-11-22 19:50:06,874 [wrapper] Test setup, not cleaning
[2025-11-22 14:50:08] 2025-11-22 19:50:06,935 [wrapper] apfmon messages muted
[2025-11-22 14:50:08] 2025-11-22 19:50:06,964 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:50:08] 2025-11-22 19:50:06,992 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:50:08]  *** Error codes and diagnostics ***
[2025-11-22 14:50:08]     "exeErrorCode": 0,
[2025-11-22 14:50:08]     "exeErrorDiag": "",
[2025-11-22 14:50:08]     "pilotErrorCode": 0,
[2025-11-22 14:50:08]     "pilotErrorDiag": "",
[2025-11-22 14:50:08]  *** Listing of results directory ***
[2025-11-22 14:50:08] total 1698932
[2025-11-22 14:50:08] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 16:04 pilot3.tar.gz
[2025-11-22 14:50:08] -rwx------. 1 boincer umatlas     36292 Nov 20 16:09 runpilot2-wrapper.sh
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 16:09 queuedata.json
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas       100 Nov 21 11:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:50:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 11:05 run_atlas
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas       105 Nov 21 11:05 job.xml
[2025-11-22 14:50:08] -rw-r--r--. 3 boincer umatlas 409451404 Nov 21 11:05 EVNT.47493127._000904.pool.root.1
[2025-11-22 14:50:08] -rw-r--r--. 3 boincer umatlas 409451404 Nov 21 11:05 ATLAS.root_0
[2025-11-22 14:50:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:05 start_atlas.sh
[2025-11-22 14:50:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 11:05 shared
[2025-11-22 14:50:08] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 11:05 input.tar.gz
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas         0 Nov 21 11:05 boinc_lockfile
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas      2786 Nov 22 00:11 pandaJob.out
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas        57 Nov 22 00:11 setup.sh.local
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas    989752 Nov 22 00:11 agis_schedconf.cvmfs.json
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas       533 Nov 22 14:32 boinc_task_state.xml
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas      6842 Nov 22 14:46 init_data.xml
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas 903879890 Nov 22 14:47 HITS.47523449._009040.pool.root.1
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas      1069 Nov 22 14:48 memory_monitor_summary.json
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas   1526164 Nov 22 14:48 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas   2069594 Nov 22 14:48 log.47523449._009040.job.log.tgz.1
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas      8652 Nov 22 14:49 heartbeat.json
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas        96 Nov 22 14:49 pilot_heartbeat.json
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 14:50 boinc_mmap_file
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas        29 Nov 22 14:50 wrapper_checkpoint.txt
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas      4824 Nov 22 14:50 pilotlog.txt
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas   4433510 Nov 22 14:50 log.47523449._009040.job.log.1
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas       353 Nov 22 14:50 output.list
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas       620 Nov 22 14:50 runtime_log
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas   6522880 Nov 22 14:50 result.tar.gz
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas      9435 Nov 22 14:50 runtime_log.err
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas       790 Nov 22 14:50 nAZMDmt4Qg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1XIKDm9zNlRm.diag
[2025-11-22 14:50:08] -rw-r--r--. 1 boincer umatlas      4304 Nov 22 14:50 stderr.txt
[2025-11-22 14:50:08] HITS file was successfully produced:
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas 903879890 Nov 22 14:47 shared/HITS.pool.root.1
[2025-11-22 14:50:08]  *** Contents of shared directory: ***
[2025-11-22 14:50:08] total 1289528
[2025-11-22 14:50:08] -rw-r--r--. 3 boincer umatlas 409451404 Nov 21 11:05 ATLAS.root_0
[2025-11-22 14:50:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 11:05 start_atlas.sh
[2025-11-22 14:50:08] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 11:05 input.tar.gz
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas 903879890 Nov 22 14:47 HITS.pool.root.1
[2025-11-22 14:50:08] -rw-------. 1 boincer umatlas   6522880 Nov 22 14:50 result.tar.gz
14:50:10 (3320522): run_atlas exited; CPU time 218914.780466
14:50:10 (3320522): called boinc_finish(0)

</stderr_txt>
]]>

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